Diversity of mesophilic clostridia in Costa Rican soils

Costa Rica is located in the Tropic, one of the most biologically diverse regions of the world; its soil is an important epicenter of biodiversity and Clostridium spp. are among the most frequent bacteria. The diversity of clostridia in Costa Rican soils and its possible association with geographic zone, pH or type of soil was studied in 117 soil samples: 18 from the Atlantic Zone, 30 from the Central Plateau, 30 from the Dry Pacific, 13 from the North Zone, and 26 from the South Pacific. The pH and the mesophilic clostridia species were determined for each sample. For bacterial isolation, a selective methodology for spores and pre-reduced anaerobically sterilized media were used. A total of 1945 strains of clostridia were isolated, 98% were identified and corresponded to 54 species; the most frequent species were C. subterminale (56%), C. oceanicum (51%), C. bifermentans and C. glycolicum (50%, each), C. sporogenes (49%), and C. sordellii (42%). An average of 7.1 species per sample was obtained; the Atlantic Zone showed the greatest diversity: 8.6 species per sample and a total of 45 species. Except for C. chauvoei, all described toxigenic clostridia species were isolated; C. sordellii (42%) and C. perfringens (38%) were the most frequent. No statistical relation could be established between geographic zone or type of soil and any species, showing that clostridia had a high adaptation capability to grow in different soil conditions; only some clostridia were isolated from very acidic samples while others from soils with a wide range of pH. In general, a uniform distribution of most species and a high variety of clostridia in Costa Rican soils were observed, in agreement with the high biodiversity described for other living beings in this country.     

Resting environments of some Costa Rican mosquitoes

The resting sites of tropical American mosquitoes are poorly documented, and the few reports that do exist are largely from opportunistic collections. Since blood‐engorged females (used in determining host associations) are more efficiently collected from resting sites than attractive traps, information on resting site utilization has practical value. To investigate differences in the resting sites utilized by tropical mosquitoes, we collected and identified female mosquitoes from one man‐made (resting shelter) and three natural (buttress tree roots, hollow trees, and understory vegetation) resting environments at a tropical dry forest location in western Costa Rica. All of the most common species collected demonstrated associations with one or more resting environments. Females of five species (blood‐engorged Anopheles albimanus, Uranotaenia apicalis, Uranotaenia lowii, Uranotaenia orthodoxa, and blood‐engorged Mansonia titillans) were collected in significantly greater numbers from understory vegetation than other resting environments. Culex erraticus and other members of the subgenus Melanoconion were encountered more often in resting shelters, hollow trees, and buttress roots, while Culex restrictor (blood‐engorged) females were associated with hollow trees. Similarity indices indicate that buttress tree roots, hollow trees, and resting shelters are similar with respect to the mosquito communities that utilize them as resting sites, while understory vegetation has a resting fauna that is different than the other environments surveyed here. These results add to the body of information regarding resting sites utilized by tropical American mosquitoes.     

Growth of Mantled Howler Groups in a Regenerating Costa Rican Dry Forest

We examined population dynamics in mantled howlers (Alouatta palliata palliata) in a regenerating tropical dry forest in Santa Rosa National Park (SRNP), Costa Rica. The population has grown at a rate of about 7% per annum during the past decade. The growth in numbers from 342 in 1984 to 554 in 1992 reflects an increase in the number of groups (from 25 to 34) and a slight increase in their average size (from 13.6 to 16.3). Population density has increased from 4.9 to 7.9 individuals per km ². Santa Rosa's population density and group compositions are similar to those at several other mantled howler sites, but densities of mantled howlers are much higher at two other well-studied sites: La Pacifica and Barro Colorado Island (BCI). We relate the low density of howlers at Santa Rosa to local historical and ecological factors. Howler populations at high and low densities differ in average group size and sex ratio. At high population densities, groups are larger and include more adult females. The number of male howlers per group appears to be more strictly limited and less variable than the number of females is. However, there is greater variation in male group membership at Santa Rosa than at La Pacifica or BCI, and at Santa Rosa there are more generating forests available into which males and females can disperse and form new groups. We present case studies describing two ways in which new howler groups are formed, and we suggest that, compared to females and compared to males at high density sites, males are relatively advantaged in the uncrowded habitats at Santa Rosa and other low density sites.     

Microclimatic parameters influencing nitrogen fixation in the phyllosphere in a Costa Rican premontane rain forest

The acetylene reduction method was used to measure nitrogen fixation in the phyllosphere of attached leaves of different phorophytes under natural conditions in a premontane rain forest in Costa Rica. Maximum rates of nitrogen fixation (26 ng N · cm⁻² leaf area · h⁻¹) – mainly due to the activity of two species of Scytonema (Cyanobacteria) – were measured in the rainy season in bright sunlight. Rates of nitrogen fixation were correlated with the leaf area covered by Scytonema. In periods without precipitation the fixation activity decreased to zero within 2–3 days. As long as the epiphylls were sufficiently supplied with water, other microclimatic factors like temperature and light intensity also influenced nitrogen fixation rates, but to a lesser extent. Relative humidity and species of phorophyte showed no direct influence. It was concluded that the most important factor for nitrogen fixation in the phyllosphere was the availability of liquid water. Linking these results to meteorological data, the input of nitrogen by biological nitrogen fixation in the phyllosphere in the investigation area was estimated to be as much as 1.6 ± 0.8 kg N · ha⁻¹ · year⁻¹ per unit of leaf area index (LAI). For an LAI of 2 for the understory the nitrogen input would vary between 2 and 5 kg N · ha⁻¹ · year⁻¹. This work also demonstrates the importance of detailed knowledge of variation in microclimate throughout the year as a basis for extrapolation of the annual nitrogen input. Received: 21 December 1997 / Accepted: 14 June 1998     

Spiroplasma species in the Costa Rican highlands: implications for biogeography and biodiversity

More than 1,000 Spiroplasma isolates have been obtained from horse flies and deer flies (Diptera:Tabanidae) in the United States and Canada. However, the spiroplasma biota of Central America is poorly known. In August of 1995 and 1998, 13 isolates were obtained in 14 attempts from horse flies of a single species, Poeciloderas quadripunctatus, taken in the Costa Rican highlands (1,100–2,000 m). The majority of the “isolates” proved to be mixtures of two or more Spiroplasma species, but after filter cloning, single strains emerged that were designated as representatives of the 13 accessions. Six distinct spiroplasma serogroups were identified from these isolations. Three of the strains are putative new species with no serological relationship to any other Spiroplasma species. A fourth strain is a putative new species that may be distantly related to S. helicoides, a southeastern U.S. species. These four strains are accorded herein status as representatives of new serogroups: strain BARC 4886 (group XXXV); strain BARC 4900 (group XXXVI); strain BARC 4908 (group XXXVII); and GSU5450 (group XXXVIII). A fifth Spiroplasma species was very closely related to S. lineolae, known previously only from the Georgia (U.S.) coast. The sixth was most closely related to subgroup VIII-3, known from Texas and the southeastern U.S. Discovery of six spiroplasma species in only 13 attempted isolations reflects diversity seldom equaled in southeast Georgia, and never elsewhere in the U.S. These results are consistent with a hypothesis that spiroplasma diversity increases from north (Nova Scotia) to south (Georgia and Costa Rica). The discovery of significant affinity between some spiroplasmas of the southeastern U.S. and the Costa Rican highlands was unexpected, but may reflect a climatically complex Pleistocene history.

Widow and widower remarriage: an analysis in a rural 19th century Costa Rican population and a cross-cultural discussion

Although the topic of remarriage features saliently in the cultural anthropological literature, it is virtually absent in the biological anthropology journals. This is perplexing, given that remarriage affects the differential reproductive success of males and females in a community, and could well impact a community's population structure. In this paper, we research remarriage practices in a rural 19th century community in Costa Rica. Although we find support for the proposition that males are more likely to remarry than females, we find that widows who remarry are not all young and able to reproduce. Our findings support the cross-culturally-generated suggestion that a female's ability not to remarry is tied to her to ability to own property. Remarriage is a topic of interest to biological anthropologists from a cross-cultural and biocultural perspective.     

Morphological and Molecular Evidence of Arbuscular Mycorrhizal Fungal Associations in Costa Rican Epiphytic Bromeliads1

Arbuscular mycorrhizal fungi influence the growth, morphology, and fitness of a variety of plant species, but little is known of the arbuscular mycorrhizal (AM) fungal associations of plant species in forest canopies. Plant species' associations with AM fungi are most often elucidated by examining the roots for fungal structures; however, morphological data may provide a limited resolution on a plant's mycorrhizal status. We combined a traditional staining technique with a molecular marker (the 18S ribosomal gene) to determine whether or not a variety of epiphytic bromeliads form arbuscular mycorrhizal fungal associations. Using these methods we show that the epiphytic bromeliad Vriesea werkleana forms arbuscular mycorrhizal fungal associations with members of the genus Glomus. AM fungal sequences of this plant species formed three distinct clades nested within a larger Glomus clade; two of the clades did not group with any previously sequenced lineage of Glomus. Novel clades may represent novel species. Although Vriesea werkleana is associated with multiple AM fungal species, each individual plant is colonized by a single lineage. The combination of morphological and molecular methods provides a practical approach to the characterization of the mycorrhizal status of epiphytic bromeliads, and perhaps other tropical epiphytes.     

Toward an Integrated Understanding of Pesticide Use Intensity in Costa Rican Vegetable Farming

Understanding the factors that influence the adoption of synthetic pesticides has to date overshadowed explanations of variation in pesticide intensity. I conducted a survey of vegetable farmers in Northern Cartago and the Ujarrás Valley, Costa Rica, in 2003–2004 with the goal of explaining differences in pesticide intensity with reference to socioeconomic, political economic, and agroecological characteristics and relationships. Using ordinary least squares regression models, this paper explores the factors that influence pesticide use intensity in potato and squash production. Results indicate that many variables strongly influence pesticide intensity, including variables related to the farmer, farm household, political-economic relationships, the biophysical environment, and agroecological relationships. Conclusions discuss the need for an integrated approach to adequately understand pesticide intensity and potential policy interventions including agroecological education and extension, increased enforcement of pesticide residue limits in the national market, and land reform to allow for longer fallow periods.

The classification, evolution and biology of the Costa Rican species of Cryptophion (Hymenoptera: Ichneumonidae)

The six known Costa Rican species of the campoplegine ichneumonid genus Cryptophion Viereck are described and keyed. The distribution of species throughout Costa Rica is detailed based on data gathered by an intensive Malaise trap survey of the ichneumonids of the country. Five new species are recognized: C. espinozai. C. guillermoi, C. manueli. C. moragai and C. tickelli , and a sixth, C. inaequalipes (Cresson) redescribed. The monophyly of the genus is demonstrated and the phylogeny of the Costa Rican species reconstructed. Host relationships have been established for all species in Costa Rica; they develop as koinobiont endoparasitoids of first to third instar larvae of Sphingidae or Saturniidae. Analysis of the host relationships from a phylogenetic perspective suggested that the genus first evolved using macroglossine sphingid larvae feeding on rubiaceous understorey plants as hosts, and subsequently diversified to utilize sphingine sphingids and ceratocampine saturniids feeding on a variety of food-plants. Most species appear to be monophagous and oligophagy is apparently a derived feature of one sister-species pair, C. espinozai and C. manueli . In Santa Rosa National Park, Costa Rica, only a small proportion of the species of Saturniidae and Sphingidae present are used as hosts by Cryptophion species. No one host species is parasitized by more than one Cryptophion species. No species of Cryptophion is known to parasitize more than one host species feeding on any one plant species. The monophagous species C. inaequalipes is only known to develop in its sphingid host when that host is feeding on one of its two alternative food-plants.     

Early Successional Patterns and Potential Facilitation of Woody Plant Colonization by Rotting Logs in Premontane Costa Rican Pastures

We examined the size, species, location (x and y coordinates), and microsite inhabited by colonizing trees and shrubs in five abandoned pastures in southern Costa Rica. All woody stems greater than 1 m tall in the pastures were measured and mapped, from the overhanging forest edge to 50 m into the abandoned pasture. Species composition of colonists differed substantially among pastures: Croton draco (Euphorbiaceae) dominated one site, two species of Miconia (Melastomataceae) another site, and Verbesina tapentiensis (Asteraceae) a third site. Site 4 had the highest cover of rotting logs (11%), and a four‐fold greater density of colonizing woody plants than the site with the next highest colonist density. For all species pooled, and for several individual taxa, density was positively correlated across sites with abundance of log microsites. Four of the six most common woody species in site 4 occurred on logs significantly more often than expected had they been randomly distributed relative to logs. Site 5 had less abundance of logs, but the common Miconia species was again significantly more likely to be found on log microsites. These results strongly suggest that rotting wood microsites facilitate establishment of bird‐dispersed pioneer trees, which in turn could foster regrowth of other forest species.     

Diversity of Helicobacter pylori cagA and vacA genes in Costa Rica: its relationship with atrophic gastritis and gastric cancer

BACKGROUND: Associations between Helicobacter pylori gene diversity and gastric cancer have not been reported on in Costa Rica, despite its being one of the countries with the highest gastric cancer incidence and mortality rates in the world. The aim of this study was to determine the prevalence of H. pylori cagA and vacA genes and investigate whether it could be correlated with atrophic gastritis (AG) and gastric cancer (GC) in Costa Rica. MATERIALS AND METHODS: Genomic DNAs from isolates of 104 patients classified into two groups: non-atrophic gastritis group (n = 68) and atrophic gastritis group (n = 36), were subjected to PCR-based genotyping of cagA and vacA genes and their correlation with clinical outcome was investigated. Total DNA extractions from gastric tissues of 25 H. pylori-infected gastric cancer patients were utilized for comparative purposes. RESULTS: The presence of cagA (75.3%), vacA s1b (75.3%), and vacA m1 (74.2%) was detected, and colonization by strains with different vacA genotypes in the same stomach was found in 9.7% of the patients. Age- and sex-adjusted vacA s1b and vacA m1 were associated with GC while only vacA m1 was significantly associated with AG. A tendency for association between cagA and vacA s1b, and AG was reported. CONCLUSIONS: The prevalence status of the cagA and vacA (s1/m1) genes in Costa Rica seems to fall between that found in European/North American and East Asian countries, and both cagA and vacA seem to have clinical relevance in this country.     

Environmental control of flowering periodicity in Costa Rican and Mexican tropical dry forests

Aim We analyse the proximate causes of the large variation in flowering periodicity among four tropical dry forests (TDF) and ask whether climatic periodicity or biotic interactions are the ultimate causes of flowering periodicity. Location The four TDFs in Guanacaste (Costa Rica), Yucatan, Jalisco and Sonora (Mexico) are characterized by a 5–7 month long dry season and are located along a gradient of increasing latitude (10–30°N). Methods To dissect the differences in flowering periodicity observed at the community level, individual tree species were assigned to ‘flowering types’, i.e. groups of species with characteristic flowering periods determined by similar combinations of environmental flowering cues and vegetative phenology. Results Large variation in the fraction of species and flowering types blooming during the dry and wet season, respectively, indicates large differences in the severity of seasonal drought among the four forests. In the dry upland forests of Jalisco, flowering of leafless trees remains suppressed during severe seasonal drought and is triggered by the first rains of the wet season. In the other forests, leaf shedding, exceptional rainfall or increasing daylength cause flowering of many deciduous species at various times during the dry season, well before the summer rains. The fraction of deciduous species leafing out during the summer rains and flowering when leafless during the dry season is largest in the Sonoran TDF. Main conclusions In many wide‐ranging species the phenotypic plasticity of flowering periodicity is large. The distinct temporal separation of spring flowering on leafless shoots and subsequent summer flushing represents a unique adaptation of tree development to climates with a relatively short rainy season and a long dry season. Seasonal variation in rainfall and soil water availability apparently constitutes not only the proximate, but also the ultimate cause of flowering periodicity, which is unlikely to have evolved in response to biotic adaptive pressures.     

Changes in diversity along a successional gradient in a Costa Rican upper montane Quercus forest

Changes in terrestrial vascular plant diversity along a successional gradient were studied in a Costa Rican upper montane Quercus forest. In 1991 and 1992 species presence and cover were recorded in 12 successional 0.1 ha forest plots. A total of 176 species in 122 genera and 75 families were found. Asteraceae was the most speciose family. With the help of TWINSPAN three successional phases were classified: (i) Early Secondary Forest (ESF, 145 spp.), (ii) Late Secondary Forest (LSF, 130 spp.) and (iii) Primary Forest (PF, 96 spp.). Detrended Correspondence Analysis (DCA) species ordination using DECORANA illustrates that different ecological species groups can be distinguished along the time sequence. Alpha diversity (Shannon-Wiener index, among others) in ESF and LSF was significantly greater than in PF. This is probably explained by downslope migration of numerous sub(alpine) species to cleared and recently abandoned montane sites. Beta diversity applying Sørensen's similarity coefficients declined during succession. Using linear regression, the minimum time required for floristic recovery following disturbance and abandonment was calculated at 65.9 years. A comparison with other studies shows that secondary forests in upper montane Costa Rica can be as diverse as in neotropical lowlands.     

Studies in Neotropical paleobotany. XII. A palynoflorafrom the Pliocene Rio Banano Formation of Costa Rica and the Neogenevegetation of Mesoamerica

An assemblage of 17 identified and four unknown pollen and sporetypes is reported from the Pliocene Rio Banano Formation of southeasternCosta Rica. The most abundant are monolete fern spores, Palmae, cf.Antrophyum, Symphonia, Pelliceria,Lacmella (previously unreported in the fossil record),Alchornea, and Sabicea. These arrange into twopaleocommunities-mangroves and lowland tropical rain forest. Annual precipitation is estimated at near the present ～3500 mm, butless seasonal, and the MAT (mean annual temperature) at ～27°C. No pollen taxa representing distinctly arid or high-altitude vegetationwas being blown or washed into the coastal depositional basin, and nopollen grains were recovered of northern temperate elements that arepresent in Neogene floras to the north in Guatemala and southeasternMexico. These data are consistent with those from 12 other Miocene andPliocene palynofloras from northern Latin America, indicating the lateappearance of dry habitats and moderate paleoelevations and aprogressive southward introduction of northern temperate elements withlate Cenozoic cooling.     

Illegal Palm Heart (<Emphasis Type="Italic">Geonoma edulis</Emphasis>) Harvest in Costa Rican National Parks: Patterns of Consumption and Extraction

Illegal Palm Heart (Geonoma edulis) Harvest in Costa Rican National Parks: Patterns of Consumption and Extraction. Illegal extraction of non-timber forest products in the tropics is widespread, and many protected areas face the challenge of balancing conservation needs with cultural practices related to the use and extraction of animals and plants. We studied the illegal wild palm heart extraction of Geonoma edulis, locally known as súrtuba, in Volcán Poás and Braulio Carrillo National Parks in Costa Rica. Through 96 questionnaires administered in three communities bordering these national parks, and by semistructured interviews with poachers and park managers, this study examined extraction and consumption motives, patterns, and frequencies. This palm is sought out by the communities for use during Holy Week to satisfy cultural traditions, for its associated nutritive value, and because of its unique bitter flavor, not comparable to domesticated palm heart. Whereas the majority of the respondents consume it during Holy Week (55.2%), a substantial number (27.1%) consume G. edulis palm heart at least once a month. The majority extract once a year (58%); however, a minority (2.1%) rely on G. edulis for economic subsistence. This accounts for 72.6% of the reported extraction (over 4,500 palms per year) and is supplying a year-round market for nontraditional use. Our results show that what most likely began as a cultural tradition has become an uncontrolled, nontraditional source of income. Additional efforts should determine the feasibility of limited extraction outside protected areas to satisfy traditional use. Such an effort entails the decentralization of biodiversity policies and innovative methods to implement protective measures, as well as incentives for community involvement in the management of this palm heart species.     

The East Indian Diaspora in Costa Rica: Inbreeding Avoidance, Marriage Patterns, and Cultural Survival

Anthropologists have long been interested in the survival of Indian cultural traits in the New World. In this article, we present results of an ongoing project with a Costa Rican community that descends from East Indian indentured servants. We focus on the group's marriage patterns and how these patterns might have helped keep the community as a cohesive ethnic group. We investigate the group's level of inbreeding by computing the inbreeding coefficient using two different methods. We show that the community has been successful at keeping its inbreeding low, despite its small size, by allowing marriage with nonmembers of the community. We propose that unless consanguineous marriages are allowed virtually all of the community's marriages will be with noncommunity members. Absorption into tourism, as well as the community's staunch avoidance of consanguineous marriages and virtually universal marriage with noncommunity members, will likely contribute to their disappearance as a viable ethnic group.     

A taxonomic revision of Encyclia (Orchidaceae: Laeliinae) in Costa Rica

A taxonomic revision of Encyclia (Orchidaceae) in Costa Rica is presented. The taxonomic history of the genus and its phylogenetic position are discussed. Characters of vegetative and floral morphology are described and their taxonomic significance is discussed. The genus is treated as comprising nine species in the country and a key to species is provided. Each taxon is described on the basis of Costa Rican material, illustrated in a composite plate, and its distribution within the country is assessed. Distribution maps for all the taxa are given. Overall distribution, derivation of name, synonymy, notes on species ecology and diagnostic features are presented for each taxon. The names Encyclia tonduziana and Epidendrum mooreanum are typified. © 2012 The Linnean Society of London, Botanical Journal of the Linnean Society, 2012, 168 , 395–448.     

Photosynthesis and successional status of Costa Rican rain forest trees

Seven tree species from three different light environments in the wet lowland forests of Costa Rica were grown under controlled environment conditions to assess light related photosynthetic potentials. Light saturated photosynthesis rates were clearly related to light levels of the field environments. Mean saturated, net photosynthetic rates ranged from 6.8 to 11.3 to 27.7 mol m^–2 sec^–1 for plants from heavy shade, canopy light gaps and man-made clearings respectively. Light saturation of plants from clearings occurred at photosynthetic photon flux densities greater than 1000 mol m^–2 sec^–1 whereas plants from heavy shade environments became light saturated near 500 mol m^–2 sec^–1. Plants that normally occur in intermediate light environments were intermediate in light saturation levels. Mean maximum stomatal conductances ranged from 1.0 to 7.3 mm sec^–1 and followed a pattern similar to photosynthetic rates.