Dynamics of bacterial community in up-flow anaerobic packed bed system for acid mine drainage treatment using wine wastes as carbon source

The dynamics of the bacterial populations in an up-flow anaerobic packed bed system (UAPB), applied in acid mine drainage treatment using wine wastes as carbon and nutrients source was elucidated by temperature gradient gel electrophoresis (TGGE) analysis. Moreover, TGGE fingerprints of the bacterial communities developed in a UAPB fed with wine wastes and a UAPB fed with pure ethanol were compared. TGGE fingerprinting and phylogenetic analysis showed that the composition of the community in the UAPB fed with wine wastes remained stable during whole time of operation and its bacterial diversity was higher. The bacterial community of the UAPB fed with wine wastes was composed by bacteria affiliated with Desulfovibrio, Clostridium, Citrobacter and Cronobacter genera and with Bacteroidales order, sp. The dominant community developed in the UAPB fed with ethanol was composed by bacteria affiliated with Desulfovibrio sp. The presence of several bacterial groups in the bioreactor fed with wine wastes suggests a synergistic interaction between the different populations. Syntrophic interaction may be the key factor for the utilization of wine wastes, a complex organic substrate, as carbon and electron source for sulphate reduction.     

The biodiversity and conservation of the birds of São Tomé and Príncipe

At present the majority of the endemic bird species occurring on São Tomé and Príncipe remain common, the rarer species being those largely confined to primary rainforest. In 1990 the dwarf olive ibis (Bostrychia bocagei), São Tomé fiscal shrike (Lanius newtoni), São Tomé short-tail (Amaurocichla bocagii) were rediscovered and in 1991 the São Tomé grosbeak (Neospiza concolor) was seen for the first time since 1888. Lowland primary forest is the only habitat on São Tomé in which all the endemic species are found. Primary forest on Príncipe remains largely unsurveyed since the beginning of the century. Due to the decline in the cocoa industry and poor infra-structure post-independence the extent of secondary forest is probably at its greatest since the late 1800s. This habitat is an important buffer zone against development for the remaining primary forest and also contains important populations of many of the endemic species, in particular the São Tomé scops owl (Otus hartlaubi), São Tomé oriole (Oriolus crassirostris) and giant weaver (Ploceus grandis). On both islands the remaining areas of primary forest need immediate protection and suitable boundaries have been designated under the Zona Ecológica plan. Fortunately, except for an important area around Lagôa Amélia, primary forest is not under immediate threat, although a variety of pressures are likely to increase. In conjunction with the protection of primary forest, a plant for managing the remaining timber resource on the islands will be a vital requirement, particularly if areas of shade forest, an important habitat for endemic bird species and a potentially valuable economic resource, are to be conserved and sustainably managed.     

Predation on and by pelagic Turbellaria in some lakes in Brazil

Planktonic Turbellaria are of common occurrence in both natural and man-made lakes in Brazil. Experiments were performed in 1987 and 1989 to determine which zooplankton species are consumed by predatory Mesostoma sp. from three natural lakes in the Rio Doce Valley. Experiments were also performed in 1989 with a yet unidentified flatworm from Barra Bonita reservoir. Both predators consumed Daphnia and Ceriodaphnia at a high rate: 4 individuals per day in the case of Mesostoma sp., a large species and 1.5 ind day^–1 in the case of the smaller species from Barra Bonita reservoir. Consumption of copepod nauplii, copepodids and adults was much lower, and Ostracoda were not consumed at all. Experiments on food selectivity showed a clear preference by the flatworms for cladocerans.In the lakes studied, flatworms are heavily preyed upon by larvae of Chaoborus and by Mesocyclops species.Turbellaria densities in the natural lakes were around 300 individuals per cubic meter, whereas in Barra Bonita reservoir, 1000 individuals per cubic meter was a mean value in a fifteen days study.Federal University of São Carlos - Laboratory of LimnologyUniversity of São Paulo - Canter of Water Resource and Applied EcologyPost-graduate student - University of São Paulo     

Ecology and dynamics of two intertidal algal communities on the littoral of the island of São Miguel (Azores)

The intertidal benthic algal communities of two sites located on opposite coasts of São Miguel Island (Azores), were studied over a 2-year period (September 1993–September 1995). At both sites (São Roque on the south coast and São Vicente on the north), the littoral region was surveyed from the upper intertidal down to the sublittoral fringe. The survey revealed five distinct zones, with a variable degree of overlapping. The two upper zones were characterized by animals (littorinids and barnacles, respectively). Lower down, algal communities formed three distinct zones: an upper Fucus spiralis/Gelidium microdon association, a more extensive turf zone, and a belt featuring erect or frondose algae. Upper in the eulittoral, the turf was mainly monospecific, and dominated by Caulacanthus ustulatus. The lower eulittoral turf was dominated by articulated coralline algae, the associated species differing between the two sites studied. Mainly erect algae (Pterocladiella, Asparagopsis, etc.) occurred furthest down the shore and extended into the nearby shallow sublittoral. Two intertidal communities were studied at each locality: the upper eulittoral (Caulacanthus turf in São Roque and the Fucus spiralis/Gelidium microdon association at São Vicente), and the lower eulittoral (the coralline turf). The lower littoral communities had a higher algal diversity. A general pattern was observed in the seasonal variation of biomass: the lower levels exhibited the higher values in late summer/early autumn, the period in which the upper levels had the lowest standing crops. Physical factors are proposed to account for this. No significant inter-annual variations could be detected, indicating relatively stable communities, at least on a short-term basis.     

Predation on Ceriodaphnia cornuta and Brachionus calyciflorus by two Mesocyclops species coexisting in Barra Bonita reservoir (SP,Brazil)

Feeding experiments with two species of carnivorous copepod, Mesocyclops longisetus (Thiebaud) and Mesocyclops kieferi Van de Velde from Barra Bonita, a eutrophic reservoir in São Paulo, Brasil, were performed using two common types of prey: Ceriodaphnia cornuta, a cladoceran, with a mean body length of 464 µm (including spines) or 393 µm (without spines), and Brachionus calyciflorus, a rotifer with a mean body length of 350 µm (including spines) or 279 µm (without spines).Both species showed higher consumption rates on Brachionus than on Ceriodaphnia. For Mesocyclops longisetus, the average rates were: 2.19 prey ind^–1 h^–1 (Brachionus), and 1.30 prey ind^–1 h^–1 (Ceriodaphnia). For Mesocyclops kieferi, the rates were 1.85 prey ind^–1 h^–1 (Brachionus) and 0.60 prey ind^–1 h^–1 (Ceriodaphnia). These experimental data are discussed with reference to the dynamics of the predator and prey populations in the reservoir.Laboratorio de Limnologia, Departamento de Ciencias Biologicas, Universidade Federal de São CarlosCentro de Recursos Hidricos e Ecologia Aplicada Lab. de Limnologia, Departamento de Hidraulica e Saneamento, Escola de Engenharia de São Carlos, Universidade de São Paulo     

Exploring the application of biostimulation strategy for bacteria in the bioremediation of industrial effluent

The purpose of this study was to isolate and characterise toxic element-resistant bacteria from acid mine drainage water and to apply them in the bioremediation of industrial effluent, as well as to identify optimal effluent:nutrient concentration for onsite biostimulation strategy. Wastewater samples were collected from acid mine drainage and industry. Inductively coupled plasma optical emission spectroscopy (ICP-OES) was employed for elemental composition analysis. Isolated bacterial strains were characterised using molecular methods. Bioremediation assays were employed to determine the extent of bacterial tolerance and removal of toxic elements using a biostimulation strategy employing minimal salt medium (MSM) at varied concentrations and positive and negative controls of only MSM and industrial effluent, respectively. Two bacterial strains demonstrated resistance to toxic elements, Bacillus sp. MGI101 and Lysinibacillus sp. MGI102 both isolated from the AMD sites. However, no observable growth of toxic metal-resistant bacteria was obtained from the industrial effluents. Bacterial strains MGI101 and MGI102 demonstrated high resistance to target toxic elements during the screening and tolerance assays. Remarkably, Bacillus sp. MGI101 demonstrated greater ability to remove toxic elements including arsenic, chromium, zinc, copper and aluminium in undiluted solutions of the industrial effluent, with its highest removal capacity observed at > 60% for arsenic and aluminium. Both Bacillus sp.MGI101 and Lysinibacillus sp. MGI102 demonstrated varied abilities for the removal of toxic elements from dilution concentration of effluent mixed with MSM. However, the optimal dilution ratio observed in this experiment was 5:15 (effluent:MSM). Overall results demonstrated that isolated bacterial strains have the potential to be employed in bioremediation programmes of acid mine drainages and multi-element contaminated water.

     

Feeding in adult females of Argyrodiaptomus furcatus (Sars,1901), Copepoda-Calanoida,of Lobo Reservoir (Broa), São Carlos,São Paulo,Brazil

The aim of this work was to study the feeding process of Argyrodiaptomus furcatus (Copepoda-Calanoida) in the Lobo Reservoir (São Carlos, SP, Brazil). Non-ovigerous adult females and the ¹⁴C technique were used to measure filtration and assimilation rates. The diet contained the following phytoplankton species: Chlamydomonas sp., Ankistrodesmus gracilis, Melosira italica, Scenedesmus quadricauda and Chlorella zoofingensis.The experiments were carried out using unialgal and mixed cultures during 2-, 4- and 6-h periods. The results of the filtration and assimilation rates were compared.The data obtained by statistical tests showed the highest assimilation rate in Argyrodiaptomus furcatus fed Chlamydomonas sp. in both culture types. However, Chlorella zoofingensis and Scenedesmus quadricauda were the most filtered species in unialgal and mixed cultures, respectively. A higher filtration rate was observed for the 2-h period than for the 4- and 6-h periods.Culture agent was also important. Higher assimilation and filtration rates were obtained during the log phase of Chlamydomonas sp. growth than during the stationary phase.     

Genomic signatures and co‐occurrence patterns of the ultra‐small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle

The size of bacterial genomes is often associated with organismal metabolic capabilities determining ecological breadth and lifestyle. The recently proposed Candidate Phyla Radiation (CPR)/Patescibacteria encompasses mostly unculturable bacterial taxa with relatively small genome sizes with potential for co‐metabolism interdependencies. As yet, little is known about the ecology and evolution of CPR, particularly with respect to how they might interact with other taxa. Here, we reconstructed two novel genomes (namely, Candidatus Saccharibacter sossegus and Candidatus Chaer renensis) of taxa belonging to the class Saccharimonadia within the CPR/Patescibacteria using metagenomes obtained from acid mine drainage (AMD). By testing the hypothesis of genome streamlining or symbiotic lifestyle, our results revealed clear signatures of gene losses in these genomes, such as those associated with de novo biosynthesis of essential amino acids, nucleotides, fatty acids and cofactors. In addition, co‐occurrence analysis provided evidence supporting potential symbioses of these organisms with Hydrotalea sp. in the AMD system. Together, our findings provide a better understanding of the ecology and evolution of CPR/Patescibacteria and highlight the importance of genome reconstruction for studying metabolic interdependencies between unculturable Saccharimonadia representatives.     

安徽省某酸性矿山废水坑湖中细菌群落的垂向分布特征及其影响因素

【目的】探究酸性矿山废水(acid mine drainage,AMD)坑湖中细菌群落沿垂向不同水深的分布规律及与环境因子之间的相互作用。【方法】采用16SrRNA基因高通量测序技术,对安徽省某AMD坑湖中6条采样垂线不同水深深度的细菌群落进行调查,同时测定水质理化指标,使用统计学软件分析细菌和地化参数间的联系。【结果】AMD坑湖中水质特征及细菌群落结构出现明显分层现象,自上而下溶解氧降低而pH和多种金属离子浓度增加,微生物群落结构发生变化,多样性和部分物种的丰度增大。细菌群落组成上,表层水域以Proteobacteria (Alpha、Gammaproteobacteria)和Acidobacteria占据主导地位;中下层水域则由Firmicutes、Acidobacteria、Actinobacteria、Gammaproteobacteria和Patescibacteria等共同主导。统计分析结果表明,TN、DO、ORP、pH、Fe、Mn、Al和Zn与嗜酸细菌丰度显著相关,是细菌空间分布的主要限制因素。【结论】AMD坑湖中水质理化特征和细菌群落分布在垂向空间上存在显著差异,群落的...     

Song dialects on the Atlantic islands: goldcrests of the Azores ( Regulus regulus azoricus, R. r. sanctae-mariae, R. r. inermis)

Territorial songs in island populations of songbirds are often highly divergent from those of neighbouring continental relatives. This is shown for the three goldcrest subspecies (Regulus regulus azoricus, R. r. sanctae-mariae and R. r. inermis) endemic on six islands of the Azorean archipelago. All investigated populations display a high intra- and inter-individual acoustic variation. On each island, up to six different song types have been found; and a single male sings up to three types. In contrast, all northwestern European populations of R. r. regulus and R. r. anglorum share only a single song type. In playback experiments, none of 18 tested dialect songs of Azorean goldcrests evoked notable territorial reaction in German and Czech goldcrest males (ssp. regulus). Two differing dialect groups of the goldcrest can be distinguished on the Azores. Populations of the eastern islands, São Miguel and Santa Maria, share common song types which are not found on the islands of the central and western groups. Dialect repertoires on the westernmost islands, Flores, Faial and Pico, are dominated by a different song type. In the geologically younger western crater of São Miguel, both western and eastern song types coexist. Acoustic similarities to a population from neighbouring Terceira suggest the western part of São Miguel as the origin for the westward expansion of R. regulus on the Azores.     

Habitat and Population Data of Troglobitic Armored Cave Catfish, Ancistrus Cryptophthalmus Reis, 1987, from Central Brazil (Siluriformes: Loricariidae)

Population ecology of the troglobitic armored catfish, A. cryptophthalmus, from caves in São Domingos karst area of central Brazil, was studied in a two-census capture-mark-recapture study carried out during the dry season of 1999. Like many loricariids, including epigean Ancistrus catfishes from that area, A. cryptophthalmus is a typical bottom-dweller with a strong preference for rocky substrates in fast-flowing stream sectors. Relatively high population densities, when compared to other cavefishes, were recorded in the studied cave sections: 0.9 individuals m^–2 in Angélica Cave and 0.5 individuals m^–2 in Passa Três Cave. Passa Três Stream is a small tributary of the São Vicente Cave system, and the estimated population for Passa Três Cave (ca. 2000 m long) is around 1000 individuals. On the other hand, the large Angélica Cave Stream (8 km long) harbors a very large population, conservatively estimated at 20 000 individuals. No fish movements of distances longer than 100 m were recorded in the 40-day period. In Passa Três Cave, a few movements of distances up to 60 m were detected. Proportion of mature females in Angélica Cave was higher than in Passa Três Cave, possibly reflecting a greater food availability in the first cave. Mean individual growth rates in Angélica Cave (1.35 mm month^–1 for size class <41 mm SL, 0.17 mm month^–1 for size class >41 mm SL) point to relatively high longevities, possibly attaining 15 years.     

Microbial Community Composition in Acid Mine Drainage Lake of Xiang Mountain Sulfide Mine in Anhui Province,China

Acid mine drainage (AMD) lake of Xiang Mountain in Anhui Province, China, was characterized by acidic waters (pH around 2.8) containing high concentrations of soluble metals and sulfate. To investigate the function and dynamics of this extreme ecosystem, four water samples were collected from the lake in the fall of 2010. The acidophilic community structure was analyzed by molecular approaches, and bacterial and archaeal clone libraries of 16S rRNA genes were constructed. In contrast to dominance of chemolithotrophic acidophiles in typical AMD environments, autotrophic iron/sulfur-oxidizing bacteria were detected in only one sample with low abundance. Unexpectedly, the Cyanobacteria group was the predominant in all four samples (54.9%?77%). Chemoheterotrophs Acidiphilium and Acidisphaera were also abundant. These two heterotrophic groups contain bacteriochlorophyll that can perform photosynthesis, an advantage to grow and survive in such oligotrophic acidic environments. Only two clone sequences related to Legionella (2.8% of the total clones) were recovered from one sample in sharp contrast to its higher abundance (12.7%) in the summer of 2009. All archaeal sequences were affiliated to the phylum Crenarchaeota. The results of statistical analysis suggested that the water chemistry of the AMD lake controlled microbial composition of the AMD ecosystem.     

Effect of carbon source on the β-glucosidase system of the thermophilic fungus Humicola grisea

H. grisea produced an extracellular -glucosidase (EC 3.2.1.21) at high activity in media supplemented with carboxymethyl cellulose (CMC) or cellobiose. Cellobiose-induced -glucosidase was insensitive to glucose repression whereas that of CMC-supplemented cultures was partially repressed. Molecular sieving revealed three main active components (M_r 50, 128 and 240 kDa). Glucose competitively inhibited -glucosidase activities with K_i values of 0.9mM and 3.3mM (extracellular) and 10.2mM and 22.6mM (cytosolic), induced in the presence of CMC or cellobiose respectively.The authors are with the Departamento de Biologia, Faculdade de Filosofia. Ciências e Letras de Ribeirão Preto, Universidade de São Paulo-14040-901 Ribeirão Preto, São Paulo, Brasil;     

Improved culture media for growth of Bradyrhizobium japonicum

A freshly-prepared yeast extract at 30 or 50 g/l improved the growth of Bradyrhizobium japonicum SEMIA 587 in a 5-l stirred fermenter. Monosodium glutamate or a commercial yeast extract at 2.0 g/l almost doubled cell mass productivity and cell viability when added at the end of the first exponential growth phase.The authors are with the Divisão de Quimica, Agrupamento de Biotecnologia, Instituto de Pesquisas Tecnológicas do Estado de São Paulo, S/A.-IPT-Cidade Universitária s/n., Caixa Postal 7141, CEP 01064-970, São Paulo, SP, Brazil     

Population Variation in Patch and Party Size in Muriquis (Brachyteles arachnoides)

We examined the relationship between food patch size and feeding party size with comparative data from two populations of muriquis (Brachyteles arachnoides) in the 37,797-ha forest at the Parque Estadual de Carlos Botelho (PECB), São Paulo, and the 800-ha forest at the Estação Biológica de Caratinga (EBC), Minas Gerais. Precipitation was more abundant and less seasonal at PECB than EBC, and the density of large trees (>25.0 cm) was higher at PECB (206 ha ^–1 ) than at EBC (132 ha ^–1 ). At both sites, the size of feeding parties is positively related to the size of food patches. As predicted, food patches at PECB are significantly larger than those at EBC for both fruit and leaf sources. Contrary to expectations, feeding parties were larger at EBC than PECB. The higher population density of muriquis and sympatric primates at EBC may make large associations more advantageous to these muriquis than to muriquis living at lower population densities in PECB.     

Age,area, and acheiropody

Summary Analysis of the geographic distribution of acheiropody suggests spread from São Paulo along the São Francisco valley at a rate consistent with current parent-offspring distribution and 20 generations of gene flow.PGL No. 233. This work was supported by Grants GM 17173 from the U.S. National Institutes of Health and Biologicas 79/0482 from São Paulo Research Foundation (FAPESP).     

Humic substance mineralization in a tropical oxbow lake (São Paulo,Brazil)

We evaluated the mineralization rates of humic substances in Infernão oxbow lake (State of São Paulo, Brazil). Experiments were conducted under aerobic and anaerobic conditions using fulvic acid and humic acid from four sources: Scirpus cubensis and Cabomba piauhyensis leachate submitted to a 120-day degradation process, sediment, and dissolved organic matter from the lake water. A fixed amount of substrate was added to 450 ml of water from Infernão lake, filtered over glass wool. After adding substrate, the flasks were incubated at 21.0°C under aerobic and anaerobic conditions. The dissolved organic carbon was monitored during 95 days. The results were fitted to first-order kinetics model, which pointed to one labile and one refractory fraction. The refractory fractions predominated, ranging from 71.4 to 84.3% for fulvic acid and from 73.4 to 85.0% for humic acid. Mineralization rates of the labile fractions of dissolved organic carbon were higher under aerobic than anaerobic conditions, while the converse was true for the refractory fractions.     

B Chromosome Polymorphism in the Fish, Astyanax scabripinnis

Four populations of Astyanax scabripinnis (Pisces, Characidae) were analyzed for B chromosome features. This species contains a metacentric macrochromosome (B_M), similar in size to the first chromosome of the karyotype, besides two variant forms, a large submetacentric (B_SM) and a small metacentric (B_m), both showing a reduced frequency. These variant forms were observed only in the populations from the Campos do Jordão region (São Paulo State, Brazil), although not present in all the populations sampled. The three B chromosome forms are heterochromatic and at least the B_M and B_SM are also GC-rich, as evidenced by C-banding and chromomycin A₃ staining. In spite of the morphological similarity between the B_M form and the first chromosome pair, they differ in the G-banding pattern, which does not favor a possible relationship among these chromosomes. FISH with a telomeric DNA probe evidenced signals on the terminal region of all chromosomes, including the Bs. Interstitial telomeric bands, indicative of some chromosomal rearrangements such as translocation or tandem fusion in the origin of the B chromosomes, were not observed. B_SM and B_m are probable derivative B chromosome forms from an ancestral B_M chromosome, showing a restricted occurrence and low frequency in the populations.     

Estimation of root nodule development by <Emphasis Type="Italic">Rhizobium</Emphasis> sp. Using hydroponic culture

A nitrogen-fixing bacterium isolated from the root nodules of a cultivated leguminous plant, soybean (Glycine max L.), was cultivable and was identified as Rhizobium sp. Bacterial species isolated from root nodules of wild leguminous plants including -bush clover, white dutch clover, wisteria, and false acacia were identified as Burkholderia cepacia, Pseudomonas migulae, Pseudomonas putida, and Flavobacterium sp, respectively, all of which are heterotrophic bacteria that grow in the rhizosphere. Temperature gradient gel electrophoresis (TGGE) 16S-rDNA bands extracted directly from the bacterial population within the root nodules of the wild leguminous plants were identified as Rhizobium sp, Mesorhizobium sp, and Bradyrhizobium sp. none were cultivable. Rhizobium sp. isolated from soybean root nodule generated approximately 48 and 19 mg/L of ammonium in glucose- and starch-defined medium, respectively, during 8 days of growth. The growth rate of Rhizobium sp. was increased by the addition of yeast extract but not by the addition of ammonium. K _m and V _max for starch saccharification measured with the extracellular crude enzyme of Rhizobium sp. were 0.7556 mg/L and 0.1785 mg/L/min, respectively. The inoculation of Rhizobium sp. culture into a hydroponic soybean plant culture activated root nodule development and soybean plant growth. The inoculated Rhizobium sp. survived for at least 4 weeks, based on the TGGE pattern of 16S-rDNA. The 16S-rDNA of Rhizobium sp. isolated from newly developed root nodules was homologous with the inoculated species.     

Effects of genotoxic agents on his + revertants and survival of spores of Streptomyces aureofaciens

The effects of u.v. light and of several chemical agents on spores of the tetracycline producer Streptomyces aureofaciens MT1 were studied using survival curves and induction of histidine prototrophic revertants (his ⁺). Spores were highly resistant to u.v.; NTG induced most his ⁺ revertants. 4-Nitroquinoline-1-oxide and methyl methanesulphonate also gave good yields of revertants. Whereas ethyl methanesulphonate had the least effect on inducing the revertants.M. Marins is with the Department of Biochemistry, Institute of Chemistry, University of São Paulo, SP, Brazil. S.O.P. Costa and G. Padilla are with the Department of Microbiology, Biomedical Science Institute, University of São Paulo, Avenida Prof. Lineu Prestes 1374, SP, Brazil, CEP 05508-900