Underyearlings of dreissenid mussels (Dreissenidae,Bivalvia) in the phytophylic communities in the mouth area of the Rybinsk Reservoir tributary

The data on the abundance and biomass of dreissenid underyearlings in macrophyte stands in different zones of the mouth part of a small tributary of Rybinsk Reservoir are presented. The highest density and biomass of underyearlings are recorded in the transient zone of the reservoir and the river mouth cross section. It is shown that the number of dreissenid underyearlings inhabiting the mouth area has not changed considerably in the years with unfavorable meteorological conditions.     

Summer fluctuations of microbial planktonic communities in a eutrophic lake--Cierva Point, Antarctica

A eutrophic lake at Cierva Point, Antarctic Peninsula was surveyedduring the summers of 1997 and 1998. Phytoplankton size fractions(micro-, nano- and picoplankton) were analysed, as well as theabundance of bacterioplankton and planktonic ciliates. No permanentvertical stratification was found owing to the shallowness ofthe lake. Both nutrient concentrations and chlorophyll a valuesindicated highly eutrophic conditions, which are a consequenceof a natural enrichment by seabirds. Significant differencesin temperature between the 1997 and 1998 seasons strongly influencedmost of the biological features. The phytoplankton communityshowed a high algal species-richness, with important contributionsof epilithic, cryobiontic and soil algae. The dominant algalgroup was Chlorophyta, mainly represented by Chlamydomonas aff.celerrima, followed by Chl. aff. braunii. Some replacement ofphytoplanktonic species took place in summer and was more evidentin 1998. Picophytoplankton reached high densities, similar tothose reported from other Antarctic lakes. Bacterioplanktonabundances were typical of eutrophic and hypereutrophic lakes.There was a positive correlation between bacterial and totalphytoplankton abundance. Ciliates reached some very high peaks,with higher figures than those reported for other Antarcticsystems with similar trophic status.     

Coexistence of mixotrophs, autotrophs, and heterotrophs in planktonic microbial communities

We examine what circumstances allow the coexistence of microorganisms following different nutritional strategies, using a mathematical model. This model incorporates four nutritional types commonly found in planktonic ecosystems: (1) heterotrophic bacteria that consume dissolved organic matter and are prey to some of the other organisms; (2) heterotrophic zooflagellates that depend entirely on bacterial prey; (3) phototrophic algae that depend only on light and inorganic nutrients, and (4) mixotrophs that photosynthesize, take up inorganic nutrients, and consume bacterial prey. Mixotrophs are characterized by a parameter representing proportional mixing of phototrophic and heterotrophic nutritional strategies. Varying this parameter, a range of mixotrophic strategies was examined in hypothetical habitats differing in supplies of light, dissolved organic carbon, and dissolved inorganic phosphorous. Mixotrophs expressing a wide range of mixotrophic strategies persisted in model habitats with low phosphorus supply, but only those with a strategy that is mostly autotrophic persisted with high nutrient supply, and then only when light supply was also high. Organisms representing all four nutritional strategies were predicted to coexist in habitats with high phosphorus and light supplies. Coexistence involves predation by zooflagellates and mixotrophs balancing the high competitive ability of bacteria for phosphorus, the partitioning of partially overlapping resources between all populations, and possibly nonequlibrium dynamics. In most habitats, the strategy predicted to maximize the abundance of mixotrophs is to be mostly photosynthetic and supplement nutritional needs by consuming bacteria.     

Impact of natural metazooplankton assemblage on planktonic microbial communities in a newly flooded reservoir

The grazing impact of a natural assemblage of metazoan zooplankton on pigmented flagellates (PF), heterotrophic nanoflagellates (HNF), ciliates, and non-flagellate algae and microcyanobacteria (NFAM) was measured in situ during the period of thermal stratification in a newly flooded reservoir (Reservoir de la Sep, France). Experiments were conducted with diffusion chambers in the meta- and epilimnion over a period of 7 h. The mean mortalities of PF in the epi- and metalimnion (0.08 0.02 and 0.06 ± 0.03 h^-1, respectively), of HNF (0.04 ± 0.02 and 0.05 ± 0.02 h^-1) and ciliates (0.09 ± 0.04 and 0.11 ± 0.04 h^-1) demonstrate the impact of the metazoan zooplankton, and particularly of the rotifer Asplanchna priodonta, on the components of the microbial loop. The mortality of NFAM, accounting for 14 and 18% of total mortality, remained low throughout the study. The taxa with the highest mortality were pigmented flagellates of 4-19 m, HNF, and small-sized ciliates such as Halteria sp. (0.10 ± 0.02 h^-1 at 1 m and 0.30 ± 0.38 h^-1 at 7 m) and Urotricha furcata (0.11 ± 0.05 h^-1 at 1 m and 0.12 ± 0.06 h^-1 at 7 m). Large-sized ciliates (Paradileptus elephantinus) and sessile ciliates (Suctorida, Vorticella sp.) had a very low mortality (>0.04 h^-1). After reservoir flooding, the organisms in the microbial trophic loop, favoured by the high quantities of allochthonous organic matter, are subject to a higher mortality than the phytoplankton.      

The microbial loop in the planktonic communities in lakes with various trophic status

The structure of planktic trophic chains was studied in eight lakes of European Russia and five lakes in Central Asia. The lakes differed in the level of productivity, morphometric parameters, and the type of agitation and mineralization. It is found that the microbial loop of picophototrophic organisms, bacteria, heterotrophic flagellates, infusoria, and viruses constitutes 12.3-64.7% of the total plankton biomass. Positive correlation between the biomass of microbial community and the primary production of phytoplankton is observed, whereas no relation is revealed between the share of microorganisms in the plankton biomass and the trophic status of the water body. The presence of a great number of cladocerans decreased the role of the microbial loop in the structural organization of the planktic community. Heterotrophic flagellates consuming 3-81% of daily bacterial production were the principal cause of bacteria elimination only in some of the studied water bodies.     

Viruses in the plankton of the Rybinsk Reservoir

The role of autochthonous viruses in the regulation of bacterioplantkon abundance and production was studied in the Rybinsk Reservoir. During the ice-free period, the number of virus-like particles varied within the range of (11.0–57.4) × 10⁶ particles/ml. The virus to bacterioplankton abundance ratio ranged within 3.0–9.4. From 4 to 25% of bacterioplankton was infected by phages. A single infected cell contained up to 80 mature virus particles. The phage-induced bacterioplankton mortality in different parts of the reservoir constituted 3.7–41.8% (22.5% on average) of bacterioplankton daily production. Heterotrophic flagellates grazed from 7.6 to 68.8% (27.5% on average) of the daily bacterial production. Thus, along with flagellates, viruses are an important factor controlling bacterioplankton development in the reservoir.     

Viruses in the plankton of the Rybinsk Reservoir

The role of autochthonous viruses in the regulation of bacterioplankton abundance and production was studied in the Rybinsk Reservoir. During the ice-free period, the number of virus-like particles varied within the range of (11.0-57.4) x 10(6) particles/ml. The virus to bacterioplankton abundance ratio ranged within 3.0-9.4. From 4 to 25% of bacterioplankton was infected by phages. A single infected cell contained up to 80 mature virus particles. The phage-induced bacterioplankton mortality in different parts of the reservoir constituted 3.7-41.8% (22.5% on average) of bacterioplankton daily production. Heterotrophic flagellates grazed from 7.6 to 68.8% (27.5% on average) of the daily bacterial production. Thus, along with flagellates, viruses are an important factor controlling bacterioplankton development in the reservoir.     

Size-age characteristics and population structure of Clupeonella cultriventris at its naturalization in the Rybinsk Reservoir

Based on materials of 2000–2003, the characteristics of the distribution, size-age composition, and growth rate of Clupeonella cultrivensis from the Rybinsk Reservoir is given. Comparative data on reservoirs of the Middle Volga are provided. It is shown that, during these three years, C. cultriventris was distributed unevenly over stretches of water and increased its numbers tenfold. A decrease in the linear sizes and the body weight occurred against the background of the increased abundance.     

Spatial distribution of viruses associated with planktonic and attached microbial communities in hydrothermal environments

Viruses play important roles in marine surface ecosystems, but little is known about viral ecology and virus-mediated processes in deep-sea hydrothermal microbial communities. In this study, we examined virus-like particle (VLP) abundances in planktonic and attached microbial communities, which occur in physical and chemical gradients in both deep and shallow submarine hydrothermal environments (mixing waters between hydrothermal fluids and ambient seawater and dense microbial communities attached to chimney surface areas or macrofaunal bodies and colonies). We found that viruses were widely distributed in a variety of hydrothermal microbial habitats, with the exception of the interior parts of hydrothermal chimney structures. The VLP abundance and VLP-to-prokaryote ratio (VPR) in the planktonic habitats increased as the ratio of hydrothermal fluid to mixing water increased. On the other hand, the VLP abundance in attached microbial communities was significantly and positively correlated with the whole prokaryotic abundance; however, the VPRs were always much lower than those for the surrounding hydrothermal waters. This is the first report to show VLP abundance in the attached microbial communities of submarine hydrothermal environments, which presented VPR values significantly lower than those in planktonic microbial communities reported before. These results suggested that viral lifestyles (e.g., lysogenic prevalence) and virus interactions with prokaryotes are significantly different among the planktonic and attached microbial communities that are developing in the submarine hydrothermal environments.     

Structural and functional diversity of the microbial kinome

The eukaryotic protein kinase (ePK) domain mediates the majority of signaling and coordination of complex events in eukaryotes. By contrast, most bacterial signaling is thought to occur through structurally unrelated histidine kinases, though some ePK-like kinases (ELKs) and small molecule kinases are known in bacteria. Our analysis of the Global Ocean Sampling (GOS) dataset reveals that ELKs are as prevalent as histidine kinases and may play an equally important role in prokaryotic behavior. By combining GOS and public databases, we show that the ePK is just one subset of a diverse superfamily of enzymes built on a common protein kinase-like (PKL) fold. We explored this huge phylogenetic and functional space to cast light on the ancient evolution of this superfamily, its mechanistic core, and the structural basis for its observed diversity. We cataloged 27,677 ePKs and 18,699 ELKs, and classified them into 20 highly distinct families whose known members suggest regulatory functions. GOS data more than tripled the count of ELK sequences and enabled the discovery of novel families and classification and analysis of all ELKs. Comparison between and within families revealed ten key residues that are highly conserved across families. However, all but one of the ten residues has been eliminated in one family or another, indicating great functional plasticity. We show that loss of a catalytic lysine in two families is compensated by distinct mechanisms both involving other key motifs. This diverse superfamily serves as a model for further structural and functional analysis of enzyme evolution.     

Structural and functional organization of the respiratory center

The main experimental data on the organization of the respiratory center accumulated during the past 200 years are summarized. It is emphasized that the existence of separate, reciprocally interrelated, inspiratory and expiratory centers has never been proved. The notion of multiple respiratory centers in the CNS, including pneumotaxic, apneustic, gasping, and deep-exhalation centers, which allegedly underlie the multiple forms of respiratory movements, is demonstrated to be unjustified. Upon systemic consideration, the evidence in favor of the decisive role of neurons of the pre-Bötzinger complex and preinspiratory neurons in initiating the respiratory rhythm and maintaining rhythm generation in the respiratory center is contradictory and unconvincing. It is assumed that the respiratory center located in the medullary region of the brain of intact animals and humans fulfills the main functions of endogenous self-sustained generation of the respiratory rhythm, chemoregulation, and mechanoregulation in the respiratory system in an integrated manner, according to the general requirements of the body at a given moment.     

Testing the functional significance of microbial composition in natural communities

Ecologists have long studied the relationship between biotic composition and ecosystem functioning in larger organisms; however, only recently has this relationship been investigated widely in microorganisms. Recent studies are reviewed within a framework of three experimental approaches that are often used to study larger organisms: environmental treatment, common garden, and reciprocal transplant experiments. Although the composition of microorganisms cannot be easily manipulated in the field, applying these approaches to intact microbial communities can begin to tease apart the effects of microbial composition from environmental parameters on ecosystem functioning. The challenges in applying these approaches to microorganisms are highlighted and it is discussed how the experimental approach and duration affects a study's interpretation. In general, long-term environmental treatment experiments identify correlative relationships between microbial composition and ecosystem functioning, whereas short-term common garden experiments demonstrate that microbial composition influences ecosystem functioning. Finally, reciprocal transplants simultaneously test for interactive effects of the environment and composition on functioning. The studies reviewed provide evidence that, at least in some cases, microbial composition influences ecosystem functioning. It is concluded that whole-community experiments offer a way to test whether information about microbial composition will help predict ecosystem responses to global change.     

Structural and functional properties of low- and high-diversity planktonic food webs

To test the consequences of decreased diversity and exclusionof keystone species, we compared the planktonic food webs intwo acidic (pH     

Short-term response of nutrients,carbon and planktonic microbial communities to floodplain wetland inundation

Environmental flows were released to the Macquarie Marshes (~210,000 ha) in north-west NSW of Australia between October and December 2005, inundating an estimated 24,600 ha of floodplain area. According to the flood pulse concept, the marsh floodplains would have stored large amounts of nutrients and carbon during dry antecedent conditions, which would be released into the overlaying flood water. Field studies were conducted in mid-December 2005 at two sites, one on open floodplain woodland with a sparse canopy of River Red Gum and ground cover dominated by saltbushes and the other on open floodplain with black roly-poly. At each site, nutrients, dissolved organic carbon (DOC), planktonic bacteria and phytoplankton were monitored daily for a 6-day period from the overlaying water of a floodplain inundated by the environmental water release. Those in mesocosms deployed in situ, containing marsh floodplain sediments that had been inundated artificially, were also monitored. The mesocosm results from both the sites showed that release of nitrogen was rapid, attaining mean concentrations of total nitrogen of 3.7–14.8 mg l⁻¹, followed by more gradual increases in total phosphorus (mean concentrations 0.6–0.8 mg l⁻¹) and DOC (26.1–50.2 mg l⁻¹) within the 6-day experiment; planktonic microbial communities developed concomitantly with the increasing concentrations of nutrients and DOC, attaining mean densities of (6.0–6.9) × 10⁶ cells ml⁻¹ of planktonic bacteria and (80.7–81.4) × 10³ cells ml⁻¹ of phytoplankton; and for each site the overall measured condition of the mesocosm tended to approach that of the Marshes, over the course of the 6-day experiment. The present study (both observational and experimental) demonstrates that the floodplain sediments in the Marshes, which have been exposed to dry antecedent conditions, release nutrients and carbon to the overlaying flood water following inundation. These resources are thought to have been stored during the dry antecedent phase in accord with the flood pulse concept. Based on the mesocosm experiment, the released nutrients and carbon are in turn most likely to be used by microbial components, such as bacteria and algae, which develop within days of inundation of the floodplain sediments. Thus, environmental flow release provides potential for floodplains to attain a series of ecological responses including initial release of inorganic nutrients and dissolved organic matter and increase in planktonic bacteria and phytoplankton.     

Structural and Functional Characterization of Bacterial Biofilms Formed on Phragmites australis (Cav.) in the Rybinsk Reservoir

Microbiology - The article presents long-term data of abundance and biomass of bacterial biofilms forming on Phragmites australis (Cav.), one of widespread species of the Rybinsk Reservoir higher...     

Biology and production of mass chironomid species in the Rybinsk Reservoir

The biology, distribution and production of the following four mass species of chironomids from the shallow zone of the Rybinsk Reservoir are studied: Chironomus agilis Shobanov et Djomin, Ch. muratensis Ryser et al., Lipiniella araenicola Shilova, and Stictochironomus crassiforceps (Kieffer). Although these species differ greatly in life cycles, production, trophic states of habitats, duration, and rate of growth, their average P/B _aver coefficient values vary inconsiderably from 2.9 to 3.4; P/B _max varies from 1.4 to 1.6. Mean values of P/B _aver of 3.0 and of P/B _max of 1.5 are recommended for calculating the production of monocyclic chironomid species in fresh waters while determining the fish productivity of a waterbody or assessing losses associated with dredging.     

Viruses in bottom sediments of a Mesotrophic Reservoir (Rybinsk Reservoir,Upper Volga)

The total number and morphological and size composition of viriobenthos, number of bacteria infected by viruses, and burst size, as well as virus-induced mortality, abundance, and production of bacteriobenthos, have been estimated in bottom sediments of the Rybinsk Reservoir. The total number of viriobenthos in the reservoir varies within (1.1–10.9) × 10⁹ (on average, (5.9 ± 0.6) × 10⁹) particles/cm³; the total number of virus-to-bacteria ratio ranges within 0.2–2.1 (on average 0.9 ± 0.3). A weak positive correlation is found between the abundance of benthic viruses and the abundance and production of benthic bacteria. In most surveyed parts of the reservoir, infected benthic bacteria were not found or the portion of visibly infected bacterial cells (FVIC) did not exceed 0.5% of the total abundance of bacteriobenthos (N _B). A comparatively high infection of bacteria by viruses was recorded in bottom sediments only at one deep-water station, where FVIC was 2.5 of N _B.