X-ray structure of a mono(1-methylthyminato) complex of cisplatin,chloro-(1-methylthyminato-N3)-cis-diammineplatinum(II) monohydrate

The crystal structure of chloro-(1-methyltyminato- N3)-cis-diammineplatinum(II) monohydrate, cis- (NH₃)₂Pt(C₆H₇N₂O₂)Cl·H₂O, is reported. The compound crystallizes in space group P$\text{1}$ with a = 6.911(2) Å, b = 8.598(3) Å, c = 11.464(4) Å, α = 100.13(3)°, β = 120.03(3)°, γ = 93.16(3)°, Z = 2. The structure was refined to R = 0.048 and R_w = 0.057. The compound contains the deprotonated 1-methylthymine ligand coordinated to Pt through N3 (1.973(10) Å). This distance represents the shortest Pt-N3(pyrimidine-2.4-dione) bond reported so far. The two PtNH₃ bond lengths differ significantly: PtNH₃ (trans to Cl) is longer (2.052(10) Å) than PtNH₃ (trans to N3 of 1-MeT) (2.002(11) Å). The PtCl distance (2.326(3) Å) is normal, as is the large dihedral angle between the Pt coordination plane and the nucleobase (76.5°).     

Crystal structure of [chloro(diethyldithiocarbamato)butyl phenyl]tin(IV)

The crystal structure of the title compound, SnCl(C₆H₅)(C₄H₉)[S₂CN(C₂H₅)₂], was determined and refined to an R factor of 3.2% for 4876 reflections. The molecule contains five-coordinate tin in a distorted trigonal bipyramidal arrangement with the tin atom lying 0.20 Å below the equatorial plane formed by one of the sulphur atoms, S(1), and the donor carbons of the butyl and phenyl groups. The chlorine and the other sulphur atom, S(2), occupy axial sites, making a S(2)SnCl angle of 156.85(1)°. The SnS(2) bond is markedly elongated (2.764(1) Å) compared to the SnCl bond (2.449(1) Å) and the SnS(1) bond (2.454(1) Å). The structure resembles those of analogues such as (C₆H₅)₂Sn(glygly) in having both hydrocarbon ligands located in the equatorial plane. Crystal data: space group P$\text{1}$: a = 8.291(2) Å, b = 14.726(3) Å, c = 9.509(2) Å, α = 96.24(2)°, β = 107.02(3)°, γ = 116.70(2)°, Z = 2, R = 3.2% for 4876 independent reflections.     

Preparation,crystal structure and thermal behaviour of bischromatodihydroxobis-(pyridine)tricopper(II) [Cu3(CrO4)2(OH)2(C5H5N)2]

The title compound was prepared by slow crystallization from a hot aqueous solution of copper(II)- dichromate and pyridine. The structure determination was performed at room temperature on a single crystal in the triclinic space group P$\text{1}$, a = 5.378(1), b = 5.619(1), c = 13.569(2) Å, α = 93.32(1), β = 100.25(1), γ=98.45(1)°. Using 2026 reflections with F_o² > (F_o²) obtained on a CAD-4 single crystal diffractometer the structure was solved by conventional Patterson and Fourier methods and full matrix least-squares refinement to R = 0.047. The structure consists of complex chains built up from two different (4 + 2) distorted copper(II) octahedra sharing common edges. These chains are linked via OCrO bonds thus forming a two-dimensional infinite network. The pyridine rings extending into the space between these layers are disordered due to rotation around the CuN bond. In the course of the refinement two favoured positions with occupation probabilities 50:50 percent were found. During thermal decomposition the compound loses pyridine and water followed by a release of oxygen to yield poly- crystalline CuCr₂O₄ and CuO. An intermediate phase with empirical formula Cu₃O(CrO₄)₂ was detected by X-ray powder diffraction and its unit cell parameters were determined.     

Crystal structures of α- and β-(1,10-phenanthroline)tetrahydroborato(triphenylphosphine)copper(I) and (2,9-dimethyl-4,7-diphenyl-1,10-phenanthroline)tetrahydroboratocopper(I)

Copper(I) is five coordinate in (1,10-phenanthroline)tetrahydroborato(triphenylphosphine)copper(I). This compound crystallizes from either toluene as the yellow, α-form, a = 16.247(8), b = 9.750(7), c = 9.322(5) Å, α = 62.92(4), β = 84.77(4), γ = 84.34(5)°, triclinic P$\text{1}$, Z = 2, or from a xylene/methylene chloride mixture as the red β-form, X-ray cell, a = 13.675(11), b = 10.115(8), c = 9.700(7) Å, α = 95.22(6), β = 96.22(6), γ = 101.02(6)°; neutron cell, as the tetradeuteroborate, a = 13.703(1), b = 10.096(8), c = 9.74(1) Å, α = 95.23(9), β = 96.51(8), γ = 101.04(2)°, triclinic, P$\text{1}$, Z = 2. For both forms, unidentate triphenylphosphine, bidentate 1,10-phenanthroline and unsymmetrical bidentate BH₄^? completes the copper(I) coordination but there are subtle differences between the two. When the ligand 2,9-dimethyl-4,7-diphenyl-1,10-phenanthroline, dmdp, replaces 1,10-phenanthroline, the compound obtained is four coordinate with no tpp in the crystal. [C(dmdp)BH₄] is monoclinic, Cc, a = 14.522(4), b = 20.07(2), c = 7.718(2) Å, β = 106.17(2)°, Z = 4.     

Macrocyclic polyphosphane ligands: cobalt(II) and nickel(II) complexes of 1,10-dipropyl-4RS, 7SR, 13SR, 16RS-tetraphenyl-1,10-diaza-4,7,13,16-tetraphospha-cyclooctadecane and crystal structure of the cobalt tetraphenylborate monohydrate complex

The X-ray crystal structure of the title compound has been carried out. The crystals are triclinic, space group P$\text{1}$, a = 13.252(2), b = 13.943(2), c = 24.316(5) Å, α = 70.660(14), β = 75.219(14), γ = 69.231(13)° for Z = 2. The structure has been refined to an R factor of 0.069 by the least-squares technique. The cobalt atom is five-coordinated by the four phosphorus atoms of the macrocycle and by a water molecule forming a distorted square-pyramidal geometry. The stereochemistry of some cobalt(II) and nickel(II) complexes of the same ligand were investigated, in the solid state and in solution, by electronic spectroscopy.     

Cobalt(II) and nickel(II) complexes with nitrogen-sulfur tripod ligands. Crystal and molecular structure of the five-coordinate complex bromotris(2-tert-butylthioethyl)aminecobalt(II) hexafluorophosphate (NS3Br donor set)

The tripod ligands tris(2-alkylthioethyl)amine, with alkyl = ethyl, iso-propyl, and tert-butyl, give with cobalt(II) and nickel(II) halides high-spin complexes with formulae [MLX₂], [MLX]Y, and [MLX]₂[MX₄] (where X = Cl, Br, I; Y = BPh₄, PF₆). The nickel complexes are either six- or five-coordinate: the coordination number decreases as the bulkiness of the alkyl group bound to the sulfur is increased. All the cobalt complexes contain the five-coordinate cation [CoLX]⁺. The crystal and molecular structure of the [Co(NS₃-t-Bu)Br]PF₆ complex has been determined by standard X-ray methods, and refined to R = 0.061. The crystals are monoclinic, space group P2¹/n. The unit cell dimensions are: a = 27.420 (2), b = 11.923 (4), c = 17.082 (1) Å, β = 102.40 (1)°, Z = 8. The complex cation has a trigonal bipyramidal geometry with the nitrogen and bromine atoms at the apexes, and the three sulfur atoms in the equatorial plane. The tetrahedral distortion is relatively small (mean BrCoS angle = 98.5°), and similar to that found for the [Co (Me₆tren)Br]Br complex [Me₆tren = tris(2-dimethylaminoethyl)amine).     

Synthesis, spectroscopic and structural characterization of Cu(II) derivatives of tris(pyrazol-1-yl)methanes

The reaction between CuX₂ (X=ClO₄, NO₃, Cl, Br and CH₃COO) and excess of tris(pyrazol-1-yl)methane ligands L (L=CH(pz)₃, CH(4-Mepz)₃, CH(3,5-Me₂pz)₃, CH(3,4,5-Me₃pz)₃ or CH(3-Mepz)₂(5-Mepz)) yields [CuX₂(L)], [{CuX₂}₃(L₂)₂] or [Cu(L₂)]X₂-type complexes. The ligand to metal ratio is dependent on the number and disposition of the Me substituents on the azole-type ligand and mainly on the nature of the counter-ion X. All complexes have been characterized in the solid state as well as in solution (IR and UV spectra, and conductivity determinations). The solid-state structures of [Cu{(3,5-Me₂pz)₃CH}₂](NO₃)₂, [Cu{(3,5-Me₂pz)₃CH}₂](ClO₄)₂·0.5H₂O, [Cu{(3,4,5-Me₃pz)₃CH}₂](NO₃)₂·H₂O, [Cu{(4-Mepz)₃CH}₂]Br₂·3H₂O have been determined by single crystal X-ray studies.     

Preparation and structural characterization of di-μ-azido-bis[azido(2-aminopyridine)aquo]dicopper(II), [Cu(2-ampy)(N3)2(H2O)]2

Di-μ-azido-bis[azido(2-aminopyridine)aquo]dicopper(II), [Cu(2-ampy)(N₃)₂(H₂O)]₂, was synthesized and characterized by X-ray crystallography. The crystals are triclinic, space group P$\text{1}$, with a = 7.142(1), b = 7.812(1), c = 9.727(1) Å, a = 96.52(1), β = 95.52(1), γ = 113.47(1)°, and Z = 1. The structure was refined to R_F = 0.030 for 1960 observed MoKα diffractometer data. The dimeric molecule, which possesses a crystallographic inversion center, contains both terminal and μ(1)-bridging azido groups. Each copper(II) atom is further coordinated by a 2-aminopyridine ligand (via its ring N atom) and a water molecule to give a distorted square pyramid, with the metal atom raised by 0.17 Å above the N₄ basal plane [CuN (ring) = 2.001(2), CuN (azide) = 1.962(3)–2.018(2) Å] towards the apical aquo ligand [CuO = 2.371(2) Å]. Each water molecule forms an intramolecular O?HN (amine) acceptor hydrogen bond, and is linked by two OH?N (terminal azide) intermolecular donor hydrogen bonds to adjacent dimeric complexes to yield a layer structure parallel to (001). Infrared and electronic spectral data are presented and discussed.     

Spectroscopy and crystal structure of neodymium coordination compound with glycine: Nd2(Gly)6·(ClO4)6·9H2O

Neodymium complex compound with glycine: Nd₂(Gly)₆·(ClO₄₆·9H₂O was synthesized and obtained in the form of monocrystals. Absorption spectra recorded in the region of 8000–35 000 cm^-1 were measured along the crystallographic axes. Intensities of the f-f transitions were analysed on the basis of the Judd theory. The X-ray crystal structure determination of the complex is reported. Crystals are triclinic, space group P$\text{I}$, with a = 11.554(4) Å, b = 14.108(1) Å, c = 15.660(3) Å, α = 97.14(1)°, β = 102.82(2)°, γ = 105.28(1)°, V = 2355.25 ų Z = 2, M.W. = 1495.4, D_c = 2.129)(3) g cm^-3, D^m = 2.103(1) g cm^-3. The structure was solved by Patterson's method and successive Fourier syntheses giving the locations of all nonhydrogen atoms. The final R factor was 0.062 and R_w = 0.073 for 12869 reflections with |F_o| > 5σ|(F_o)|. The asymmetric unit consists of a dimeric formula unit. The coordination polyhedron of Nd atoms comprises seven oxygen atoms from glycine and two from water molecules. The neodymium-glycine bonding mode is compared with that of the calcium-glycine complex.     

Studies on the metal—amide bond. XVII. The crystal and molecular structure of the α-form of aqua[N,N′-bis(2′-pyridinecarboxamido)-1,3-propane] copper(II) dihydrate

α-Aqua[N,N′-bis(2′-pyridinecarboxamido)-1,3-propane]copper(II) dihydrate, C₁₅H₂₀N₄O₅Cu, is monoclinic, space group P2₁/c, with a = 11.719(2), b = 13.092(2), c = 12.663(2) Å, β = 119.56(1)°, Z = 4. The structure was refined to R = 0.026 for 2398 diffractometer data using full-matrix least-squares methods. The copper atom is five-coordinate with the N₄-tetradentate ligand encompassing the base of a distorted square-based pyramid which is appreciably distorted towards a trigonal bipyramid [average Cu-N(amide) 1.950(2), Cu-N(pyridine) 2.043(2) Å, N(amide)-Cu-N(amide) 94.5(1), N(pyridine)-Cu-N(pyridine) 100.2(1)°] and with the copper atom lying 0.27 Å above the N₄ plane towards the apical water molecule [Cu-O 2.236(2) Å]. The central six-membered chelate ring adopts a skewed boat conformation and the enforced strain in the molecule results in non-planar distortions in the pyridine rings with only small distortions in the amide groups. The molecules pack in sheets parallel to (10$\text{1}$) and the hydrogen-bonding network involves the water molecules and the amide oxygen atoms of the ligand.     

Complexes of hybrid ligands. Synthesis of mixed-ligand,phosphino-alkoxide complexes of Pd2+: the crystal and molecular structure of the complex Ph2 PCH2C(CF3 )2OPdCl(PPh2Me)

The hybrid, bidentate, diarylphosphino-alkoxide ligand PPh₂CH₂C(CF₃)₂O⁻, L¹, gives the Pd²⁺ bis- complex Pd(L¹)₂, from which the chloride-bridged dinuclear complex [(L¹)Pd(μ-Cl)₂Pd(L¹)] is made by reaction with PdCl₂(PhCN)₂. Cleavage of the dinuclear complex with monodentate ligands L² then gives Pd(L¹)Cl(L²) (L² =PPh₃, PPh₂Me, PPhMe₂, PMe₃, SMe₂, or pyridine); NMR data show that PR₃ is cis to the phosphine site in L¹ in these complexes, but SMe₂ or pyridine are probably trans.A complete crystal and molecular structural determination has been made for cis-Pd(L¹)Cl(PPh₂Me). Crystals are monoclinic, space group P2₁/c, a = 10.821(1), b = 14.600(1), c = 18.674(2) Å, β = 101.25(1)°, V = 2893 ų, Z = 4. Least-squares refinement on F of 361 variables using 3977 observations converged at a conventional agreement factor R = 0.025. The complex is square-planar, with the two phosphines cis; the 5-membered chelate ring is in a dissymmetric envelope conformation. The PdP bonds differ in length, with that to the unidentate phosphine, 2.259(1) Å, being significantly longer than that to the phosphine on the chelating ligand, 2.231(1) Å.     

Preparation,crystal and molecular structure of GdCl3(18-crown-6)·EtOH

The structure of the title compound has been determined from single-crystal X-ray analysis. The triclinic cell has dimensions a = 13.225(3), b = 10.246(2), c = 8.283(2) Å, α = 112.1(1), β = 101.9(1) and γ = 85.0(1)°, space group P$\text{1}$, Z = 2. The structure was refined by least square methods to the conventional R value 0.032 for 2791 observed reflections. The molecule is formed by [GdCl₂EtOH(18-crown-6)]⁺ cations and Cl^? anions. In the cation the crown ether ligand, which includes the Gd ion, is folded away from the side where a chlorine and the ethanolic oxygen are coordinated to the metal ion; a second chloride ion is coordinated on the opposite side.     

The crystal structure of galactaric acid (mucic acid) at −147°: An unusually dense,hydrogen-bonded structure

Galactaric acid, C₆H₁₀O₈, (CAS Reg. No. 526-99-8), is triclinic, P$\text{1}$, with cell dimensions at ?147° [and 20°], a = 4.900(1) [4.918(1)], b = 5.728(1) [5.816(1)], c = 6.784(1) [6.849(1)] Å, α = 92.32(2) [92.31(2)], β = 93.74(2) [94.16(2)], γ = 93.08(2) [93.49(2)]°, V = 189.5 ų, Z = 1, D_x = 1.831 [1.800], D_m = [1.790] g.cm^?3, molecular symmetry $\text{I}$. The structure was solved by the direct method, MULTAN, and refined to R = 0.034, R_w = 0.039 for 787 reflections with F_Obs > 3σ(F_obs). The crystal structure has a system of strong, intermolecular hydrogen-bonds, which accounts for the high crystal density and low solubility in water.     

The structure of 1,3-diphenyl-1,3-propandionatobis(triphenylantimony)diphenylrhodium(III)dibenzene

1,3-Diphenyl-1,3-propandionatobis(triphenylantimony)diphenylrhodium(III)dibenzene, [Rh(DPD)(SbPh₃)₂Ph₂]·2(C₆H₆) has been isolated as the product of the reaction between the Rh(I) complex 1,3-diphenyl-1,3-propandionatodicarbonylrhodium(I), [Rh(DPD)(CO)₂], and triphenylantimony in acetone and in n-hexane medium. The crystal and molecular structure was determined from single crystal X-ray diffractometer data. The unit cell is triclinic with a = 19.083, b = 13.167, c = 13.536 Å, α = 81.81°, β = 111.59°, γ = 100.49°, Z = 2 and space group P_$\text{1}$. The structure was refined to a R-value of 0.079 for 6637 contributing reflections. The coordination polyhedron can be described as a slightly distorted octahedron in which the Rh-atom is coordinated by two phenyl groups, two oxygen atoms of a chelate ring, which are in cis position to one another, and two antimony-atoms of the two SbPh₃ ligands, which are in trans positions.