Complex population history of two Anopheles dirus mosquito species in Southeast Asia suggests the influence of Pleistocene climate change rather than human-mediated effects

Anopheles dirus and Anopheles baimaii are closely related species which feed on primates, particularly humans, and transmit malaria in the tropical forests of mainland Southeast Asia. Here, we report an in-depth phylogeographic picture based on 269 individuals from 21 populations from mainland Southeast Asia. Analysis of 1537 bp of mtDNA sequence revealed that the population history of A. baimaii is far more complex than previously thought. An old expansion (pre-300 kyr BP) was inferred in northern India/Bangladesh with a wave of south-eastwards expansion arriving at the Thai border (ca 135-173 kyr BP) followed by leptokurtic dispersal very recently (ca 16 kyr BP) into peninsular Thailand. The long and complex population history of these anthropophilic species suggests their expansions are not in response to the relatively recent (ca 40 kyr BP) human expansions in mainland Southeast Asia but, rather, fit well with our understanding of Pleistocene climatic change there.     

Stone artifacts and hominins in island Southeast Asia: new insights from Flores, eastern Indonesia

This study reexamines the current understanding of Pleistocene stone-artifact assemblages in island Southeast Asia. A differentiation has long been made between assemblages of large-sized "core tools" and assemblages of small-sized "flake tools." "Core tool" assemblages are often argued to be the handiwork of early hominin species such as Homo erectus, while small-sized "flake tool" assemblages have been attributed to Homo sapiens. We argue that this traditional Southeast Asian perspective on stone tools assumes that the artifacts recovered from a site reflect a complete technological sequence. Our analyses of Pleistocene-age artifact assemblages from Flores, Indonesia, demonstrate that large pebble-based cores and small flake-based cores are aspects of one reduction sequence. We propose that the Flores pattern applies across island Southeast Asia: large-sized "core tool" assemblages are in fact a missing element of the small-sized flake-based reduction sequences found in many Pleistocene caves and rock-shelters. We conclude by discussing the implications of this for associating stone-artifact assemblages with hominin species in island Southeast Asia.     

Pliocene climatic change in insular Southeast Asia as an engine of diversification in Ficedula flycatchers

Aims Insular Southeast Asia and adjacent regions are geographically complex, and were dramatically affected by both Pliocene and Pleistocene changes in climate, sea level and geology. These circumstances allow the testing of several biogeographical hypotheses regarding species distribution patterns and phylogeny. Avian species in this area present a challenge to biogeographers, as many are less hindered by barriers that may block the movements of other species. Widely distributed Southeast Asian avian lineages, of which there are many, have been generally neglected. Ficedula flycatchers are distributed across Eurasia, but are most diverse within southern Asia and Southeast Asian and Indo‐Australian islands. We tested the roles of vicariance, dispersal and the evolution of migratory behaviours as mechanisms of speciation within the Ficedula flycatchers, with a focus on species distributed in insular Southeast Asia. Methods Using a published molecular phylogeny of Ficedula flycatchers, we reconstructed ancestral geographical areas using dispersal vicariance analysis, weighted ancestral area analysis, and a maximum likelihood method. We evaluated the evolution of migratory behaviours using maximum likelihood ancestral character state reconstruction. Speciation timing estimates were calculated via local molecular clock methods. Results Ficedula originated in southern mainland Asia, c. 6.5 Ma. Our analyses indicate that two lineages within Ficedula independently and contemporaneously colonized insular Southeast Asia and Indo‐Australia, c. 5 Ma. The potential impact of vicariance due to rising sea levels is difficult to assess in these early colonization events because the ancestral areas to these clades are reconstructed as oceanic islands. Within each of these clades, inter‐island dispersal was critical to species’ diversification across oceanic and continental islands. Furthermore, Pliocene and Pleistocene climatic change may have caused the disjunct island distributions between several pairs of sister taxa. Both vicariance and dispersal shaped the distributions of continental species. Main conclusions This study presents the first evaluation, for Ficedula, of the importance of vicariance and dispersal in shaping distributions, particularly across insular Southeast Asia and Indo‐Australia. Although vicariant speciation may have initially separated the island clades from mainland ancestors, speciation within these clades was driven primarily by dispersal. Our results contribute to the emerging body of literature concluding that dynamic geological processes and climatic change throughout the Pliocene and Pleistocene have been important factors in faunal diversification across continental and oceanic islands.     

Discovery of a Mesolithic burial near the painted rock-shelter of Ban Tha Si (Lampang province,Northern Thailand): Implications for regional mortuary practices

Although the oldest Neolithic cultures in eastern Asia have for the most part been documented in China and Vietnam, a large number of Early Metal Age sites have been reported in northeastern Thailand. On the other hand, the Hoabinhian, principally identified by its characteristic unifacial tools, is known throughout the Late Pleistocene up until 3000 BP and is spread across the whole of continental Southeast Asia. The chronology of Hoabihnian lithic assemblages is still poorly documented and burials from the period are scarce and often do not provide enough information to allow the evolution of regional mortuary practices to be investigated. Here we describe a burial dated to 7047 ± 53 BP found associated with a Hoabinhian stone tool assemblage and fauna near the painted rock-shelter of Ban Tha Si. This discovery provides important new chrono-cultural information for continental Southeast Asia, especially with regard to changing regional mortuary practices.     

New evidence of old stone tools from the Mekong terraces,Cambodia

The study of prehistoric sites with lithic remains indicates that the occupation of continental Asia, notably India and China, seems to have taken place earlier than previously thought. However, this Early Pleistocene human dispersal out of Africa remains debatable for the Southeast of Asia, in spite of the discovery of original lithic assemblages on the Mekong terraces dated to the very beginning of the Middle Pleistocene in the centre of Cambodia, by Saurin and Carbonnel in the 1960–1970s. Although this fundamental lithic material has become a reference, it has not been subjected to renewed study of these artefacts over the past decades, and it is thus not possible, for the moment, to attribute it with certainty to a particular culture. In this paper, we present an analysis of the raw materials and a techno-typological study of a similar series of prehistoric tools gathered by one of us in order to bring to light new elements concerning the first Palaeolithic occupation of this region of the world.     

The first lithic industry of mainland Southeast Asia: Evidence of the earliest hominin in a tropical context

Recent discoveries of ancient sites in mainland Southeast Asia confirm the presence of old lithic industries as early as 0.8 Ma, i.e., at the transition between the Early to Middle Pleistocene. Although these open-air sites still require geochronological and biostratigraphic precisions, they allow us to understand the oldest vestiges of human presence in the tropics and the technical orientations chosen by these hominins. This article aims to present an objective and critical synthesis of the material discovered at the main sites. Some sites in Cambodia and Thailand have been the subject of archaeological field missions by the Ministère de l’Europe et des Affaires Étrangères (MEAE). The diversity of lithic tool types and manufacture methods encountered from the Middle Pleistocene in peninsular Asia shows a technical variability that stands out as a counterexample to diffusionist hypotheses of a cultural fabrication inherited from the West. The diversity of production methods, tools, and raw material matrices remains incomparable to those encountered in the West, Africa, or South Asia. To date, only evidence from China has allowed us to put forward the hypothesis of a common technical basis that would have spread from its southern territories; however, this hypothesis is currently under debate. Researchers have proposed the idea of continuous technical progress and the shift from heavy industry to a lighter and polished stone in Southeast Asia. However, the omnipresence of the pebble prevents a clear conclusion because these technical objects from Southeast Asia are quite simply incommensurable; a chopper in these regions may not be comparable with another chopper from the terraces of the Garonne or the Roussillon in France, for example. In other words, these tools are above all ‘tropical’ tools, and they belong to a distant cognitive world(s) with specific use(s), gesture(s), and meaning(s), making it impossible for them to be compared or evaluated by our faculty of Western judgment.     

Molar crown inner structural organization in Javanese Homo erectus

This contribution investigates the inner organizational pattern (tooth tissue proportions and enamel–dentine junction morphology) of seven Homo erectus permanent molar crowns from the late Lower‐early Middle Pleistocene Kabuh Formation of the Sangiran Dome (Central Java, Indonesia). The previous study of their external characteristics confirmed the degree of time‐related structural reduction occurred in Javanese H. erectus, and also revealed a combination of nonmetric features which are rare in the Lower and early Middle Pleistocene dental record, but more frequently found in recent humans. In accordance with their outer occlusal morphology, the specimens exhibit a set of derived internal features, such as thick to hyperthick enamel, an incomplete expression of the crest patterns at the enamel–dentine junction (EDJ) level, a sharp EDJ topography. As a whole, these features differ from those expressed in some penecontemporaneous specimens/samples representing African H. erectus/ergaster and H. heidelbergensis, as well as in Neanderthals, but occur in recent human populations. Further research in virtual dental paleoanthropology to be developed at macroregional scale would clarify the polarity and intensity of the intermittent exchanges between continental and insular Southeast Asia around the Lower to Middle Pleistocene boundary, as well as should shed light on the still poorly understood longitudinal evolutionary dynamics across continental Asia. Am J Phys Anthropol 156:148–157, 2015 © 2014 Wiley Periodicals, Inc.     

Comparative population structure of Cynopterus fruit bats in peninsular Malaysia and southern Thailand

The extent to which response to environmental change is mediated by species-specific ecology is an important aspect of the population histories of tropical taxa. During the Pleistocene glacial cycles and associated sea level fluctuations, the Sunda region in Southeast Asia experienced concurrent changes in landmass area and the ratio of forest to open habitat, providing an ideal setting to test the expectation that habitat associations played an important role in determining species' response to the opportunity for geographic expansion. We used mitochondrial control region sequences and six microsatellite loci to compare the phylogeographic structure and demographic histories of four broadly sympatric species of Old World fruit bats in the genus, Cynopterus. Two forest-associated species and two open-habitat generalists were sampled along a latitudinal transect in Singapore, peninsular Malaysia, and southern Thailand. Contrary to expectations based on habitat associations, the geographic scale of population structure was not concordant across ecologically similar species. We found evidence for long and relatively stable demographic history in one forest and one open-habitat species, and inferred non-coincident demographic expansions in the second forest and open-habitat species. Thus, while these results indicate that Pleistocene climate change did not have a single effect on population structure across species, a correlation between habitat association and response to environmental change was supported in only two of four species. We conclude that interactions between multiple factors, including historical and contemporary environmental change, species-specific ecology and interspecific interactions, have shaped the recent evolutionary histories of Cynopterus fruit bats in Southeast Asia.     

New Archaeological Evidence for an Early Human Presence at Monte Verde,Chile

Questions surrounding the chronology, place, and character of the initial human colonization of the Americas are a long-standing focus of debate. Interdisciplinary debate continues over the timing of entry, the rapidity and direction of dispersion, the variety of human responses to diverse habitats, the criteria for evaluating the validity of early sites, and the differences and similarities between colonization in North and South America. Despite recent advances in our understanding of these issues, archaeology still faces challenges in defining interdisciplinary research problems, assessing the reliability of the data, and applying new interpretative models. As the debates and challenges continue, new studies take place and previous research reexamined. Here we discuss recent exploratory excavation at and interdisciplinary data from the Monte Verde area in Chile to further our understanding of the first peopling of the Americas. New evidence of stone artifacts, faunal remains, and burned areas suggests discrete horizons of ephemeral human activity in a sandur plain setting radiocarbon and luminescence dated between at least ~18,500 and 14,500 cal BP. Based on multiple lines of evidence, including sedimentary proxies and artifact analysis, we present the probable anthropogenic origins and wider implications of this evidence. In a non-glacial cold climate environment of the south-central Andes, which is challenging for human occupation and for the preservation of hunter-gatherer sites, these horizons provide insight into an earlier context of late Pleistocene human behavior in northern Patagonia.     

A morphometric analysis of the Late Pleistocene Human Skeleton from the Moh Khiew Cave in Thailand.

Few Late Pleistocene human remains have been found in Southeast Asia and the morphological features of the people of that age are still largely unknown due to the virtual lack of human remains in the area. Recent excavations at the Moh Khiew Cave in Thailand resulted in the discovery of a Late Pleistocene human skeleton in a relatively good state of preservation. An AMS radiocarbon date on the charcoal sample gathered from the burial gave a result of 25,800 +/- 600 BP, implying that the inhabitants of Moh Khiew Cave resided in a part of Sundaland during the last glacial age. In debates on the population history of Southeast Asia, it has been repeatedly advocated that Southeast Asia was occupied by indigenous people akin to present-day Australo-Melanesians prior to an expansion of migrants from Northeast Asia into this area. Morphometric analyses were undertaken to test the validity of this hypothesis. In the present study, cranial and dental measurements recorded from the Moh Khiew remains are compared with those of early and modern samples from Southeast Asia and Australia. These comparisons demonstrate that the Moh Khiew specimen resembles the Late Pleistocene series from Coobool Creek, Australia in both cranial and dental measurements. These results suggest that the Moh Khiew skeleton, as well as other fossil remains from the Tabon, Niah and Gua Gunung sites, represents a member of the Sundaland population during the Late Pleistocene, who may share common ancestry with the present-day Australian Aborigines and Melanesians.     

Phylogeographic and Demographic Analysis of the Asian Black Bear (Ursus thibetanus) Based on Mitochondrial DNA

The Asian black bear Ursus thibetanus is widely distributed in Asia and is adapted to broad-leaved deciduous forests, playing an important ecological role in the natural environment. Several subspecies of U. thibetanus have been recognized, one of which, the Japanese black bear, is distributed in the Japanese archipelago. Recent molecular phylogeographic studies clarified that this subspecies is genetically distantly related to continental subspecies, suggesting an earlier origin. However, the evolutionary relationship between the Japanese and continental subspecies remained unclear. To understand the evolution of the Asian black bear in relation to geological events such as climatic and transgression-regression cycles, a reliable time estimation is also essential. To address these issues, we determined and analyzed the mt-genome of the Japanese subspecies. This indicates that the Japanese subspecies initially diverged from other Asian black bears in around 1.46Ma. The Northern continental population (northeast China, Russia, Korean peninsula) subsequently evolved, relatively recently, from the Southern continental population (southern China and Southeast Asia). While the Japanese black bear has an early origin, the tMRCAs and the dynamics of population sizes suggest that it dispersed relatively recently in the main Japanese islands: during the late Middle and Late Pleistocene, probably during or soon after the extinction of the brown bear in Honshu in the same period. Our estimation that the population size of the Japanese subspecies increased rapidly during the Late Pleistocene is the first evidential signal of a niche exchange between brown bears and black bears in the Japanese main islands.This interpretation seems plausible but was not corroborated by paleontological evidence that fossil record of the Japanese subspecies limited after the Late Pleistocene. We also report here a new fossil record of the oldest Japanese black bear from the Middle Pleistocene, and it supports our new evolutionary hypothesis of the Japanese black bear.     

蔚县盆地2019-2020年旧石器考古调查

作为广义泥河湾盆地的重要组成部分,蔚县盆地也曾是更新世期间古人类生存活动的重要地区。2019-2020年度在蔚县盆地开展了新一轮的旧石器考古调查工作,发现并确认18处旧石器和动物化石地点,获得35件石制品以及少量动物化石。从文化遗存的出露层位来看,泥河湾河湖相地层和黄土堆积是遗物埋藏的主要地貌部位。石制品类型包括石锤、石核(含细石核)、废片和工具;原料以火山岩、燧石和石英岩为主;石核剥片和工具修理均主要采用锤击法。技术类型总体上包含了简单石核石片技术和细石叶技术两套组合。结合相关地貌、地层对比资料以及石制品的类型特征,初步推测新地点的时代分别为中更新世和晚更新世,其中含细石叶技术制品地点的年代应为晚更新世晚期。     

The place of Tam Hang in Southeast Asian human evolution

In February 1934, Jacques Fromaget of the Geological Service of Indochina discovered the Tam Hang rockshelter during prospecting work in Northern Laos. During his excavations, the geologist discovered seventeen anatomically modern human skulls. Ten of these skulls have been recovered in association with six largely-complete skeletons. These fossils, which are dated by ¹⁴C to 15.7 ka, are used to address issues related to anatomical variation and migration in Southeast Asia during the Late Pleistocene. Excellent preservation of the skeletal material allows for estimation of body size and shape in a sample of young adults. Cranial metrics are also used to assess affiliations between Tam Hang and other Southeast Asian fossil samples in an effort to address questions about population migration. This fossil sample demonstrates that Late Pleistocene human activity may be productively addressed by continued work in the highlands of mainland Southeast Asia.     

泥河湾盆地上沙嘴石制品

泥河湾盆地上沙嘴出土石制品34件,包括石核、石片、石器和断块,并伴随纳玛象头骨与马和犀等的牙齿化石。上沙嘴石制品最初发现于1972年,报道后在国内外引起强烈反响。1980年该地点的时代被修改为晚更新世。近年来的考察再次表明,上沙嘴地点就位于下更新统泥河湾组,且得到了古地磁测年为距今160~170万年的确认。     

海南省昌江发现旧石器

2006年6月,在海南省大广坝水利工程的文物调查中,笔者等在昌江黎族自治县七差乡南阳溪第2级阶地里发现石制品。石制品共计4件;其中,3件出自阶地上部的黄色黏土层中,包括1件石核和2件砍砸器;另1件石核,采集于地表。根据阶地堆积物和器物类型初步判断,石制品的时代为旧石器时代晚期。     

华南晚更新世晚期人类行为复杂化的个案——江西万年吊桶环遗址的发现

吊桶环遗址位于江西万年县境内的大源盆地,是一处坐落在盆地西南边缘的孤立小山顶山的岩厦遗址。岩厦内发现晚更新世晚期以来文化堆积厚达4 m以上。1993-1999年期间曾经过三次发掘,出土了数以千计的石制品,包括石片石器、砾石石器及局部经过磨制加工的石制品,数量众多的动物骨骼遗存。尤为重要的是时代早,数量较多,类型复杂的骨、角及蚌制品的发现,如鹿角斧、骨鱼镖及穿孔蚌壳刀等。与此同时,还有多处用火与居住活动遗迹的发现。这些新发现清楚地记录了晚更新世人类在岩厦内活动的历史,为认识华南地区晚更新世晚期人类的"行为现代性"或"复杂化"进程提供了重要的新证据。     

尉家小堡遗址石制品的初步研究

山西北部桑干河中游的尉家小堡遗址,是华北地区以细石器加工技术为特征的旧石器时代晚期遗址,石制品岩性以硅质岩和火山角砾岩为主。细石核全部为楔形石核,显示出一套较为成熟而稳定的制坯及剥片工艺,包括软锤修整楔状缘、压制产生细石叶等。石器类型全部为刮削器。5.6%的拼合率说明此处为原地埋藏遗址。通过与同时代桑干河流域的其他遗址石制品的比较和遗址出土较精致的穿孔骨制品的现象判断,此遗址的年代应在旧石器时代晚期之末。     

Mass spectrometric U-series dating of Huanglong Cave in Hubei Province,central China: Evidence for early presence of modern humans in eastern Asia

Most researchers believe that anatomically modern humans (AMH) first appeared in Africa 160-190 ka ago, and would not have reached eastern Asia until ∼50 ka ago. However, the credibility of these scenarios might have been compromised by a largely inaccurate and compressed chronological framework previously established for hominin fossils found in China. Recently there has been a growing body of evidence indicating the possible presence of AMH in eastern Asia ca. 100 ka ago or even earlier. Here we report high-precision mass spectrometric U-series dating of intercalated flowstone samples from Huanglong Cave, a recently discovered Late Pleistocene hominin site in northern Hubei Province, central China. Systematic excavations there have led to the in situ discovery of seven hominin teeth and dozens of stone and bone artifacts. The U-series dates on localized thin flowstone formations bracket the hominin specimens between 81 and 101 ka, currently the most narrow time span for all AMH beyond 45 ka in China, if the assignment of the hominin teeth to modern Homo sapiens holds. Alternatively this study provides further evidence for the early presence of an AMH morphology in China, through either independent evolution of local archaic populations or their assimilation with incoming AMH. Along with recent dating results for hominin samples from Homo erectus to AMH, a new extended and continuous timeline for Chinese hominin fossils is taking shape, which warrants a reconstruction of human evolution, especially the origins of modern humans in eastern Asia.