Stable isotope ratios of soil carbonate and soil organic matter as indicators of forest invasion of prairie near Ames,Iowa

Stable isotope ratios of pedogenic carbonate and organic matter were measured in a prairie-transition-forest soil biosequence near Ames, Iowa to determine the vegetation succession. The modern vegetation is dominated by non-native C₃ plants which have been introduced by agricultural practices. The ¹³C values of soil organic matter from the prairie and forest endmembers indicate C₄ and C₃ dominated ecosystems, respectively, during the accumulation of soil organic matter. Pedogenic carbonate from all soils, including rare pedogenic carbonate from the forested soil, has an average ¹³C of-2.0, indicating that the carbonate formed under a C₄ vegetation. These results indicate that the ecosystem was a C₄-dominated prairie and therefore suggest a recent arrival of forests and other C₃ plants in the area. This study also implies that the primary features of the transitional Lester soil series, which has soil properties intermediate between Alfisols and Molisolls, formed under prairie conditions and were overprinted by an invading forest.     

Forest savanna ecotone dynamics in India as revealed by carbon isotope ratios of soil organic matter

Linear programming models of diet selection (LP) have been criticized as being too sensitive to variations in parameter values that have not been or may not be able to be measured with a high degree of precision (small standard error). Therefore, LP's predictions have been questioned, even though the predicted diet choices agree very well with observations in 400 published tests. The philosophical and statistical aspects of this criticism of LP are reviewed in light of the ability to test any nontrivial ecological theory. It is argued that measures of error in field data may not meet simple statistical definitions, and thereby, may make sensitivity analyses that use the error measures overly conservative. Furthermore, the important issue in testing ecological theory may not be the statistical confidence in a single test, but whether or not the theory withstands repeated tests.     

Links between plant community composition,soil organic matter quality and microbial communities in contrasting tundra habitats

Plant communities, soil organic matter and microbial communities are predicted to be interlinked and to exhibit concordant patterns along major environmental gradients. We investigated the relationships between plant functional type composition, soil organic matter quality and decomposer community composition, and how these are related to major environmental variation in non-acid and acid soils derived from calcareous versus siliceous bedrocks, respectively. We analysed vegetation, organic matter and microbial community compositions from five non-acidic and five acidic heath sites in alpine tundra in northern Europe. Sequential organic matter fractionation was used to characterize organic matter quality and phospholipid fatty acid analysis to detect major variation in decomposer communities. Non-acidic and acidic heaths differed substantially in vegetation composition, and these disparities were associated with congruent shifts in soil organic matter and microbial communities. A high proportion of forbs in the vegetation was positively associated with low C:N and high soluble N:phenolics ratios in soil organic matter, and a high proportion of bacteria in the microbial community. On the contrary, dwarf shrub-rich vegetation was associated with high C:N and low soluble N:phenolics ratios, and a high proportion of fungi in the microbial community. Our study demonstrates a strong link between the plant community composition, soil organic matter quality, and microbial community composition, and that differences in one compartment are paralleled by changes in others. Variation in the forb-shrub gradient of vegetation may largely dictate variations in the chemical quality of organic matter and decomposer communities in tundra ecosystems. Soil pH, through its direct and indirect effects on plant and microbial communities, seems to function as an ultimate environmental driver that gives rise to and amplifies the interactions between above- and belowground systems. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Dynamics of C, N, P and microbial community composition in particulate soil organic matter during residue decomposition

Decomposing residues can be an important source of nutrients for plants, especially of N and P, but the relationship between N and P release and microbial community dynamics have rarely been studied. Two pea (Pisum sativum L.) residues with contrasting chemical composition, shoots from flowering pea (Pea-Y) with 2.9 mg P and 36 mg N kg⁻¹ and from mature pea (Pea-M) with 0.3 mg P and 13 mg N kg⁻¹, were added at a rate of 20 g kg soil⁻¹ to a sandy soil low in nutrients. Particulate organic matter (POM) was isolated on days (d) 0, 5, 15, 28, 42 and 61 after residue addition and analysed for C, N, P and microbial community structure (fatty acid methyl ester analysis). The recovery of POM from residue-amended soils decreased over time to 30–40% of added amounts for both residues. Apart from d 0, the N concentration in POM was lower in residue-amended soil than in the control. Due to a rapid decrease in P concentration during the first 5 days in Pea-Y and a slow increase over the whole experiment in Pea-M, P concentrations in POM on d 61 were similar in all treatments. In Pea-Y, the dynamics of C, N and P were coupled, with amounts of C, N and P decreasing during the first 15 days and remaining stable thereafter. In Pea-M, a steady loss of C from POM was contrasted by a slight increase in P. As a result, the C/P ratio decreased from 1,330 on d 0 to 390 on d 61. The C/N ratio of Pea-M decreased only during the second phase of decomposition. The different nutrient dynamics in Pea-Y and Pea-M led to similar amounts of N and P in POM towards the end of the incubation. Microbial community composition in the POM in Pea-Y and Pea-M remained distinct from the control, even though it changed over time. POM was shown to be an important source of potentially available nutrients after addition of plant residues. In the unamended soil, stable nutrient amounts in POM suggested very low net nutrient release from native POM compared to POM after residue addition.     

Beaver alter stable carbon isotope ratios of benthic particulate organic matter

Beaver are well known to influence the geomorphology and geochemistry of boreal waters, in addition to being prominent vectors in the selective import of deciduous coarse woody debris (CWD). Because the stable carbon isotope ratios of deciduous trees are lower than those of coniferous trees, the possibility exists that the ¹³C values of particulate organic matter near beaver lodges may differ from those characteristic for littoral regions without beaver activity. In agreement with this supposition, ¹³C was found to significantly increase in progressively smaller size fractions of CWD collected from near lodges, probably due to the more rapid breakdown, decomposition and disappearance of deciduous material.     

土地利用方式对土壤有机质的影响

通过对地带性常绿阔叶林、杉木人工林、农田、竹林等不同土地利用方式下土壤有机质总量、活性有机质及其组分的研究,发现土地利用方式对土壤有机质和活性有机质各组分的影响差异显著,其中阔叶林含量最高,杉木人工林低于阔叶林,竹林和农田最低。这些差别主要是由于凋落物的数量、质量以及各种管理措施不同所致。     

Carbon isotope ratios of amylose,amylopectin and mutant starches

Carbon isotope ratios (expressed as δ¹³C values) were determined for various sources of starch and the starch fractions amylose and amylopectin. The δ¹³C values of amylose were consistently less negative, 0.4–2.3 ‰, than those of amylopectin in kernal starch from maize (Zea mays) and barley (Hordeum vulgare) and in tuber starch from potato (Solanum tuberosum). Kernel starch isolated from the maize mutants wx1 and ae1, with known genetic lesions in the starch biosynthetic pathway, also showed significant differences in δ¹³C values. Collectively, these results suggest that variation in carbon isotope ratios in the amylose and amylopectin components of starch may be attributed to isotopic discrimination by the enzymes involved in starch biosynthesis.     

流溪河水库颗粒有机物及浮游动物碳、氮稳定同位素特征

为了解影响流溪河水库颗粒有机物(POM)碳和氮稳定同位素(δ¹³C和δ¹⁵N)变化的主要因素,及其与浮游动物δ¹³C和δ¹⁵N之间的关系,于2008年5月至12月份对POM及浮游动物的δ¹³C和δ¹⁵N进行了研究。颗粒有机物碳稳定同位素(δ¹³C_POM)和氮稳定同位素(δ¹⁵N_POM)的季节性变化幅度分别为5.1‰和2.2‰,5月和7月份δ¹³C_POM较高,而在10月和12月份降低,这主要与降雨将大量外源有机物带入水库而引起的外源及内源有机物在POM组成上发生变化有关。δ¹⁵N_POM总体呈上升趋势,可能是由降雨引起的外源负荷、初级生产力、生物固氮等因素共同作用的结果。浮游动物的δ¹³C及δ¹⁵N总的变化趋势与POM的相似,也具有明显的季节性变化,食物来源的季节变化可能是造成其变化的主要原因。在5月份,浮游动物的食物来源为POM中δ¹³C较高的部分,也就是外源有机物,而在10月及12月份,其食物则可能主要为浮游植物。     

Carbon isotope composition in landscape components and its changes under different ecological conditions

The composition of stable carbon isotopes in plants, plant litter, leaf litter, and soil organic matter was studied experimentally in the western part of the northern foothills of the Caucasus and mountainsides. It was found that the changes in carbon isotope composition depending on the vertical zonation do not exceed 8‰ and depend on the type of C3 plant communities, its presence in biogeocenosis components (living matter, plant litter, soil organic matter), and the degree of moistening of the plot studied.     

免耕覆盖及有机肥施用对土壤真菌群落组成及多样性的影响

为揭示土壤真菌群落对免耕、覆盖及有机肥施用的响应机制,在宁夏南部山区冬小麦农田连续3年采用免耕覆盖+施有机肥(NF)、免耕覆盖+不施有机肥(NC)、传统耕作不覆盖+施有机肥(TF)和传统耕作不覆盖+不施有机肥(TC)4个处理,依托Illumina MiSeq 高通量测序平台,研究了土壤真菌群落组成、多样性及其与土壤环境因子间的关系。结果表明: 4个处理共获得3490个可操作分类单元(OTUs),其中含有一些未知真菌。在已知的真菌群落中,子囊菌门和担子菌门为优势菌门,其相对丰度占总丰度的82.1%～94.2%,且TF处理下子囊菌门座囊菌纲的相对丰度最高,NF处理下担子菌门银耳菌纲的相对丰度最高。4个处理真菌群落多样性指数(Shannon和Simpson指数)依次为NC>TC>NF>TF。多元分析结果表明,微生物生物量碳是影响担子菌门和接合菌门相对丰度的主要因素,而土壤全磷、速效钾和速效磷含量高低是驱动子囊菌门真菌相对丰度变化的关键因素。在宁夏南部山区推广以免耕覆盖并施用有机肥的保护性耕作措施有利于提高土壤真菌群落多样性。     

Isotope alteration caused by changes in biochemical composition of sedimentary organic matter

Stable carbon (C) and nitrogen (N) isotope ratios of sedimentary organic matter (OM) can reflect the biogeochemical history of aquatic ecosystems. However, diagenetic processes in sediments may alter isotope records of OM via microbial activity and preferential degradation of isotopically distinct organic components. This study investigated the isotope alteration caused by preferential degradation in surface sediments sampled from a eutrophic reservoir in Germany. Sediments were treated sequentially with hot water extraction, hydrochloric acid hydrolysis, hydrogen peroxide oxidation and di-sodium peroxodisulfate oxidation to chemically simulate preferential degradation pathways of sedimentary OM. Residue and extracts from each extraction step were analyzed using elemental analyzer-isotope ratio mass spectrometry and solid-state ¹³C nuclear magnetic resonance spectroscopy. Our results show that stable C and N isotope ratios reacted differently to changes in the biochemical composition of sedimentary OM. Preferential degradation of proteins and carbohydrates resulted in a 1.2‰ depletion of ¹³C, while the isotope composition of ¹⁵N remained nearly the same. Sedimentary δ¹⁵N values were notably altered when lignins and lipids were oxidized from residual sediments. Throughout the sequential fractionation procedure, δ¹³C was linearly correlated with the C:N of residual sediments. This finding demonstrates that changes in biochemical composition caused by preferential degradation altered δ¹³C values of sedimentary OM, while this trend was not observed for δ¹⁵N values. Our study identifies the influence of preferential degradation on stable C isotope ratios and provide additional insight into the isotope alteration caused by post-depositional processes.

     

Effects of soil organic matter and bacterial community shift on bioremediation of diesel-contaminated soil

Bioremediation of diesel-contaminated soils were applied to investigating effects of soil organic matter (SOM) and bacterial community shift. Soil samples were artificially contaminated with diesel oil, ranging from 4000 to 12000 mg/kg soil, remediated with laboratory-scale landfarming batch applications. The SOM levels in our experiment were 2.3% (presented as SOM15), 8.9% (SOM092), and 11.8% (SOM125). Based on each of the SOM levels, bioremediation approaches of bioaugmentation (BA015, BA092, and BA125) and using indigenous microorganisms as control groups (CT015, CT092, and CT125) were tested. After about 300-day operation, total petroleum hydrocarbon (TPH) degradation efficiency became 73%, 63%, and 59% in SOM015, SOM092, and SOM125, respectively. Their 1st order degradation rates also reduced with the increase of SOM. We preliminarily concluded that SOM affected the TPH degradation efficiency and 1st degradation rates. With a logarithm transformation, the degradation pattern of SOM092 and SOM125 found to resemble each other. No apparent improvement was found from the BA batches. Our Intergenic spacer (ITS) microarray result indicated the existence of diesel-degrading bacteria in the indigenous communities. Nonmetric multidimensional scaling (MDS) based on terminal restriction fragment length polymorphism (T-RFLP) data indicated that 1) CT community became similar to BA community, once the 1st degradation stage started, impling an activation of the indigenous bacteria; 2) the degradation stage affected the community dynamics more than the SOM or the remediation approaches could do, and 3) both BA092 and BA125 located in the same cluster on the MDS plot all the time, revealing the similar communities. The similar communities might cause the comparable degradation patterns in SOM092 and SOM125. The bacteria community shift found useful in explaining the TPH degradation performance.     

Carbon, nitrogen, and hydrogen isotope ratios in creekside trees in western Kansas

Three species of creekside trees were monitored weekly during the 2007 and 2008 growing seasons. The 2007 growing season was wet early, but became drier as the season progressed. In contrast, the 2008 growing season was dry early, but became wetter as the season progressed. Creekside trees were measured to determine effects of changing water regimes on leaf-level processes. Lonicera tatarica plants were compared to Morus alba and Celtis occidentalis trees. Leaves were monitored for changes in stomatal conductance, transpiration, δ¹³C, δ¹⁵N, δD, leaf temperature, and heat losses via latent, sensible, and radiative pathways. δD of creek water was more similar to ground water than to rain water, but the creek was partially influenced by summer rains. δD of bulk leaf material was significantly higher in individuals of C. occidentalis compared to the other species, consistent with source water coming from shallower soil layers. Despite decreasing water levels, none of these tree species showed signs of water stress. There were no significant differences between species in stomatal conductance or transpiration. Leaf δ¹³C was significantly lower in individuals of L. tatarica compared to the other species. Differences in δ¹³C were attributed to a lower carboxylation capacity, consistent with lower leaf nitrogen content in L. tatarica plants. Leaf δ¹⁵N was significantly lower in individuals of L. tatarica compared to the other species, consistent with uptake of a different N source. Two of the three sites appeared to be affected by inorganic N from fertilizer run-off. Evidence is presented that these species acquired water and nitrogen from different sources, resulting from differences in root uptake patterns.     

Bamboo invasion of broadleaf forests altered soil fungal community closely linked to changes in soil organic C chemical composition and mineral N production

Plant and Soil - Loss of biodiversity caused by intensive agriculture is a major worldwide concern. Crop rotation can enhance crop productivity and increase soil microbial diversity. However, the...     

A farm-scale investigation of the organic matter composition and soil chemistry of Andisols as influenced by land use and management

Andisols are characterised by having abundant reactive Al in the form of short-range ordered (SRO) Al constituents and organo-Al complexes, which facilitates the accumulation of soil organic matter (OM). However, recent studies of New Zealand pastoral systems have reported loss of carbon (C) from Andisols when under intense management. This study compares the organic and inorganic chemistry of Andisols on two adjacent pasture sites under different pastoral management regimes (Paddock 2 being more intensively managed than Paddock 1), as well as under a nearby pine stand (Forest). Mean soil pH-H₂O in Forest (5.3) was significantly lower (P?<?0.05) than that in Paddock 1 (5.7), which itself was significantly lower (P?<?0.05) than in Paddock 2 (6.1). Soil C concentrations were significantly higher (P?<?0.05) in the soils under pasture than under pine (63.8 g C/kg), and C in Paddock 1 (98.1 g C/kg) was significantly higher (P?<?0.05) than in Paddock 2 (84.1 g C/kg). The ratio of Al in organo-Al complexes (as estimated with sodium pyrophosphate) to the sum of Al in both SRO and organo-Al complexes (Al_p/Al_o) was significantly smaller (P?<?0.05) as the alkalinity of the soils increased (0.38, 0.23, 0.16 for Forest, Paddock 1 and Paddock 2, respectively). At the molecular level, soils under Forest had a larger relative contribution of degraded products of plant polysaccharides than those under pasture, while these had a larger contribution of fresh (e.g. cellulose and cutan/suberan aliphatic structures) and N-rich OM (e.g., microbial fingerprints, denoting a high microbial activity). Dissolved organic C content in the rhizosphere of pasture species was similar between paddocks, but Paddock 2 had a significantly (P?<?0.05) greater contribution of organic acids of MW?<?500 Da and higher pH (6.8 vs. 6.2). The results (1) confirm the common enrichment in organic C of New Zealand top soils under pasture compared to those under pine, and (2) reveal that the changes in the soil chemistry associated with pasture management may weaken the ability of these soils to preserve OM.     

长期施肥下农田土壤-有机质-微生物的碳氮磷化学计量学特征

探讨外源养分的输入对土壤系统内碳、氮、磷化学计量特征的影响,对于深刻认识农田土壤有机碳(C)和养分循环及其相互作用过程具有重要意义。以26年的农田长期定位施肥试验为平台,分析长期不同施肥条件下土壤、有机态及微生物生物量碳、氮、磷含量及其化学计量学特征,并根据内稳性模型y=c x~(1/H)计算其化学计量内稳性指数H。结果表明:与长期撂荒处理(CK_0)相比,种植作物条件下26年化肥配施有机肥处理(MNPK和1.5MNPK)显著降低微生物生物量氮含量,但显著提高了微生物生物量磷的含量。相对于撂荒处理,即使长期配施化肥磷处理(NP、PK、NPK),其土壤有机磷降低显著。对于C∶N比而言,化肥配施有机物料处理(秸秆或有机肥)的土壤C∶N比、有机质C∶N及微生物生物量C∶N比均显著低于化肥处理(N、NP、PK和NPK)。对于C∶P比而言,相对于撂荒处理,26年施用磷肥(化肥磷或有机磷)显著降低了土壤C∶P比和微生物生物量C∶P比,而CK和偏施化肥处理(N、NP和PK)显著降低了土壤有机质C∶P比。对于土壤N∶P比而言,撂荒处理土壤N∶P比显著高于其他处理,而撂荒处理土壤有机质N∶P比显著高于CK和化肥处理,表明不施肥或化肥条件下作物种植加剧了土壤有机质中氮素的消耗。微生物生物量C∶N、C∶P、N∶P比的内稳性指数H分别为0.24、0.75、0.64,不具有内稳性特征。微生物生物量C∶N、C∶P、N∶P比分别与土壤C∶N、C∶P、N∶P比呈显著正相关关系,但与土壤有机质碳氮磷化学计量比之间无显著相关性。表明土壤碳、氮、磷元素的改变会直接导致微生物生物量碳、氮、磷化学计量比的改变,但微生物生物量碳氮磷化学计量比对土壤有机质碳氮磷化学计量比无显著影响,土壤有机质的碳氮磷计量比可能更多是受到作物和施肥等养分管理措施的影响。     

Changes in soil organic matter with cropping as measured by organic carbon fractions and 13C natural isotope abundance

The decline in soil organic matter with cropping is a major factor affecting the sustainability of cropping systems. Changes in total C levels are relativelyinsensitive as a sustainability measure. Oxidation with different strength KMnO₄ has been shown to be a more sensitive indicator of change. The relative size of soil C fractions oxidised by 333 mM KMnO₄ declined with cropping, whilst the relative size of the unoxidised fraction increased. Changes in ¹³C ratio have been used to measure C turnover in systems which include C3 and C4 species.     

Carbon isotopic composition in suspended organic matter and bottom sediments of the East Arctic seas

The samples of water and bottom sediments of the East Siberian and Chukchi Seas collected during the second Russian-American RUSALCA expedition were used to analyze patterns of the isotopic composition of carbon in the organic matter (OM) of suspended material (SOM) and bottom sediments (BOM). Similar to other marine environments, the SOM isotopic composition depended on the ratio between the terrigenous and planktonic OM, both in the water body as a whole and in its parts. Thus, in the East Siberian Sea the carbon of SOM was poorer in ¹³C (??¹³C = ?24.51??) than the open part of the more productive Chukchi Sea (??¹³C = ?22.16??). In the less productive coastal waters of the Chukchi Sea, the ratio of terrigenous OM increased, resulting in a ??¹³C shift to lower values (?23.40??). Due to the influx of reduced products of anaerobic diagenesis of the sediments, elevated total number of microorganisms and dark CO₂ fixation were found in the near-bottom water at the water-sediment biogeochemical barrier. The newly formed biomass of autotrophic microorganisms shifted the carbon isotopic composition of the near-bottom suspended material to more positive ??¹³C values, with the average values of ?23.39 and ?20.37?? for the East Siberian and Chukchi Sea, respectively. Changes in the carbon isotopic composition of OM resulting from microbial activity continued in the upper sediment layers. When the rate of biomass synthesis increased that of biomass consumption, the ¹³C content increased further. At higher rates of OM mineralization, ¹²C accumulated in its remaining part.     

Temperature response of litter and soil organic matter decomposition is determined by chemical composition of organic material

The global soil carbon pool is approximately three times larger than the contemporary atmospheric pool, therefore even minor changes to its integrity may have major implications for atmospheric CO₂ concentrations. While theory predicts that the chemical composition of organic matter should constitute a master control on the temperature response of its decomposition, this relationship has not yet been fully demonstrated. We used laboratory incubations of forest soil organic matter (SOM) and fresh litter material together with NMR spectroscopy to make this connection between organic chemical composition and temperature sensitivity of decomposition. Temperature response of decomposition in both fresh litter and SOM was directly related to the chemical composition of the constituent organic matter, explaining 90% and 70% of the variance in Q₁₀ in litter and SOM, respectively. The Q₁₀ of litter decreased with increasing proportions of aromatic and O‐aromatic compounds, and increased with increased contents of alkyl‐ and O‐alkyl carbons. In contrast, in SOM, decomposition was affected only by carbonyl compounds. To reveal why a certain group of organic chemical compounds affected the temperature sensitivity of organic matter decomposition in litter and SOM, a more detailed characterization of the ¹³C aromatic region using Heteronuclear Single Quantum Coherence (HSQC) was conducted. The results revealed considerable differences in the aromatic region between litter and SOM. This suggests that the correlation between chemical composition of organic matter and the temperature response of decomposition differed between litter and SOM. The temperature response of soil decomposition processes can thus be described by the chemical composition of its constituent organic matter, this paves the way for improved ecosystem modeling of biosphere feedbacks under a changing climate.