AFLP fingerprinting shows that a single Prymnesium parvum harmful algal bloom consists of multiple clones

Due to slow rates of molecular evolution, DNA sequences used to identify and build phylogenies of algal species involved in harmful algal blooms (HABs) are generally invariant at the intraspecific level. This means that it is unknown whether HAB events result from the growth of a single clone, a few dominant clones, or multiple clones. This is true despite the fact that several physiological and demographic traits, as well as toxicity, are known to vary across clones. We generated AFLP fingerprints from a set of 6 clonal isolates, taken from a bloom of Prymnesium parvum at a striped bass mariculture facility. This new haptophyte bloom was recently implicated in fish kills at several sites in the United States. The AFLP fragments were highly reproducible and showed that all isolates were distinguishable due to abundant AFLPs unique to single isolates. These results demonstrate that blooms can be genetically diverse outbreaks and indicate that AFLP can be a powerful molecular tool for characterizing and monitoring this diversity.     

Modelling of autumn plankton bloom dynamics

A simple system of parametrically forced ordinary differentialequations is used to model autumn phytoplankton blooms in temperateoceans by a mechanism involving deepening of the upper mixedlayer. Blooms are triggered provided the increase in nutrientsin the mixed layer is rapid within the first few days of deepeningand provided light-limited phytoplankton growth rate is relativelyhigh. Blooms exist as transient trajectories between quasi-equilibriumstates, rather than as bifurcations of steady states; thereforevery gradual deepening cannot trigger blooms. Very rapid deepeningalso prevents blooms due to the deleterious effect on phytoplanktongrowth rate. The mechanisms identified by this simple modelare vindicated by considering alternative grazing and deepeningregimes and by comparison with a more ecologically complex model(Fasham, 1993, in The Global Carbon Cycle, Springer-Verlag).Modelled estimates of primary productivity from both the simplemodel and the complex model parameterized for Ocean WeatherStation ‘India’ are around 0.5 g C m^–2 day^–1during the autumn bloom, therefore comprising a significantcomponent of annual production in temperate areas.     

The ecophysiology of early angiosperms

Angiosperms first appeared during the Early Cretaceous, and within 30 million years they reigned over many floras worldwide. Associated with this rise to prominence, angiosperms produced a spectrum of reproductive and vegetative innovations, which produced a cascade of ecological consequences that altered the ecology and biogeochemistry of the planet. The pace, pattern and phylogenetic systematics of the Cretaceous angiosperm diversification are broadly sketched out. However, the ecophysiology and environmental interactions that energized the early angiosperm radiation remain unresolved. This constrains our ability to diagnose the selective pressures and habitat contexts responsible for the evolution of fundamental angiosperm features, such as flowers, rapid growth, xylem vessels and net-veined leaves, which in association with environmental opportunities, drove waves of phylogenetic and ecological diversification. Here, we consider our current understanding of early angiosperm ecophysiology. We focus on comparative patterns of ecophysiological evolution, emphasizing carbon- and water-use traits, by merging recent molecular phylogenetic studies with physiological studies focused on extant basal angiosperms. In doing so, we discuss how early angiosperms established a roothold in pre-existing Mesozoic plant communities, and how these events canalized subsequent bursts of angiosperm diversification during the Aptian-Albian.     

The ecophysiology of foliar anthocyanin

The accumulation of foliar anthocyanins can be consistently attributed to a small range of contexts. Foliar anthocyanin accumulates in young, expanding foliage, in autumnal foliage of deciduous species, in response to nutrient deficiency or ultraviolet (UV) radiation exposure, and in association with damage or defense against browsing herbivores or pathogenic fungal infection. A common thread through these causative factors is low photosynthetic capacity of foliage with accumulated anthocyanin relative to leaves at different ontogenetic stages or unaffected by the environmental factor in question. The ecophysiological function of anthocyanin has been hypothesized as: 1) a compatible solute contributing to osmotic adjustment to drought and frost stress; 2) an antioxidant; 3) a UV protectant; and 4) protection from visible light. Review of the internal leaf distribution of anthocyanin, of experimental evidence using seedlings, and of studies that directly investigated light absorption by anthocyanin and its development relative to recognized processes of photoprotection support the hypothesis that anthocyanins provide protection from visible light.     

The dynamics of predation on Gammarus spp. (Crustacea: Amphipoda)

Gammarus spp. (Crustacea: Amphipoda) are widespread throughout a diverse range of marine, freshwater and estuarine/brackish habitats, often dominating benthic macroinvertebrate communities in terms of both numbers and/or biomass. Gammarus spp. are the dominant macroinvertebrate prey items of many fish, whether as a seasonal food source or a year-round staple. Selective predation by fish on Gammarus spp. is often linked to parasitism and the body size of the prey. Gammarus spp. populations are under increasing threat from both pollution and replacement/displacement by introduced species. Loss of populations and species invasions/replacements could have significant impacts on native predator species if the predator(s) cannot successfully adapt their feeding patterns to cope with non-indigenous Gammarus prey species. Despite this, many fish predation studies do not identify Gammarus prey to species level. This lack of precision could be important, as Gammarus spp. exhibit wide variations in physiochemical tolerances, habitat requirements, abilities to invade and susceptibility to replacement. Although rarely acknowledged, the impacts of nonpiscean predators (particularly macroinvertebrates) on Gammarus prey species may frequently be stronger than those exerted by fish. A major aim of this review is to ascertain the current importance of Gammarus as a prey species, such that the implications of changes in Gammarus spp. populations can be more accurately assessed by interested groups such as ecologists and fisheries managers. We also review the dynamics of Gammarus spp. as prey to a diverse array of mammals, birds, amphibians, insects, flatworms, other crustaceans such as crabs and crayfish and, perhaps most importantly, other Gammarus spp.     

Between-year variation and spatial dynamics of Cryptosporidium spp. and Giardia spp. infections in naturally infected rodent populations

Prevalence and abundance of Cryptosporidium spp. and Giardia spp. infections were studied over the 8-year period in 3 species of rodents in N.E. Poland (bank vole Myodes glareolus-1523; yellow-necked mouse Apodemus flavicollis- 638; common vole Microtus arvalis- 419). Prevalence was 53.8, 28.1 and 62.3% respectively for Cryptosporidium spp. and 58.3, 24.4 and 74.2% respectively for Giardia spp. Prevalence and abundance of infection varied markedly across 8 years of the study with 1998 and 2002 being years of higher prevalence and abundance, following changes in the densities of host species. The distribution of intestinal protozoa in forest rodents did not vary in the 3 isolated sites during the 4-year study. In the case of Cryptosporidium, fewer older animals carried infection and infections of the oldest bank and common voles were relatively milder. In the case of Giardia in yellow-necked mice, infections were more common in older age classes (2 and 3). The two species showed significant co-occurrence and in animals carrying both species there was a strong significant positive correlation between abundance of infection with each. These data are discussed in relation to the parasite genotypes identified in this region and in respect of the role of various ecological factors in shaping of intestinal protozoa communities.     

Life-history stages of natural bloom populations and the bloom dynamics of a tropical Asian ribotype of Alexandrium minutum

In 2015, a remarkably high density bloom of Alexandrium minutum occurred in Sungai Geting, a semi-enclosed lagoon situated in the northeast of Peninsular Malaysia, causing severe discoloration and contaminated the benthic clams (Polymesoda). Plankton and water samples were collected to investigate the mechanisms of bloom development of this toxic species. Analysis of bloom samples using flow cytometry indicated that the bloom was initiated by the process of active excystment, as planomycetes (>4C cells) were observed in the early stage of the bloom. Increase in planozygotes (2C cells) was evident during the middle stage of the bloom, coinciding with an abrupt decrease in salinity and increase of temperature. The bloom was sustained through the combination of binary division of vegetative cells, division of planozygotes, and cyst germination through continuous excystment. Nutrient depletion followed by precipitation subsequently caused the bloom to terminate. This study provides the first continuous record of in situ life-cycle stages of a natural bloom population of A. minutum through a complete bloom cycle. The event has provided a fundamental understanding of the pelagic life-cycle stages of this tropical dinoflagellate, and demonstrated a unique bloom development characteristic shared among toxic Alexandrium species in coastal embayments.     

Lysogeny and lytic viral production during a bloom of the cyanobacterium Synechococcus spp

Lytic viral production and lysogeny were investigated in cyanobacteria and heterotrophic bacteria during a bloom of Synechococcus spp. in a pristine fjord in British Columbia, Canada. Triplicate seawater samples were incubated with and without mitomycin C and the abundances of heterotrophic bacteria, cyanobacteria, total viruses and infectious cyanophage were followed over 24 h. Addition of mitomycin C led to increases in total viral abundance as well as the abundance of cyanophages infecting Synechococcus strain DC2. Given typical estimates of burst size, these increases were consistent with 80% of the heterotrophic bacteria and 0.6% of Synechococcus cells being inducible by the addition of mitomycin C. This is the highest percentage of lysogens reported for a natural microbial community and demonstrates induction in a marine Synechococcus population. It is likely that the cyanophage production following the addition of mitomycin C was much higher than that titered against a single strain of Synechococcus; hence this estimate is a minimum. In untreated seawater samples, lytic viral production was estimated to remove ca. 27% of the gross heterotrophic bacterial production, and a minimum of 1.0% of the gross cyanobacterial production. Our results demonstrate very high levels of lysogeny in the heterotrophic bacterial community, outside of an oligotrophic environment, and the presence of inducible lysogens in Synechococcus spp. during a naturally occurring bloom. These data emphasize the need for further examination of the factors influencing lytic and lysogenic viral infection in natural microbial communities.     

Linking clonal growth patterns and ecophysiology allows the prediction of meadow-scale dynamics of seagrass beds

Seagrasses are a group of 12 genera of monocotyledonous plants in four families that have successfully colonised shallow coastal seas, probably since the Cretaceous. Variations in light availability and water movement are prime environmental factors for the growth of these marine angiosperms. An overall similarity in growth form and modular clonal architecture allows the generalisation that small species have short-lived shoots with rapidly elongating rhizome axes, whilst the larger species have longer-lived shoots that do not expand rapidly with rhizomes. Annual rhizome elongation rates range between 2 cm and 4 m among species. This range in expansion capacity is correlated with rhizome diameter in an allometric fashion (y=191x^?1.5, r²=0.58, p<0.05). Rhizomes with a wider diameter also allow the storage of larger quantities of reserve carbohydrates to be mobilized during the adverse winter season at higher latitudes or for flowering. Repeated branching and the basal positioning of the meristems allow the formation and maintenance of seagrass meadows, and these are a prominent feature creating spatial heterogeneity on the sea floor down to a mean colonisation depth of 15.1±1.3 m (median 8 m, range 0.7–90 m, n=150). Spatial complexity is highest in multi-species seagrass beds, such as those of the Indo-Pacific region and Australia. Seagrass beds function as important coastal filters for nutrients and pollutants and display high carbon sequestration rates. Due to the recalcitrant nature of seagrass detritus, it forms a disproportionally high contribution (12%, but only 1% of productivity) to the carbon stored in ocean sediments. The services provided by these ecosystems to human society range from water quality improvement via nursery and feeding grounds for economically important fish to storm buffering and recreative amenity.     

The effects of global warming on Daphnia spp. population dynamics: a review

Various species of Daphnia usually play a key role in the food web of temperate freshwater systems. There is much evidence to show that climate change may influence Daphnia population dynamics, consequently altering both predator–prey interactions and the efficiency of algal biomass control in these ecosystems. This review will analyse and discuss the current knowledge on Daphnia responses to climate warming based on an analysis of selected papers. The presented results indicate that warming may have important direct and indirect effects on Daphnia biology and ecology via its influence on their life-history processes (metabolism, growth, reproduction) and the properties of their habitats. The plasticity of daphnids in terms of adaptive responses is generally high and includes phenotypic adaptations and changes in genotypes, although it also depends upon the strength of selection and the available genetic variation. The seasonal timing and magnitude of temperature increases are important for seasonal biomass fluctuations of Daphnia and similarly influence the potential synchrony of daphnids and phytoplankton succession (the timing hypothesis). In light of the most recent studies on this topic, even a minor warming during short but critical seasonal periods can cause factors that disturb Daphnia population dynamics to coincide, which may destabilize lake food webs by decoupling trophic interactions. Both winter and spring are important critical periods for determining future seasonal fluxes of Daphnia spp. and, consequently, the time of the clear-water phase and the occurrence and duration of Daphnia midsummer decline. Winter conditions may also affect the impact of fish predation on daphnids during summer months. However, the effects of global warming on Daphnia population dynamics and on ecosystem functioning are often difficult to predict due to their complexity and the presence of both antagonistic and synergistic drivers. Thus, the diverse responses of daphnids to climate anomalies depend on both biotic (predator abundance and seasonal phytoplankton succession) and abiotic factors (e.g. hydrodynamics, intensity and duration of thermal stratification, trophic state or geomorphology) of lakes, which are directly influenced by weather changes. The analysis and quantification of such complex interactions require the involvement of different kinds of specialists and the development of accurate research approaches, such as molecular genetic methods or mathematical modelling.     

Simulating boreal forest dynamics from perspectives of ecophysiology,resource availability,and climate change

Boreal forests are under strong influences from climate change, and alterations in forest dynamics will have significant impacts on global climate-biosphere feedback as well as local to regional conservation and resource management. To understand the mechanisms of forest dynamics and to assess the fate of boreal forests, simulation studies should be based on plant ecophysiological responses onto environmental conditions. In central Canadian boreal forests, local geomorphology created by past glacial activities often generates a mosaic of very distinctive forest types. On sandy hilltop of a glacial till, due to limitations in moisture availability and short fire return intervals, drought-tolerant and fire-adapted jack pine usually becomes the dominant species. On mesic and nutrient-rich slopes, fast-growing and resource-demanding trembling aspen forms mixed forests with coniferous species. In bottomland, black spruce, slowly growing but tolerant species, is often the only species that can survive to the adult stage. These three very distinctive forest types often occur within a scale of 10 m. Simulation models of boreal forests should be able to reproduce this heterogeneity in forest structure and composition as an emergent property of plant ecophysiological responses to varying environmental properties. In this study, a process-based forest dynamics model, ecosystem demography model version 1.0, is used to mechanically reproduce the landscape heterogeneity due to edaphic variations. First, boreal tree species of northern Manitoba, Canada, are parameterized according to field observations, and, to explicitly capture interactions among tree saplings, allometric equations based on diameter at height of 0.15 m, instead of the conventional breast height of 1.37 m, is parameterized. Then, soil moisture regime and nutrient concentrations are statistically incorporated from a dataset. The resultant simulation successfully reproduces the distinctive forest dynamics influenced by the edaphic heterogeneity. The sequences of succession and the trajectories of forest development are generally consistent with the field observations. The differences in resource availability are the essential control on equilibrium values of total forest leaf area index. Next, to show the effect of anthropogenic atmospheric changes, changes in temperature and CO₂ concentrations are studied by a set of factorial experiments. The magnitude of CO₂ fertilization is largely affected by soil fertility. The temperature rise will increase the length of growing season, but can have a negative impact on forest growth by increasing aridity and autotrophic respiration. Overall, the boreal forest responses to climate change are complex due to the inherent edaphic variations and ecophysiological responses.     

银耳及其伴生菌营养生理生态研究

本文分析了银耳与其伴生菌在木屑培养基和废棉渣培养基上生长期间,栽培基质中主要成分的降解规律及其有关的酶学基础。试图从营养生理角度探讨银耳与其伴生菌之间的生态关系。实验结果表明,银耳菌单独在木质纤维素上生长时,不能形成子实体。当银耳与伴生菌生长在一起时,银耳菌在木质纤维废物上生长发育良好,可形成子实体。银耳子实体生长对培养基中的纤维素降解有促进作用。     

太湖水华期间有毒和无毒微囊藻种群丰度的动态变化

采用荧光定量PCR技术分析太湖3个湖区(梅梁湾、贡湖湾和湖心)水体中有毒和无毒微囊藻基因型丰度及有毒微囊藻比例的季节变化(2010年4-9月),并与环境因子进行统计分析。结果表明,有毒微囊藻基因型丰度及所占比例存在季节和空间差异:从4-8月,有毒微囊藻基因型丰度及其比例呈逐渐增加趋势,到9月开始下降;梅梁湾水体中有毒微囊藻基因型丰度及其比例高于贡湖湾和湖心。梅梁湾、贡湖湾和湖心有毒微囊藻在微囊藻种群中的比例变化范围分别为(26.2±0.8)%-(64.3±2.2)%、(4.4±0.2)%-(22.1±1.8)%和(10.4±0.4)%-(20.6±1.5)%。相关分析结果表明,有毒微囊藻丰度、总微囊藻丰度和叶绿素a浓度呈极显著正相关(P<0.01),均与温度呈显著正相关(P<0.05);有毒微囊藻比例与磷浓度呈显著正相关(P<0.05),与温度呈极显著正相关(P<0.01)。研究结果表明,温度和磷浓度是决定太湖有毒微囊藻种群丰度及其比例的关键因子。     

Population dynamics of Aeromonas spp. in an urban river watershed

Density of Aeromonas spp. at one site in the Buffalo River and at four sites on its upstream tributaries was followed from June 1992–June 1993. Membrane filtration counts of Aeromonas during the summer ranged between 18 and 4000 ml⁻¹, which were one to two logs higher than faecal coliform and faecal streptococci densities. Aeromonas spp. in the Buffalo River, and faecal coliforms, faecal streptococci, and the heterotrophic plate count throughout the watershed, increased by approximately one log during summer rainstorms. However, Aeromonas spp. increased only by a factor of two during rainstorms at the upstream sites. Aeromonas spp. showed a strong positive correlation with both indicator bacteria and total suspended solids at the upstream sites during the summer but not the winter. Correlations between Aeromonas and indicator bacteria remained strong in the Buffalo River during the winter, signifying that different conditions exist in the Buffalo River and its upstream tributaries. The strong correlation between Aeromonas spp. and indicator bacteria in the Buffalo River suggest that, in the absence of media capable of the quantitative recovery of potentially pathogenic aeromonads, standard faecal coliform analyses may adequately assess public health risks from Aeromonas spp. in an urban river used for recreational purposes.     

Coupling planktonic and benthic shifts during a bloom of Alexandrium catenella in southern Chile: Implications for bloom dynamics and recurrence

Cell abundances and distributions of Alexandrium catenella resting cysts in recent sediments were studied along time at two locations in the Chilean Inland Sea exposed to different oceanographic conditions: Low Bay, which is much more open to the ocean than the more interior and protected Ovalada Island. The bloom began in interior areas but maximum cyst concentrations were recorded in locations more open to the ocean, at the end of the Moraleda channel. Our results showed a time lapse of around 3 months from the bloom peak (planktonic population) until the number of resting cysts in the sediments reached a maximum. Three months later, less than 10% of the A. catenella cysts remained in the sediments. Maximum cyst numbers in the water column occurred one month after the planktonic peak, when no cells were present. The dinoflagellate assemblage at both study sites was dominated by heterotrophic cysts, except during the A. catenella bloom. CCA analyses of species composition and environmental factors indicated that the frequency of A. catenella blooms was associated with low temperatures, but not with salinity, chlorophyll a concentration, and predator presence (measured as clam biomass). However, resting cyst distribution was only related to cell abundance and location. The occurrence of A. catenella cysts was also associated with that of cysts from the toxic species Protoceratium reticulatum. By shedding light on the ecological requirements of A. catenella blooms, our observations support the relevance of encystment as a mechanism of bloom termination and show a very fast depletion of cysts from the sediments (<3 months), which suggest a small role for resting cyst deposits in the recurrence of A. catenella blooms in this area.