Herbicide resistance and gene flow in wild-oats (Avena fatua and Avena sterilis ssp. ludoviciana)

The process of resistance evolution to fenoxaprop-P-ethyl was investigated in the cereal weeds wild-oats (Avena fatua L. and Avena sterilis ssp. ludoviciana Malzew) at a number of locations in England, including one farm where distinct patches occur within fields. Genetic fingerprints produced using PCR-based techniques provided evidence for hybridisation between the species and that resistance had spread from one patch to others. The proportion of total variation due to differences between populations (G_st) was estimated at 33^2%, and herbicide-resistant patches contained on average less genetic diversity than herbicide-sensitive counterparts: both findings were consistent with a high degree of self-pollination. It was however concluded that cross-pollination occurs both within and possibly between species, and that this can result in the spread of herbicide resistance.     

乙酰辅酶A羧化酶在治疗肥胖中的潜在作用

肥胖作为一种疾病引起了世界各国越来越多的重视。目前,对乙酰辅酶A羧化酶的研究表明,该酶和肥胖的发生有着重大关系．脂肪的代谢异常是导致肥胖的重要原因之一。乙酰辅酶A羧化酶是脂肪代谢过程中的一种重要的调节酶．它的产物丙二酰辅酶A的含量在一定程度上控制着脂肪酸的代谢。因此对乙酰辅酶A羧化酶的深入研究很可能为肥胖的治疗提供新的医疗手段。该文介绍乙酰辅酶A羧化酶在脂肪代谢中的作用、分类与调控．以及当前国际上对其研究的最新进展。     

Isozyme variation in germplasm accessions of the wild oat Avena sterilis L.

Summary Optimal exploitation of crop genetic resources requires a knowledge of the range and structure of the variation present in the gene pool of interest. Avena sterilis L., the cultivated oat progenitor, contains a store of genetic diversity that is readily accessible to the oat breeder. The objectives of the present paper were: (1) to evaluate isozyme polymorphisms in a sample of A. sterilis accessions from the U.S. National Small Grains Collection, (2) to analyze the distribution of isozyme diversity across the geographic range of the accessions, (3) to classify the accessions into groups based on isozyme variation, and (4) to suggest strategies for efficient sampling of this germplasm collection. One thousand and five accessions from 23 countries and 679 collection sites were screened for variation using 23 enzyme systems. Due to limited information about the genetic relationship among individual members of families of isozymes in hexaploid oat species, data were recorded solely for band presence. The frequencies of bands in accessions from the various countries were used to calculate the probability of genotypic identity (I_x.y), the probability of a unique genotype (U_x.y), and an adjusted polymorphic index (H_x). Accessions from Turkey and Lebanon had the largest polymorphic index values, Turkish and Moroccan accessions displayed the greatest numbers of bands. Accessions from Iran, Turkey, Iraq, and Lebanon had the largest mean probabilities of containing unique genotypes. Based on isozyme data, Turkey appeared to represent the center of diversity in this germplasm collection. Band frequencies calculated among countries were used in a principal component analysis. Accessions from Israel and Morocco clustered together; accessions from Iran, Iraq, Turkey, and Ethiopia formed another group; and Algerian accessions formed an outlying group. Several isozyme bands had a regional distribution. These results suggested that choosing accessions from countries based on their groupings in the principal component analysis should secure a greater range of diversity than sampling from the collection at random. Cluster analyses based on Jaccard's distances calculated for all pairwise combinations of the 1005 accessions revealed six broad genetic groups of accessions. Groups 1 and 6 contained accessions from many countries and encompassed half of all accessions. Groups 2 and 4 were heavily populated by accessions from Israel and Morocco. Groups 3 and 5 were composed almost exclusively of accessions from Iran, Iraq, and Turkey. By selecting representative accessions from these six groups, oat breeders could most effectively sample the range of genetic variation in this A. sterilis collection.     

Cross-Resistance of a Chlorsulfuron-Resistant Biotype of Stellaria media to a Triazolopyrimidine Herbicide

A biotype of Stellaria media (L.) Vill. has been identified that is highly resistant to the herbicide chlorsulfuron. Resistance is due to an altered acetolactate synthase (ALS) that is much less sensitive to chlorsulfuron than the ALS from the susceptible (S) biotype. The S biotype was extremely sensitive to D489 (N-[2,6-dichlorophenyl]-5,7-dimethyl-1,2,4-triazolo[1,5a] pyrimidine-2-sulfonamide), a member of a new class of triazolopyrimidine herbicides, while the chlorsulfuron-resistant biotype exhibited complete cross-resistance at both the whole plant and enzyme levels. ALS activity of the S biotype was reduced by approximately 90% in the presence of 0.1 micromolar D489, while that of the R biotype was reduced by less than 10%. This result suggests that the two herbicides share a common binding site on ALS. Only very slight cross-resistance at the ALS level was found to imazamethabenz, an imidazolinone herbicide.     

Potential distribution of Avena sterilis L. in Europe under climate change

Avena sterilis (sterile oat) is one of the most extended and harmful weeds in Mediterranean cereal crops. A process‐based niche model for this species was developed using CLIMEX. The model was validated and used to assess the potential distribution of A. sterilis in Europe under the current climate and under two climate change scenarios. Both scenarios represent contrasting temporal patterns of economic development and CO₂ emissions. The projections under current climate conditions indicated that A. sterilis does not occupy the full extent of the climatically suitable habitat available to it in Europe. Under future climate scenarios, the model projection showed a gradual advance of sterile oat towards Northeastern Europe and a contraction in Southern Europe. The infested potential area increases from the current 45.2% to 51.3% in the low‐emission CO₂ scenario and to 59.5% under the most extreme scenario. These results provide the necessary knowledge for identifying and highlighting the potential invasion risk areas and for establishing the grounds on which to base the planning and management measures required. The main actions should be focused on controlling the large‐scale seed scattering, preventing seed dispersal into potentially suitable areas.     

Role of a Novel I1781T Mutation and Other Mechanisms in Conferring Resistance to Acetyl-CoA Carboxylase Inhibiting Herbicides in a Black-Grass Population

Background

Knowledge of the mechanisms of herbicide resistance is important for designing long term sustainable weed management strategies. Here, we have used an integrated biology and molecular approach to investigate the mechanisms of resistance to acetyl-CoA carboxylase inhibiting herbicides in a UK black-grass population (BG2).

Methodology/Principal Findings

Comparison between BG2 phenotypes using single discriminant rates of herbicides and genotypes based on ACCase gene sequencing showed that the I1781L, a novel I1781T, but not the W2027C mutations, were associated with resistance to cycloxydim. All plants were killed with clethodim and a few individuals containing the I1781L mutation were partially resistant to tepraloxydim. Whole plant dose response assays demonstrated that a single copy of the mutant T1781 allele conferred fourfold resistance levels to cycloxydim and clodinafop-propargyl. In contrast, the impact of the I1781T mutation was low (Rf = 1.6) and non-significant on pinoxaden. BG2 was also characterised by high levels of resistance, very likely non-target site based, to the two cereal selective herbicides clodinafop-propargyl and pinoxaden and not to the poorly metabolisable cyclohexanedione herbicides. Analysis of 480 plants from 40 cycloxydim resistant black grass populations from the UK using two very effective and high throughput dCAPS assays established for detecting any amino acid changes at the 1781 ACCase codon and for positively identifying the threonine residue, showed that the occurrence of the T1781 is extremely rare compared to the L1781 allele.

Conclusion/Significance

This study revealed a novel mutation at ACCase codon position 1781 and adequately assessed target site and non-target site mechanisms in conferring resistance to several ACCase herbicides in a black-grass population. It highlights that over time the level of suspected non-target site resistance to some cereal selective ACCase herbicides have in some instances surpassed that of target site resistance, including the one endowed by the most commonly encountered I1781L mutation.     

Loss of the Acetyl-CoA Carboxylase (accD) Gene in Poales

The loss of a gene is a rare genome-shaping event and as such, contributes important information to our understanding of phylogenetic relationships between genes and between species. Deletion of a gene can help to define a lineage. Here, we utilize the deletion of the chloroplast gene encoding the acetyl-CoA carboxylase subunit D (accD) to help us define lineages based on its presence or absence in monocot plants specifically in Poales. Southern blots were constructed and probed for the presence of the accD gene. The existence of the portion of the accD gene represented by the probe was also verified by PCR and sequencing. Sequences were utilized for assembly of gene trees to link the absence or partial loss of the gene with a particular lineage. Here, we report new information adding accD gene presence in the Xyridaceae, pseudogene presence in the Flagellariaceae, and the absence of accD in Restionaceae and Joinvilleaceae. Based on our findings and the available data for accD sequences in Poales, we propose a model for accD loss beginning with a single event creating a pseudogene in the common ancestor to the restiid and graminid clades within Poales. This model also suggests that this pseudogene is carried as the ancestral state throughout most of the divergence of the Poales, a condition that would explain the highly varied pattern of accD pseudogene presence or gene absence in members of the restiid and graminid clades.     

Mechanism of Sulfonylurea Herbicide Resistance in the Broadleaf Weed, Kochia scoparia

Selection of kochia (Kochia scoparia) biotypes resistant to the sulfonylurea herbicide chlorsulfuron has occurred through the continued use of this herbicide in monoculture cereal-growing areas in the United States. The apparent sulfonylurea resistance observed in kochia was confirmed in greenhouse tests. Fresh and dry weight accumulation in the resistant kochia was 2- to >350-fold higher in the presence of four sulfonylurea herbicides as compared to the susceptible biotype. Acetolactate synthase (ALS) activity isolated from sulfonylurea-resistant kochia was less sensitive to inhibition by three classes of ALS-inhibiting herbicides, sulfonylureas, imidazolinones, and sulfonanilides. The decrease in ALS sensitivity to inhibition (as measured by the ratio of resistant I₅₀ to susceptible I₅₀) was 5- to 28-fold, 2- to 6-fold, and 20-fold for sulfonylurea herbicides, imidazolinone herbicides, and a sulfonanilide herbicide, respectively. No differences were observed in the ALS-specific activities or the rates of [¹⁴C]chlorsulfuron uptake, translocation, and metabolism between susceptible and resistant kochia biotypes. The K_m values for pyruvate using ALS from susceptible and resistant kochia were 2.13 and 1.74 mm, respectively. Based on these results, the mechanism of sulfonylurea resistance in this kochia biotype is due solely to a less sulfonylurea-sensitive ALS enzyme.     

A Novel W1999S Mutation and Non-Target Site Resistance Impact on Acetyl-CoA Carboxylase Inhibiting Herbicides to Varying Degrees in a UK Lolium multiflorum Population

Background

Acetyl-CoA carboxylase (ACCase) inhibiting herbicides are important products for the post-emergence control of grass weed species in small grain cereal crops. However, the appearance of resistance to ACCase herbicides over time has resulted in limited options for effective weed control of key species such as Lolium spp. In this study, we have used an integrated biological and molecular biology approach to investigate the mechanism of resistance to ACCase herbicides in a Lolium multiflorum Lam. from the UK (UK21).

Methodology/Principal Findings

The study revealed a novel tryptophan to serine mutation at ACCase codon position 1999 impacting on ACCase inhibiting herbicides to varying degrees. The W1999S mutation confers dominant resistance to pinoxaden and partially recessive resistance to cycloxydim and sethoxydim. On the other hand, plants containing the W1999S mutation were sensitive to clethodim and tepraloxydim. Additionally population UK21 is characterised by other resistance mechanisms, very likely non non-target site based, affecting several aryloxyphenoxyproprionate (FOP) herbicides but not the practical field rate of pinoxaden. The positive identification of wild type tryptophan and mutant serine alleles at ACCase position 1999 could be readily achieved with an original DNA based derived cleaved amplified polymorphic sequence (dCAPS) assay that uses the same PCR product but two different enzymes for positively identifying the wild type tryptophan and mutant serine alleles identified here.

Conclusion/Significance

This paper highlights intrinsic differences between ACCase inhibiting herbicides that could be exploited for controlling ryegrass populations such as UK21 characterised by compound-specific target site and non-target site resistance.     

Hypothalamic Inhibition of Acetyl-CoA Carboxylase Stimulates Hepatic Counter-Regulatory Response Independent of AMPK Activation in Rats

Background

Hypothalamic AMPK acts as a cell energy sensor and can modulate food intake, glucose homeostasis, and fatty acid biosynthesis. Intrahypothalamic fatty acid injection is known to suppress liver glucose production, mainly by activation of hypothalamic ATP-sensitive potassium (K(ATP)) channels. Since all models employed seem to involve malonyl-CoA biosynthesis, we hypothesized that acetyl-CoA carboxylase can modulate the counter-regulatory response independent of nutrient availability.

Methodology/Principal Findings

In this study employing immunoblot, real-time PCR, ELISA, and biochemical measurements, we showed that reduction of the hypothalamic expression of acetyl-CoA carboxylase by antisense oligonucleotide after intraventricular injection increased food intake and NPY mRNA, and diminished the expression of CART, CRH, and TRH mRNA. Additionally, as in fasted rats, in antisense oligonucleotide-treated rats, serum glucagon and ketone bodies increased, while the levels of serum insulin and hepatic glycogen diminished. The reduction of hypothalamic acetyl-CoA carboxylase also increased PEPCK expression, AMPK phosphorylation, and glucose production in the liver. Interestingly, these effects were observed without modification of hypothalamic AMPK phosphorylation.

Conclusion/Significance

Hypothalamic ACC inhibition can activate hepatic counter-regulatory response independent of hypothalamic AMPK activation.     

Constitutive and Chloroplast Targeted Expression of Acetyl-CoA Carboxylase in Oleaginous Microalgae Elevates Fatty Acid Biosynthesis

Photosynthetic microalgae are of burgeoning interest in the generation of commercial bioproducts. Microalgae accumulate high lipid content under adverse conditions, which in turn compromise their growth and hinder their commercial potential. Hence, it is necessary to engineer microalgae to mitigate elevated lipid accumulation and biomass. In this study, we identified acetyl-CoA carboxylase (ACCase) in oleaginous microalga Phaeodactylum tricornutum (PtACC2) and expressed constitutively in the chloroplast to demonstrate the potential of chloroplast engineering. Molecular characterization of transplastomic microalgae revealed that PtACC2 was integrated, transcribed and expressed successfully, and localized in the chloroplast. Enzymatic activity of ACCase was elevated by 3.3-fold, and the relative neutral lipid content increased substantially by 1.77-fold, and lipid content reached up to 40.8% of dry weight. Accordingly, the number and size of oil bodies markedly increased. Fatty acid profiling showed that the content of monounsaturated fatty acids increased, while polyunsaturated fatty acids decreased. This method provides a valuable genetic engineering toolbox for microalgal bioreactors with industrial significance.     

Resistance determination of the ACCase-inhibiting herbicide of clodinafop propargyl in Avena ludoviciana (Durieu), and study of their interaction using molecular docking and simulation

Molecular Biology Reports - Structural mutations providing herbicide resistance may cause a modification of the three dimensional structure of a protein which will lead to a decrease in the...     

The effect of cold and heat pretreatments on anther culture response of Avena sativa and A. sterilis

The effect of stress pretreatments on embryo induction in anther cultures of selected genotypes of Avena sativa and A. sterilis was tested. A heat pretreatment of isolated anthers at +32°C for 5 days was best for the A. sativa line WW 18019 and for A. sterilis line CAV 2648. Genotype dependency may exist since in ‘Stout’ heat pretreatment did not increase embryo production. For A. sterilis 13 green and three albino regenerants were produced, of which five plants (haploids) survived transfer to the greenhouse. For A. sativa, 30 various differentiation media/treatment combinations were used in an attempt to regenerate plants from embryos, with no success. Seven day cold treatment of cut tillers increased slightly the response level in ‘Stout’ and was routinely used in subsequent experiments. Maltose proved to be better then sucrose as a carbon source for the genotypes tested. Fourteen percent maltose promoted the highest induction in A. sterilis, but the quality of embryos was improved in the presence of 10% maltose for both species. Sub-optimal carbohydrate levels did not enhance embryo induction in oats. This revised version was published online in June 2006 with corrections to the Cover Date.     

Effect of Acetyl-CoA Carboxylase (ACC) on Lipid Production in Endophytic Fungi from Torreya grandis

Microbiology - Certain endophytic fungi isolated from Torreya grandis can produce similar unsaturated lipid of high economic value as its host plants. However, the lipid yield produced by...     

A study of the transpiration surfaces of Avena sterilis L. var. Algerian leaves using monosilicic acid as a tracer for water movement

Summary The sites and pathways of transpiration from leaves of Avena sterilis L. var. Algerian were studied using the accumulation of monosilicic acid as a tracer for water movement. Seedlings of Algerian oats were grown under silicon free conditions and fed monosilicic acid, in a normal nutrient solution, via the roots. The silicon component of monosilicic acid was located in freeze substituted tissue by means of x-ray microprobe analysis. Methods of tissue fixation preventing post treatment movement of tracer were developed and it was determined that monosilicic acid is a suitable tracer for water.Sites of water loss were marked by accumulation of silicon. Internal evaporating surfaces having a high intensity of water loss were demonstrated. Evaporation from epidermal surfaces was most intense over the guard and subsidiary cells with very little evaporation from the cuticular surfaces of normal epidermal cells. Moderately high evaporation occurred from epidermal fibre cells located above the veins. Evaporation from all exposed walls of guard cells including the wall adjacent to the pore was intense. Smaller amounts of tracer were located in the unexposed anticlinal walls of epidermal cells as well as within the unexposed walls of mesophyll cells. The results are interpreted as demonstrating the extent of internal transpiration surfaces and that cuticular epidermal transpiration is low. Strong support is given to the existence of peristomatal transpiration. Internal pathways of water movement are defined and the occurrence of these is discussed in relation to cuticular transpiration and lateral water movement in the epidermis.     

A comparison of RAPD and isozyme analyses for determining the genetic relationships among Avena sterilis L. accessions

Isozyme analysis is a valuable tool for determining genetic relationships among breeding lines and populations. The recently developed DNA technologies which can assay a greater proportion of the plant genome are providing a plentiful array of additional genomic markers. The objective of this research was to compare random amplified polymorphic DNA (RAPD) versus isozyme-based estimation of relationships among 24 accessions of a hexaploid wild oat, Avena sterilis L. The accessions were evaluated for variation in 23 enzyme systems and by 21 10-mer primers. A total of 77 polymorphic isozyme bands and 115 polymorphic RAPD bands were observed. Two matrices of genetic distances were estimated based on band presence/ absence. These matrices were subsequently utilized in cluster analysis and principal coordinate analysis. Both isozymes and RAPDs were proficient at distinguishing between the 24 accessions. The correspondence between the elements of both distance matrices was moderate (r=0.36**). Nevertheless, the overall representation of relationships among accessions by cluster analysis and ordination was in considerable agreement. The two techniques contrasted most notably in pair-by-pair comparisons of relationships. RAPD analysis resulted in a more definitive separation of clusters of accessions. The most significant impact of the DNA-based markers probably will be the more accurate determination of relationships between accessions that are too close to be accurately differentiated by isozymes.The research reported in this publication was funded by the North Carolina Agricultural Research Service, the North Carolina Biotechnology Center, and by a Heisenberg Fellowship (HE 1497/3-2) provided by the German Research Council to Manfred Heun