Review and evaluation of estuarine biotic indices to assess benthic condition

Recently there has been a growing interest and need for sound and robust ecological indices to evaluate ecosystem status and condition, mainly under the scope of the Water Framework Directive implementation. Although the conceptual basis for each index may rely on different assumptions and parameters, they share a common goal: to provide a useful tool that can be used in assessing the system's health and that could be applied in decision making. This paper focuses mainly on benthic community-based, biotic indices. We supply a general overview of several indices premises and assumptions as well as their main advantages and disadvantages. Furthermore, an illustrative example is provided of a straightforward application of benthic index of biotic integrity and benthic condition index. As a reference, their performance is compared to the Portuguese-benthic assessment tool. Limitations of the tested indices are discussed in context of the Mondego estuary (Portugal) case study.     

The response of two estuarine benthic communities to the quantity and quality of food

Experimental manipulations of food supply were performed on soft sediment cores from two European estuaries, the Westerscheldt and the Gironde, with a view to determining benthic macrofaunal community response. Over a period of twenty weeks in a laboratory mesocosm system, both communities showed losses in terms of numbers of individuals and small, but non-significant, losses in terms of numbers of species. Whereas no effect of the different types of foods or the dose levels at which they were supplied was detected for the Westerscheldt benthic community, that of the Gironde showed some significant response. This was largely attributed to the differential mortality of spionid polychaetes across the dose levels used, with the highest dose, equivalent to 200 g C m^–2 yr^–1, only just maintaining their initial population densities. The results are discussed in terms of the importance of lateral advection of food particles at the benthic boundary layer and the general insufficiency of many estimates of carbon input to shallow benthic systems.     

Using functional traits to predict grassland ecosystem change: a mathematical test of the response-and-effect trait approach

The role of plant community structure and plant functional traits for above- and belowground carbon (C) fluxes was studied for 2 years in a mesocosm experiment with grassland monoliths, using continuous gas exchange measurements and soil analyses. Here we test the response-and-effect trait hypothesis, by applying a mathematical framework used to predict changes in C fluxes after a change in disturbance through the community response ( R ) and effect ( E ) traits. Monoliths were extracted from two contrasted long-term field treatments (high vs. low grazing disturbance) and exposed to both low and high (simulated grazing) disturbance during a 2 years experiment. Carbon dioxide exchanges were measured continuously in an open flow system. Net ecosystem productivity and ecosystem C balance were positively correlated at low disturbance with plant species richness. Aboveground net primary productivity (ANPP) and soil C sequestration were, however, unrelated to these variables. Community aggregated leaf (specific leaf area, leaf dry-matter content) and root and rhizome (specific length, tissue density, diameter) traits responded ( R ) significantly to changes in disturbance, indicating an increased dominance of conservative plant growth strategies at low compared with high disturbance. Applying the mathematical framework, ANPP was predicted by distribution of leaf traits within the community (functional divergence), while mean root and rhizome traits had significant effects ( E ) on soil C sequestration, irrespective of the experimental disturbance and of the year. According to highly significant linear regression models, between 6% and 61% of the transient changes in soil C sequestration resulted from community root and rhizome (response-and-effect) traits after a change in disturbance.     

Outlining multi-purpose forest inventories to assess the ecosystem approach in forestry

Abstract

A summary and discussion of selected published results on the current and potential role of forest inventories (with particular reference to the national ones) are presented in the light of the challenges posed by society and policy decisions in the environmental sector. The analysis concentrates mainly on the ecological and socio-economic aspects of the question and on forest inventories' potential contribution to achieving sustainable forest management.     

Use of benthic macroinvertebrates to assess the biological status of Pampean streams in Argentina

Macro-invertebrate communities and environmental variables were assessed seasonally for two years in seven streams in North-Eastern of Buenos Aires province (Argentina) in order to analyse changes in their structure and composition in relation with the quality of the water. The study includes pristine streams and others affected by urban and industrial effluents with high conductivity, nitrates, nitrites, phosphates and low oxygen content. Organisms with well-known pollution tolerance were identified to assess biological water quality, using a new Biotic Index (IBPAMP: Biotic Index for PAMPean rivers and streams) in comparison with other existing biotic indices. The usefulness of principal component analysis (PCA) and correlation matrices were examined to evaluate the efficiency of the method to assess disturbances. In general IBPAMP did well correlate with several classical measures of biological water quality (taxon richness, diversity and several biotic indices). The El Gato stream was the most disturbed ecosystem among all studied sites. It was characterised by low dissolved oxygen levels, high turbidity in the middle course, high BOD5 (>30 mg l^–1) and COD (>40 mg l^–1) values. The Buñirigo stream has a bad quality in the industrial area, but varying according to the dry and wet periods. In general, in the mountainous areas the water quality of streams was good with the exception of the stations located downstream of cities like Ayacucho on the Tandileofú stream.     

A tale of two green walls: a functional trait approach to assess vegetation establishment on restored steep slopes

Green walls (GWs) have been increasingly recognized as an important restoration technique for steep slopes resulting from quarrying activities or major infrastructure construction projects. In practice, GW irrigation is considered essential, although studies evaluating vegetation establishment under different irrigation regimes are lacking. Besides taxonomic metrics, functional diversity measures were used to compare the diversity and composition of plant communities of two hydroseeded GWs, with different irrigation regimes (irrigated vs. low‐irrigated). The studied GWs were installed in Peneda‐Gerês National Park (NW Portugal) to minimize the visual impact of shotcrete walls, along a road infrastructure, and promote their ecological restoration. Species' cover was recorded 3 years after installation. Species were classified according to their growth form, life form, and life strategy. Despite hydroseeding approximately 57 species, GW vegetation was dominated by spontaneous species, particularly acrocarpous mosses, regardless of irrigation regime. Species and functional richness were higher under irrigated conditions, while no differences were observed for species diversity and functional dispersion. Functional trait composition did not differ between GWs, indicating that both systems potentially provide the same ecosystem functions and services. Our results also suggest that spontaneous species colonizing GWs are highly adapted to local environmental conditions, given their dominance in both irrigated and low‐irrigated communities. Overall, irrigation did not affect the structure and functioning of GW communities, only their redundancy, since more species exhibiting similar traits were established in the irrigated GW. Therefore, our findings suggest that low‐irrigated GWs, hydroseeded with native species, represent a more cost‐effective solution to reduce the ecological impacts of steep slopes.     

Methods for biological monitoring: Biological interactions in communities of subtidal sediments

Predation has been demonstrated to be of fundamental importance in structuring benthic communities in the intertidal zone. The aim of the present investigation was to elucidate some of the effects of predation on structuring communities in unvegetated subtidal sediments. Field manipulative cage experiments were performed on sediment in the inner part of the Oslofjord (Norway), where the species composition was typical for a moderately organically enriched sediment. Sediment from this area was transferred to an area not suspected a priori to be seriously affected by organic pollution, and the effect of predation on the fauna was evaluated. Predation effects were not observed in the Oslofjord experiments partially because of extensive obstruction of recruitment to the sediment by settlement ofPolydora antennata on the cage; however, further experiments are in progress in this area. No such settling was observed in the unpolluted area. Here 63 taxonomic groups were identified, 57 in the control and 50 in the cages; 43 taxonomic groups were found in both the cage and the control. The total number of individuals was significantly higher in the cage (4779) than in the control (2849). The fauna recruited to the sediment in the cage responded to decreased predation by macropredators by a significant reduction in diversity. Of the 10 most abundant groups 3 (Tellinacea, Syllidae andPholoë minuta) were significantly more abundant in the cage than in the control; 3 others (Prionospio malmgreni, Microphthalmus abberans and Paraonidea) were significantly more abundant in the control. It is concluded that in an unpolluted area predation is an important factor in controlling numbers of at least some of the most abundant species. However, the effect of predation does not seem to be of the same importance in the subtidal as has previously been recognized for unvegetated intertidal mudflats.     

Maintained functional diversity in benthic communities in spite of diverging functional identities

Ecological studies based on time‐series often investigate community changes centered on species abundance or biomass but rarely expose the consequential functional aspects underlying such changes. Functional diversity measures have proven to be more accurate predictors for ecosystem functioning than traditional taxonomic approaches and hence gained much attention. There are only limited studies available that analyse the functional implications behind decadal changes of entire communities. We studied zoobenthic communities of two habitats, sheltered and exposed, of a coastal system subject to contrasting changes in community composition over the past four decades. Besides eutrophication and climate‐related impacts, the system has been invaded by a non‐native polycheate Marenzelleria spp., adding altered functional properties to the communities. The functional dispersion (FDis) metric was used as a measure for comparing the functional diversity of the contrasting habitats, with special focus on the role of Marenzelleria for the entire communities. We highlight changes in the functional identity of the communities, expressed as community‐weighted means of trait expression (CWM), using multivariate techniques, and investigate the relationship between taxonomic and functional changes. Despite contrasting community developments in the two habitats, with characteristics traditionally suggesting different environmental quality, we found that the FDis in both habitats remained similar and increased with the introduction of Marenzelleria. Although showing maintained functional diversity across time and space, the functional identity (CWM) of communities changed irrespective of taxonomical differences. Examples include inter alia alterations in palatability proxies, feeding position and sediment transportation types, indicating changed functionality of zoobenthos in coastal systems. We show, when focussing on qualitative functional changes of communities, it is important to evaluate the underlying functional identity, and not only rely on measures of the diversity of functions per se, as the quality indication of expressed functional traits can be concealed when using multi‐functionality approaches.     

Response of an estuarine ecosystem to reduced organic waste discharge

Since the mid-19^th century large amounts of organic wastewere sluiced out into the Ems Estuary on the border between Germany and TheNetherlands. This waste originated from the regional potato flour and cardboardindustries making the inland waterways completely anoxic. In the estuaryseriousoxygen depletion occurred, especially during autumn. Most of the organic wasteentered the estuary in the Dollard, a brackish embayment of the Ems Estuary. Anintensive sanitation scheme was started in the 1970s, leading to a stepwisereduction of the organic waste load on the estuary. In this paper, a review isgiven of the response of the benthos living at intertidal mudflats,viz. microphytobenthos (diatoms), meiofauna (nematodes)andmacrozoobenthos. The benthos response is described mainly on the basis of dataobtained under conditions of high (ca. 1980), intermediate (1987) and largelyreduced (1993) organic waste loading.Reduction of organic loading caused significant changes in abundance, speciescomposition and standing stock of diatoms and nematodes. Macrobenthicpopulations recovered from being severely reduced regularly during the autumnalwaste discharges towards a more stable situation. Altogether, the intertidalmudflat benthos changed from organic waste loading stress towards a normal,estuarine environmental stress. This was especially the case at high and muddyflats in the southeast of the Dollard. At mixed sand/mud flats in the centre ofthe Dollard, a response of macrozoobenthos may have been obscured by theinvasion of the polychaete Marenzelleria cf.wireni.     

A functional trait approach to identifying life history patterns in stochastic environments

Temporal variation in demographic processes can greatly impact population dynamics. Perturbations of statistical coefficients that describe demographic rates within matrix models have, for example, revealed that stochastic population growth rates (log(λ_s)) of fast life histories are more sensitive to temporal autocorrelation of environmental conditions than those of slow life histories. Yet, we know little about the mechanisms that drive such patterns. Here, we used a mechanistic, functional trait approach to examine the functional pathways by which a typical fast life history species, the macrodetrivore Orchestia gammarellus, and a typical slow life history species, the reef manta ray Manta alfredi, differ in their sensitivity to environmental autocorrelation if (a) growth and reproduction are described mechanistically by functional traits that adhere to the principle of energy conservation, and if (b) demographic variation is determined by temporal autocorrelation in food conditions. Opposite to previous findings, we found that O. gammarellus log(λ_s) was most sensitive to the frequency of good food conditions, likely because reproduction traits, which directly impact population growth, were most influential to log(λ_s). Manta alfredi log(λ_s) was instead most sensitive to temporal autocorrelation, likely because growth parameters, which impact population growth indirectly, were most influential to log(λ_s). This differential sensitivity to functional traits likely also explains why we found that O. gammarellus mean body size decreased (due to increased reproduction) but M. alfredi mean body size increased (due to increased individual growth) as food conditions became more favorable. Increasing demographic stochasticity under constant food conditions decreased O. gammarellus mean body size and increased log(λ_s) due to increased reproduction, whereas M. alfredi mean body and log(λ_s) decreased, likely due to decreased individual growth. Our findings signify the importance of integrating functional traits into demographic models as this provides mechanistic understanding of how environmental and demographic stochasticity affects population dynamics in stochastic environments.     

An isoclinal approach to the comparative statics of biological communities

An understanding of the comparative statics of biological communities is important both as a means of explaining the long-term effects of changes in environmental conditions, and as a framework for viewing community time trajectories. A general formulation of community dynamics is presented here which, given full information about a particular community's dynamic behavior, describes the impact of a change in environmental conditions on the community steady state. However, since such full information is often lacking in studies of biological communities, various approaches to partial information analysis of comparative statics are presented and compared, including a generalized protocol for isocline analysis. The suggested isocline protocol is shown to be a useful tool for both full and partial information analyses, as well as for both general and partial equilibrium studies. This work was supported over several years through funding from the International Biological Program, the Oregon State University Sea Grant College Program, the U.S. Environmental Protection Agency, the U.S. Forest Service, the Electric Power Research Institute, and the Northwest and Alaska Fisheries Center.     

Role of non-indigenous species in structuring benthic communities after fragmentation events: an experimental approach

Biological Invasions - Habitat loss and fragmentation, and biological invasions are widely considered the most significant threats to global biodiversity. While marine invasions have already shown...     

Contrasting functional trait syndromes underlay woody alien success in the same ecosystem

We performed a comprehensive comparative study of functional traits in coexisting alien and native woody species in order to examine the strategies related to resource use and dispersion underlying alien success in mountain Chaco woodlands of central Argentina. Our approach integrated seemingly contrasting pieces of evidence in the region. We specifically assessed whether (i) the ‘functional acquisitive trend’ previously observed along a broad environmental gradient accounts for woody alien naturalization when considering a single mesic ecosystem; or (ii) more than one trait syndrome is important among alien species, which would be more in line with the context‐dependent nature of biological invasions at a local scale. Fifteen vegetative and regenerative traits were measured on the most common 14 native and 11 alien woody species. We compared the attributes of (i) native and alien species and (ii) between native species and two contrasting groups of alien species identified in the previous analysis. The overall trait comparison (i) showed that, in terms of vegetative attributes, woody alien species tend to be on average more acquisitive than native species. However, (ii) two contrasting syndromes were revealed among alien species: a group of seven deciduous species with acquisitive attributes; and a group of four evergreen species showing markedly more conservative attributes than the first group. The functional attributes of ‘conservative aliens’ completely overlapped with the range observed for native species, except for an exclusive dispersal phenology and a stronger tendency to clonal spread. Acquisitive aliens, in turn, proved to be beyond the range of attributes of native species, at the acquisitive extreme, as they did in previous comparisons. Despite their importance, general trends in plant functional attributes across regions and ecosystems can sometimes obscure trends at more local scales that are nevertheless important for the understanding and management of particular systems. Our study concurs with previous general trends when looking at the overall comparison between native and alien species, but unveils contrasting functional strategies among alien species when examining their attributes more closely, even within the same ecosystem.     

Response of benthic macroinvertebrate communities to highway construction in an Appalachian watershed

Highway construction in mountainous areas can result in sedimentation of streams, negatively impacting stream habitat, water quality, and biotic communities. We assessed the impacts of construction of a segment of Corridor H, a four-lane highway, in the Lost River watershed, West Virginia, by monitoring benthic macroinvertebrate communities and water quality, before, during, and after highway construction and prior to highway use at upstream and downstream sites from 1997 through 2007. Data analysis of temporal impacts of highway construction followed a Before-After-Control-Impact (BACI) study design. Highway construction impacts included an increase in stream sedimentation during the construction phase. This was indicated by an increase in turbidity and total suspended solids. Benthic macroinvertebrate metrics indicated a community more tolerant during and after construction than in the period before construction. The percent of Chironomidae and the Hilsenhoff Biotic Index (HBI) increased, while percent of Ephemeroptera, Plecoptera, and Trichoptera (EPT) decreased. Our 10-year study addressed short-term impacts of highway construction and found that impacts were relatively minimal. A recovery of the number of EPT taxa collected after construction indicated that the benthic macroinvertebrate community may be recovering from impacts of highway construction. However, this study only addressed a period of 3 years before, 3 years during, and 4 years post construction. Inferences cannot be made concerning the long-term impacts of the highway, highway traffic, runoff, and other factors associated with highway use. Continual monitoring of the watershed is necessary to determine if the highway has a continual impact on stream habitat, water quality, and biotic integrity.     

Contribution of sea ice microbial production to Antarctic benthic communities is driven by sea ice dynamics and composition of functional guilds

Organic matter produced by the sea ice microbial community (SIMCo) is an important link between sea ice dynamics and secondary production in near‐shore food webs of Antarctica. Sea ice conditions in McMurdo Sound were quantified from time series of MODIS satellite images for Sept. 1 through Feb. 28 of 2007–2015. A predictable sea ice persistence gradient along the length of the Sound and evidence for a distinct change in sea ice dynamics in 2011 were observed. We used stable isotope analysis (δ¹³C and δ¹⁵N) of SIMCo, suspended particulate organic matter (SPOM) and shallow water (10–20 m) macroinvertebrates to reveal patterns in trophic structure of, and incorporation of organic matter from SIMCo into, benthic communities at eight sites distributed along the sea ice persistence gradient. Mass‐balance analysis revealed distinct trophic architecture among communities and large fluxes of SIMCo into the near‐shore food web, with the estimates ranging from 2 to 84% of organic matter derived from SIMCo for individual species. Analysis of patterns in density, and biomass of macroinvertebrate communities among sites allowed us to model net incorporation of organic matter from SIMCo, in terms of biomass per unit area (g/m²), into benthic communities. Here, organic matter derived from SIMCo supported 39 to 71 per cent of total biomass. Furthermore, for six species, we observed declines in contribution of SIMCo between years with persistent sea ice (2008–2009) and years with extensive sea ice breakout (2012–2015). Our data demonstrate the vital role of SIMCo in ecosystem function in Antarctica and strong linkages between sea ice dynamics and near‐shore secondary productivity. These results have important implications for our understanding of how benthic communities will respond to changes in sea ice dynamics associated with climate change and highlight the important role of shallow water macroinvertebrate communities as sentinels of change for the Antarctic marine ecosystem.     

应用生物完整性指数评价水生态系统健康的研究进展

生物完整性指数(IBI)法是评价水生态系统健康的一种重要且被广泛应用的方法.本文综述了生物完整性指数的指示物种选择原因、构建方法以及在水生态系统健康评价中的应用,并总结了现阶段生态系统评估常用的鱼类完整性指数（F_IBI）、底栖无脊椎动物完整性指数（B_IBI）和着生藻类完整性指数（P_IBI)中候选生物状况参数指标,提出了使用微生物完整性指数(M_IBI)评价水生态系统健康的可行性和必要性.     

The effects of an invasive habitat modifier on the biotic interactions between two native herbivorous species and benthic habitat in a subtidal rocky reef ecosystem

Range expanding species can have major impacts on marine ecosystems but experimental field based studies are often lacking. The urchin Centrostephanus rodgersii has recently undergone a southerly range expansion to the east coast of Tasmania, Australia. We manipulated densities of C. rodgersii and algal regrowth in urchin barrens habitat to test effects of the urchin on biotic interactions between two native herbivores, black-lip abalone (Haliotis rubra) and another urchin (Heliocidaris erythrogramma), and their benthic habitat. After 13 months, removals of only C. rodgersii resulted in overgrowth of barrens habitat by algae and sessile invertebrates. Densities of abalone increased (+92 %) only in patches from which C. rodgersii was removed and algal regrowth allowed. In contrast, densities of H. erythrogramma increased in all treatments (+45, +28, +25 %) in which C. rodgersii was removed, irrespective of the algal regrowth manipulations. These results suggest that C. rodgersii has a negative influence on the densities of abalone through competition for food and on densities of H. erythrogramma through competition for preferred habitat. Densities of abalone (+65 %) but not H. erythrogramma (+25 %), were lower in the patches from which C. rodgersii and canopy algae regrowth were removed relative to patches from which only C. rodgersii was removed (+92 and +28 %, respectively). These results suggest that C. rodgersii overgrazing of canopy-algae results in loss of structural complexity which could increase abalone susceptibility to predation, cause abalone to seek shelter in cryptic microhabitats and/or prevent their return to patches where canopy algae are absent. The ongoing spread of C. rodgersii and expansion of barrens habitat in eastern Tasmania will continue to negatively affect populations of these two native herbivores and their associated fisheries at a range of spatial scales. This example shows that habitat modifying species which become highly invasive can have disproportionate negative impacts on the structure and dynamics of the recipient community.