Coral reef recovery dynamics in a changing world

Coral reef ecosystems are degrading through multiple disturbances that are becoming more frequent and severe. The complexities of this degradation have been studied in detail, but little work has assessed characteristics that allow reefs to bounce back and recover between pulse disturbance events. We quantitatively review recovery rates of coral cover from pulse disturbance events among 48 different reef locations, testing the relative roles of disturbance characteristics, reef characteristics, connectivity and anthropogenic influences. Reefs in the western Pacific Ocean had the fastest recovery, whereas reefs in the geographically isolated eastern Pacific Ocean were slowest to recover, reflecting regional differences in coral composition, fish functional diversity and geographic isolation. Disturbances that opened up large areas of benthic space recovered quickly, potentially because of nonlinear recovery where recruitment rates were high. The type of disturbance had a limited effect on subsequent rates of reef recovery, although recovery was faster following crown-of-thorns starfish outbreaks. This inconsequential role of disturbance type may be in part due to the role of unaltered structural complexity in maintaining key reef processes, such as recruitment and herbivory. Few studies explicitly recorded potential ecological determinants of recovery, such as recruitment rates, structural complexity of habitat and the functional composition of reef-associated fish. There was some evidence of slower recovery rates within protected areas compared with other management systems and fished areas, which may reflect the higher initial coral cover in protected areas rather than reflecting a management effect. A better understanding of the driving role of processes, structural complexity and diversity on recovery may enable more appropriate management actions that support coral-dominated ecosystems in our changing climate.     

Forests affected by frequent and intense typhoons challenge the intermediate disturbance hypothesis

Tropical cyclones (hurricanes and typhoons) are extreme disturbances that have a significant impact on ecosystem structure and processes. The intermediate disturbance hypothesis (IDH) generalizes disturbance–diversity relationships but its validity is hotly debated. The IDH has been challenged both theoretically and with results from experimental studies; however, few studies have empirically tested the proposed mechanisms of IDH using results from the actual ecosystems. In this commentary, based on empirical observations from studies on the interactions between tropical cyclones and forest dynamics, we outlined seven possible outcomes of gap dynamics and tree diversity as a result of different frequency and intensity combinations. We argue that the lack of distinction and differentiation between disturbance intensity and severity, and the overlooked role of tree mortality, seedling recruitment, and tree adaptations limit the applicability of IDH in predicting the disturbance–diversity relationship. In the era of climate change characterized with more frequent climate extremes and natural disturbances, we should move beyond the generalizations and directly address the processes leading to the observed disturbance–diversity relationships to make reliable predictions. Abstract in Chinese is available with online material.     

Dispersal and neutral sampling mediate contingent effects of disturbance on plant beta‐diversity: a meta‐analysis

A major challenge in ecology, conservation and global‐change biology is to understand why biodiversity responds differently to similar environmental changes. Contingent biodiversity responses may depend on how disturbance and dispersal interact to alter variation in community composition (β‐diversity) and assembly mechanisms. However, quantitative syntheses of these patterns and processes across studies are lacking. Using null‐models and meta‐analyses of 22 factorial experiments in herbaceous plant communities across Europe and North America, we show that disturbance diversifies communities when dispersal is limited, but homogenises communities when combined with increased immigration from the species pool. In contrast to the hypothesis that disturbance and dispersal mediate the strength of niche assembly, both processes altered β‐diversity through neutral‐sampling effects on numbers of individuals and species in communities. Our synthesis suggests that stochastic effects of disturbance and dispersal on community assembly play an important, but underappreciated, role in mediating biotic homogenisation and biodiversity responses to environmental change.     

The role of synchronized swimming as affiliative and anti-predatory behavior in long-finned pilot whales

Synchronized swimming in cetaceans has been hypothesized to play a role in affiliative processes as well as anti-predatory responses. We compared observed variation in synchronized swimming at two research sites in relation to disturbance exposure to test these two hypotheses. This study describes and quantifies pair synchronization in long-finned pilot whales at the Strait of Gibraltar, Spain and Cape Breton, Canada. Synchronization differed depending on the behavioral state and the response is different in the two sites leading to the conclusion that environment can shape the occurrence and magnitude of certain behaviors. We also analyzed intra-population variations in synchronization among 4 social units of Pilot whales in the Strait of Gibraltar and the results of this study confirmed the affiliative role of synchronization and highlighted an influence of disturbance on synchronization. We can conclude that synchronization is a common behavior in long-finned pilot whales that allow for close proximity and rapid coordinated response of individuals, with the multiple functions of showing affiliation and reacting to disturbance.     

森林干扰生态研究

陆地上80％的生态系统都已受到了来自人类和自然的各种干扰,森林生态系统也不例外．在各种干扰作用下,尤其是人类不合理的干扰导致世界范围内的森林退化／衰退已成为一个十分严峻的事实,因此,以维持、恢复森林生态系统固有的多种功能为基础,实现高效、稳定、可持续就成为经营森林生态系统的总目标．随着干扰的加剧,近年来生态学界更加关注的是“受干扰”生态系统的研究．干扰对森林生态系统主要生态过程的影响以及森林生态系统对干扰的响应等问题,已成为森林生态研究领域的国际前沿与热点．因此,系统地研究干扰条件下森林生态系统的生态过程,并在此基础上确立干扰森林的经营理论与技术,对中国天然林资源保护等林业工程实施及国家生态安全建设具有重要的科学和现实意义．本文在广泛收集国内外有关森林干扰研究结果的基础上,总结了森林干扰的基本概念,分析了干扰与森林经营的关系,探讨了森林干扰研究领域所涉及的内容和关注的基础问题,提出了森林干扰生态研究的主要内容与方向,对今后干扰森林生态研究和中国天然林保护等林业工程建设具有参考价值．     

Nicotinamide coenzyme levels and activity of enzymes of their biosynthesis and degradation in animal tissues after exposure to extreme conditions and pathogenic factors

Studies of enzymic systems of biosynthesis and decay of nicotinamide coenzymes under the effect of extremal and pathogenic factors have shown that the activation of enzymes of the nucleosidase cleavage of coenzymes is the most essential link in the mechanism of concentration disturbance of metabolically active vitamin PP forms under cooling and development of inflammatory processes in the myocardium and liver. Inhibition of the enzymic activity in the biosynthesis of coenzymes under allergic myocarditis and hepatitis may play a definite role in the mechanism of disturbance of the coenzymic function of vitamin PP.     

The resilience and functional role of moss in boreal and arctic ecosystems

CONTENTS: Summary 49 I. Mosses in the northern, high-latitude region 50 II. The role of moss in ecological resilience 51 III. Response of moss to disturbance 54 IV. Future research needs 60 V. Conclusions 62 Acknowledgements 62 References 62 SUMMARY: Mosses in northern ecosystems are ubiquitous components of plant communities, and strongly influence nutrient, carbon and water cycling. We use literature review, synthesis and model simulations to explore the role of mosses in ecological stability and resilience. Moss community responses to disturbance showed all possible responses (increases, decreases, no change) within most disturbance categories. Simulations from two process-based models suggest that northern ecosystems would need to experience extreme perturbation before mosses were eliminated. But simulations with two other models suggest that loss of moss will reduce soil carbon accumulation primarily by influencing decomposition rates and soil nitrogen availability. It seems clear that mosses need to be incorporated into models as one or more plant functional types, but more empirical work is needed to determine how to best aggregate species. We highlight several issues that have not been adequately explored in moss communities, such as functional redundancy and singularity, relationships between response and effect traits, and parameter vs conceptual uncertainty in models. Mosses play an important role in several ecosystem processes that play out over centuries - permafrost formation and thaw, peat accumulation, development of microtopography - and there is a need for studies that increase our understanding of slow, long-term dynamical processes.     

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

Although recent work has shown that both deterministic and stochastic processes are important in structuring microbial communities, the factors that affect the relative contributions of niche and neutral processes are poorly understood. The macrobiological literature indicates that ecological disturbances can influence assembly processes. Thus, we sampled bacterial communities at 4 and 16 weeks following a wildfire and used null deviation analysis to examine the role that time since disturbance has in community assembly. Fire dramatically altered bacterial community structure and diversity as well as soil chemistry for both time-points. Community structure shifted between 4 and 16 weeks for both burned and unburned communities. Community assembly in burned sites 4 weeks after fire was significantly more stochastic than in unburned sites. After 16 weeks, however, burned communities were significantly less stochastic than unburned communities. Thus, we propose a three-phase model featuring shifts in the relative importance of niche and neutral processes as a function of time since disturbance. Because neutral processes are characterized by a decoupling between environmental parameters and community structure, we hypothesize that a better understanding of community assembly may be important in determining where and when detailed studies of community composition are valuable for predicting ecosystem function.     

Quantifying the relative importance of natural variables,human disturbance and spatial processes in ecological status indicators of boreal lakes

Spatial processes are increasingly associated with species distributions in freshwaters. However, these processes are usually neglected in bioassessment techniques, which may introduce uncontrolled variation in ecological indicators used to express human disturbance. We used partial linear regression to quantify the relative importance of natural variables, human disturbance and spatial variables in structuring variation in boreal lake status indicators based on six biological indicator groups (phytoplankton, macrophytes, diatoms, littoral and profundal macroinvertebrates and fish). We found that, of the pure fractions, human disturbance explained most variation (7–32%) of the ecological quality ratios (EQRs) for all groups, with the exception of littoral macroinvertebrate metric, which was most controlled by natural and spatial variables (15% and 16%, respectively). In addition, pure fractions of natural and spatial variables and joint fractions of different explanatory variable groups structured all biological metrics to various degrees. Phytoplankton, diatom and profundal macroinvertebrate EQRs responded purest to human disturbance but only weakly to pure natural or spatial variation. Our work demonstrates that spatial processes and spatial structuring of the environment can bias bioassessment techniques and hinder the detection of human impact. Thus, it is important to acknowledge spatial autocorrelation, context of metacommunity dynamics, species dispersal traits and variable spatial extent when defining reference conditions and bioassessment techniques for different biological groups. More research is needed to better understand the relative role of spatial processes on ecological metrics originated from different freshwater ecosystems. To this end, our work provides an example of how sources of variation can be identified to increase accuracy in freshwater bioassessment.     

Deterministic control on community assembly peaks at intermediate levels of disturbance

Despite long-standing research, the processes that drive community assembly remain poorly understood. We censused macroinvertebrate communities and measured flood disturbance in 17 Scandinavian mountain streams to assess the hypothesis that communities are shaped by stochastic processes under stable conditions, and increasingly by deterministic processes as disturbance becomes more severe. Each study stream was categorized as being stable (n=5), intermediate (n=7), or disturbed (n=5) depending on the severity of scouring floods. Following spring floods, the number of potential colonisers decreased with increasing disturbance, suggesting that disturbance filtered out species unable to cope with the stress involved. Communities at stable sites had the highest beta diversity, indicating that stochastic processes of community assembly were most important under the least disturbed conditions. In partial contrast with our predictions, the lowest beta diversity occurred between intermediate (not disturbed) sites, suggesting that increasing disturbance first enhances determinism but then rekindles stochasticity at severity levels beyond intermediate. Macroinvertebrate communities were shaped by deterministic processes, which recruit potential regional colonists depending on niche differences and disturbance conditions and by stochastic processes, which distribute the selected species randomly among individual localities. Although often considered opposing, stochastic and deterministic processes interact hierarchically, with relative strength modified by disturbance.     

A possible molecular mechanism of the impairment of the stability of the genome in cells capable of replicating DNA in acute and chronic forms of radiation sickness

On the basis of the experimentally grounded concept concerning the functional antagonism of various domains of chromosomal SSB-proteins, that play a major role in the implementation of the contrary processes which either provide stability of DNA macromolecules or bear the responsibility for their degradation, a possible molecular mechanism of the disturbance of cell genome stability upon acute and chronic radiation sickness is discussed.     

Elements of disturbance that affect epiphyte vitality in a temperate rainforest: an experimental approach

Aims Epiphytes are an abundant and diverse component of many wet temperate forests and have significant roles in ecosystem processes. Little is known about the processes and rates of their death and decomposition when they fall from the canopy, which limits our understanding of their role in forest carbon sequestration and nutrient cycling. In the temperate rainforest of the Quinault River Valley, Washington State, our aim was to test hypotheses regarding four elements of disturbance that might contribute to their decline.     

Intermittent hypoxic loading: a model system to study the early stages of myocardial lesions

Authors applied the model system of intermittent hypoxic loading to study the development of early myocardial alterations. It was found that a primary role is played by the deficiency of high-energy phosphate synthesis and by the disturbance of energetic and transport processes. The change of Ca2+-control, activation of anaerobic glycolysis and intracellular acidosis were found to be instrumental in decreasing contractility, impairing membranes and finally in a diffuse destruction of myofilaments.     

Repeat disturbances have cumulative impacts on stream communities

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Some implications of paleoecology for contemporary ecology

The paleoecological record allows contemporary ecologists to put current phenomena into the context of a longer time-frame, thereby providing the opportunity to evaluate the importance of slowly operating processes, past cyclic or unusual events, disturbance regimes, and historically constrained phenomena. We briefly outline the environmental history of the Quaternary, discuss the spatial and temporal resolution of the paleoecological evidence for biotic change, and summarize data relevant to such current issues as the nature of the biotic community, the role of disturbance, stability versus rapid change, evolutionary theory, explanations of species diversity, and refugia theory. Finally, we offer examples of the utility of paleoecological techniques for ecologists and environmental scientists.     

Plant functional traits capture species richness variations along a flooding gradient

Local species coexistence is the outcome of abiotic and biotic filtering processes which sort species according to their trait values. However, the capacity of trait‐based approaches to predict the variation in realized species richness remains to be investigated. In this study, we asked whether a limited number of plant functional traits, related to the leaf‐height‐seed strategy scheme and averaged at the community level, is able to predict the variation in species richness over a flooding disturbance gradient. We further investigated how these mean community traits are able to quantify the strength of abiotic and biotic processes involved in the disturbance–productivity–diversity relationship. We thus tested the proposal that the deviation between the fundamental species richness, assessed from ecological niche‐based models, and realized species richness, i.e. field‐observed richness, is controlled by species interactions. Flooding regime was determined using a detailed hydrological model. A precise vegetation sampling was performed across 222 quadrats located throughout the flooding gradient. Three core functional traits were considered: specific leaf area (SLA), plant height and seed mass. Species richness showed a hump‐shaped response to disturbance and productivity, but was better predicted by only two mean community traits: SLA and height. On the one hand, community SLA that increased with flooding, controlled the disturbance‐diversity relationship through habitat filtering. On the other hand, species interactions, the strength of which was captured by community height values, played a strong consistent role throughout the disturbance gradient by reducing the local species richness. Our study highlights that a limited number of simple, quantitative, easily measurable functional traits can capture the variation in plant species richness at a local scale and provides a promising quantification of key community assembly mechanisms.     

Functional diversity: a tool for answering challenging ecological questions

Functional trait diversity provides a powerful means of addressing ecology's persistent questions, through its dual role as an indicator of mechanisms driving differences in species composition between communities and as a predictor of ecosystem‐level processes. Functional traits provide a means of testing mechanisms behind species turnover between communities because environmental heterogeneity, competition and disturbance influence species fitness via their traits. Functional traits also provide a link between species and multiple ecosystem‐level processes, such as primary productivity, nutrient fluxes and resilience, since species influence these processes via their traits. This special issue demonstrates that functional diversity offers a practical means of investigating ecology's persistent questions.     

Observation of Trends in Biomass Loss as a Result of Disturbance in the Conterminous U.S.: 1986–2004

The critical role of forests in the global carbon cycle is well known, but significant uncertainties remain about the specific role of disturbance, in part because of the challenge of incorporating spatial and temporal detail in the characterization of disturbance processes. In this study, we link forest inventory data to remote sensing data to derive estimates of pre- and post-disturbance biomass, and then use near-annual remote sensing observations of forest disturbance to characterize biomass loss associated with disturbance across the conterminous U.S. between 1986 and 2004. Nationally, year-to-year variability in the amount of live aboveground carbon lost as a result of disturbance ranged from a low of 61 T _g C (±16) in 1991 to a high of 84 T _g C (±33) in 2003. Eastern and western forest strata were relatively balanced in terms of their proportional contribution to national-level trends, despite eastern forests having more than twice the area of western forests. In the eastern forest stratum, annual biomass loss tracked closely with the area of disturbance, whereas in the western forest stratum, annual biomass loss showed more year-to-year variability that did not directly correspond to the area of disturbance, suggesting that the biomass density of forests affected by disturbance in the west was more spatially and temporally variable. Eastern and western forest strata exhibited somewhat opposing trends in biomass loss, potentially corresponding to the implementation of the Northwest Forest Plan in the mid 1990s that resulted in a shift of timber harvesting from public lands in the northwest to private lands in the south. Overall, these observations document modest increases in disturbance rates and associated carbon consequences over the 18-year period. These changes are likely not significant enough to weaken a growing forest carbon sink in the conterminous U.S. based largely on increased forest growth rates and biomass densities.     

Spatial scale and sampling resolution affect measures of gap disturbance in a lowland tropical forest: implications for understanding forest regeneration and carbon storage

Treefall gaps play an important role in tropical forest dynamics and in determining above-ground biomass (AGB). However, our understanding of gap disturbance regimes is largely based either on surveys of forest plots that are small relative to spatial variation in gap disturbance, or on satellite imagery, which cannot accurately detect small gaps. We used high-resolution light detection and ranging data from a 1500 ha forest in Panama to: (i) determine how gap disturbance parameters are influenced by study area size, and the criteria used to define gaps; and (ii) to evaluate how accurately previous ground-based canopy height sampling can determine the size and location of gaps. We found that plot-scale disturbance parameters frequently differed significantly from those measured at the landscape-level, and that canopy height thresholds used to define gaps strongly influenced the gap-size distribution, an important metric influencing AGB. Furthermore, simulated ground surveys of canopy height frequently misrepresented the true location of gaps, which may affect conclusions about how relatively small canopy gaps affect successional processes and contribute to the maintenance of diversity. Across site comparisons need to consider how gap definition, scale and spatial resolution affect characterizations of gap disturbance, and its inferred importance for carbon storage and community composition.     

Disturbance,coral reef communities,and changing ecological paradigms

We examine changing ecological theory regarding the role of disturbance in natural communities and relate past and emerging paradigms to coral reefs. We explore the elements of this theory, including patterns (diversity, distribution, and abundance) and processes (competition, succession, and disturbance), using currently evolving notions concerning matters of scale (temporal and spatial), local versus regional species richness, and the equilibrium versus nonequilibrium controversy. We conclude that any attempt to categorize coral reef communities with respect to disturbance regimes will depend on the question being asked and the desired level of resolution: local assemblage versus regional species pool, successional versus geological time, and on the taxonomic and tropic affinities of species included in the study. As with many communities in nature, coral reefs will prove to be mosaics of species assemblages with equilibrial and nonequilibrial dynamics.