Phytoplankton community structure during the record Arctic ice-melting of summer 2007

In the summer of 2007, the Arctic Ocean experienced the largest loss of ice cover yet observed. We examined the phytoplankton community composition at several stations in the NE Arctic Sector during the ATOS-Arctic cruise in July 2007, specifically in the Fram Strait and along the permanent ice edge up to 81°N. The prymnesiophyte Phaeocystis pouchetti, present exclusively in its colonial form, dominated the whole phytoplankton community, representing 82.1 ± 3.1% (mean ± SE) of the phytoplankton biovolume in the region. Diatoms, small flagellates and dinoflagellates, expected to dominate the ice-melt waters in this sector of the Arctic Ocean, were practically insignificant, representing 7.3 ± 2.4%, 6.8 ± 1.4% and 4.4 ± 1.2% of phytoplankton biovolume, respectively. The fraction of the phytoplankton biomass that comprised diatoms increased with increasing water temperature and salinity, and was, therefore, negatively associated with the increased load of ice-melt waters. In contrast, the fraction of the biomass that comprised P. pouchetii was not as clearly related to temperature and had a weak tendency to decrease with increasing temperature. This pattern was likely the result of different populations stress, as the percentage of living cells of P. pouchetii increased with increasing salinity and temperature. The exceptional dominance of the colonial form of P. pouchetii during the massive ice losses of summer 2007 provides indication of major changes in phytoplankton community structure and carbon flow with climate change in the Arctic Ocean.     

Composition and distribution of mesozooplankton in the Nansen Basin,Arctic Ocean,during summer

Information about the large-scale zooplankton distribution in the Nansen Basin, that part of the Arctic Ocean most directly influenced by the inflow of Atlantic Water, is still scarce. During the Polarstern expedition ARK IV/3 in July/August 1987 zooplankton from the upper 500 m was sampled along two transects across the western Nansen Basin. Spatial variations in faunal composition, abundance, and biomass are described. Special emphasis is given to the distribution patterns and possible drifting routes of species advected into the Arctic Ocean through Fram Strait. Forty-five species and eight taxa not determined to species level were identified. Copepods clearly dominate in terms of species number, abundance, and biomass. Ostracods and chaetognaths comprise the most important groups of the non-copepod zooplankton. Maximum species numbers were recorded over the abyssal plain around 83°N. Total abundance and biomass decreased by more than 80% towards the northern part of the basin. Cluster analysis revealed two major faunal assemblages, broadly overlapping over the central Nansen Basin, and three principal types of spatial distribution. The well-defined zonation observed in the large-scale zooplankton distribution closely resembles the major hydrographic and topographic features. The opposite movement of the Polar Surface Water and the Atlantic Water in the southern Nansen Basin might cause pronounced deviations between the drifting routes of species with different water mass preferences advected through Fram Strait.     

Abundance and single-cell activity of heterotrophic bacterial groups in the western Arctic Ocean in summer and winter

Environmental conditions in the western Arctic Ocean range from constant light and nutrient depletion in summer to complete darkness and sea ice cover in winter. This seasonal environmental variation is likely to have an effect on the use of dissolved organic matter (DOM) by heterotrophic bacteria in surface water. However, this effect is not well studied and we know little about the activity of specific bacterial clades in the surface oceans. The use of DOM by three bacterial subgroups in both winter and summer was examined by microautoradiography combined with fluorescence in situ hybridization. We found selective use of substrates by these groups, although the abundances of Ant4D3 (Antarctic Gammaproteobacteria), Polaribacter (Bacteroidetes), and SAR11 (Alphaproteobacteria) were not different between summer and winter in the Beaufort and Chukchi Seas. The number of cells taking up glucose within all three bacterial groups decreased significantly from summer to winter, while the percentage of cells using leucine did not show a clear pattern between seasons. The uptake of the amino acid mix increased substantially from summer to winter by the Ant4D3 group, although such a large increase in uptake was not seen for the other two groups. Use of glucose by bacteria, but not use of leucine or the amino acid mix, related strongly to inorganic nutrients, chlorophyll a, and other environmental factors. Our results suggest a switch in use of dissolved organic substrates from summer to winter and that the three phylogenetic subgroups examined fill different niches in DOM use in the two seasons.     

Protist community composition in the Pacific sector of the Southern Ocean during austral summer 2010

Knowledge about the protist diversity of the Pacific sector of the Southern Ocean is scarce. We tested the hypothesis that distinct protist community assemblages characterize large-scale water masses. Therefore, we determined the composition and biogeography of late summer protist assemblages along a transect from the coast of New Zealand to the eastern Ross Sea. We used state of the art molecular approaches, such as automated ribosomal intergenic spacer analysis and 454-pyrosequencing, combined with high-performance liquid chromatography pigment analysis to study the protist assemblage. We found distinct biogeographic patterns defined by the environmental conditions in the particular region. Different water masses harbored different microbial communities. In contrast to the Arctic Ocean, picoeukaryotes had minor importance throughout the investigated transect and showed very low contribution south of the Polar Front. Dinoflagellates, Syndiniales, and small stramenopiles were dominating the sequence assemblage in the Subantarctic Zone, whereas the relative abundance of diatoms increased southwards, in the Polar Frontal Zone and Antarctic Zone. South of the Polar Front, most sequences belonged to haptophytes. This study delivers a comprehensive and taxon detailed overview of the protist composition in the investigated area during the austral summer 2010.     

太湖浮游细菌与春末浮游藻类群落结构演替的相关分析

为研究浮游细菌与浮游藻类群落演替的相关性,2005年4月至6月在太湖5个观测点采集浮游细菌及浮游藻类样本。分别采用聚合酶链式反应-变性梯度凝胶电泳（PCR—DGGE）和显微观察的方法分析浮游细菌及浮游藻类群落组成。结果表明,春末夏初,浮游细菌与藻类均呈现较高的多样性,浮游细菌DGGE图谱具有43种不同条带,浮游藻类的常见种有29种。浮游细菌群落聚类分析显示,丝藻（Ulothrix sp．）和微囊藻（Microcystis spp．）占优势时,浮游细菌群落基因组成存在明显差异。以藻类种群Shannon—Wiener多样性指数（Hp）,浮游藻类总细胞数（N）以及Microcystis spp．（M）百分含量为变量,典型对应分析（CCA）结果显示浮游细菌与浮游藻类群落结构变化的相关系数为30．9％,表明春末夏初太湖浮游细菌与浮游藻类群落演替具有较高的相关性。     

Variability of the microbial community in the western Antarctic Peninsula from late fall to spring during a low ice cover year

Although winter conditions play a major role in determining the productivity of the western Antarctic Peninsula (WAP) waters for the following spring and summer, a few studies have dealt with the seasonal variability of microorganisms in the WAP in winter. Moreover, because of regional warming, sea-ice retreat is happening earlier in spring, at the onset of the production season. In this context, this study describes the dynamics of the marine microbial community in the Melchior Archipelago (WAP) from fall to spring 2006. Samples were collected monthly to biweekly at four depths from the surface to the aphotic layer. The abundance and carbon content of bacteria, phytoplankton and microzooplankton were analyzed using flow cytometry and inverted microscopy, and bacterial richness was examined by PCR–DGGE. As expected, due to the extreme environmental conditions, the microbial community abundance and biomass were low in fall and winter. Bacterial abundance ranged from 1.2 to 2.8 × 10⁵ cells ml^?1 showing a slight increase in spring. Phytoplankton biomass was low and dominated by small cells (<2 μm) in fall and winter (average chlorophyll a concentration, Chl-a, of, respectively, 0.3 and 0.13 μg l^?1). Phytoplankton biomass increased in spring (Chl-a up to 1.13 μg l^?1), and, despite potentially adequate growth conditions, this rise was small and phytoplankton was still dominated by small cells (2–20 μm). In addition, the early disappearing of sea-ice in spring 2006 let the surface water exposed to ultraviolet B radiations (UVBR, 280–320 nm), which seemed to have a negative impact on the microbial community in surface waters.     

Evidence of heterotrophic prokaryotic activity limitation by nitrogen in the Western Arctic Ocean during summer

Global warming in the Arctic Ocean may result in changes to the stock and dynamics of nutrients that drive the activity of heterotrophic prokaryotes, a key component of the microbial food web. We performed 14 enrichment experiments during summer in the Beaufort and Chukchi Seas (Western Arctic Ocean), with C (acetate and/or glucose), N (nitrate and/or ammonium) and P (phosphate) amendments. In 8 out of 11 experiments performed with surface waters, prokaryotic heterotrophic production was limited by N, either alone (5 experiments) or in co-limitation with C (3 experiments). This contrasted with the experiments performed using waters from the chlorophyll maxima, where N was never limiting. Diversity analyses (DNA- and RNA-based fingerprinting) suggest that limitation was not restricted to specific operational taxonomic units but common to the different groups. This is the first report of N limitation of prokaryotic heterotrophic production in Arctic surface waters. This control by N may gain importance in future scenarios of higher productivity in the area.     

Relationship between bacterioplankton and phytoplankton community dynamics during late spring and early summer in Lake Taihu, China

The relationship between bacterioplankton and phytoplankton community compositions was investigated from April to June, 2005 with samples taken at five different stations in Lake Taihu, China. Bacterioplankton and phytoplankton community compositions as determined by denaturing gradient gel electrophoresis of polymerase chain reaction amplified bacterial 16S rRNA gene fragments (PCR-DGGE) and microscopic examination, respectively, revealed a high degree of diversity. In total, 43 unique bands were identified amongst the DGGE profiles, and 29 dominant phytoplankton populations were observed. The DGGE profiles were clustered into two distinct groups. These two clusters were closely associated with two dominant phytoplanktons, Ulothrix sp. and Microcystis spp., as observed on April 19, May 27 and June 27, 2005, respectively. The relationship between bacterioplankton and phytoplankton community compositions was investigated using Canonical Correspondence Analysis (CCA) with the Shannon-Wiener diversity index of phytoplankton community (Hp), the total cell abundance of phytoplankton (N) and the relative abundance of Microcystis spp. (M) as the variables. The CCA results indicated a 30.9 % correlation coefficient, suggesting a high degree of correlation between bacterioplankton and phytoplankton community compositions.     

Relationship between bacterioplankton and phytoplankton community dynamics during late spring and early summer in Lake Taihu, China

The relationship between bacterioplankton and phytoplankton community compositions was investigated from April to June, 2005 with samples taken at five different stations in Lake Taihu, China. Bacterioplankton and phytoplankton community compositions as determined by denaturing gradient gel electrophoresis of polymerase chain reaction amplified bacterial 16S rRNA gene fragments (PCR-DGGE) and microscopic examination, respectively, revealed a high degree of diversity. In total, 43 unique bands were identified amongst the DGGE profiles, and 29 dominant phytoplankton populations were observed. The DGGE profiles were clustered into two distinct groups. These two clusters were closely associated with two dominant phytoplanktons, Ulothrix sp. and Microcystis spp., as observed on April 19, May 27 and June 27, 2005, respectively. The relationship between bacterioplankton and phytoplankton community compositions was investigated using Canonical Correspondence Analysis (CCA) with the Shannon-Wiener diversity index of phytoplankton community (Hp), the total cell abundance of phytoplankton (N) and the relative abundance of Microcystis spp. (M) as the variables. The CCA results indicated a 30.9 % correlation coefficient, suggesting a high degree of correlation between bacterioplankton and phytoplankton community compositions.     

Arctic Ocean microbial community structure before and after the 2007 record sea ice minimum

Increasing global temperatures are having a profound impact in the Arctic, including the dramatic loss of multiyear sea ice in 2007 that has continued to the present. The majority of life in the Arctic is microbial and the consequences of climate-mediated changes on microbial marine food webs, which are responsible for biogeochemical cycling and support higher trophic levels, are unknown. We examined microbial communities over time by using high-throughput sequencing of microbial DNA collected between 2003 and 2010 from the subsurface chlorophyll maximum (SCM) layer of the Beaufort Sea (Canadian Arctic). We found that overall this layer has freshened and concentrations of nitrate, the limiting nutrient for photosynthetic production in Arctic seas, have decreased. We compared microbial communities from before and after the record September 2007 sea ice minimum and detected significant differences in communities from all three domains of life. In particular, there were significant changes in species composition of Eukarya, with ciliates becoming more common and heterotrophic marine stramenopiles (MASTs) accounting for a smaller proportion of sequences retrieved after 2007. Within the Archaea, Marine Group I Thaumarchaeota, which earlier represented up to 60% of the Archaea sequences in this layer, have declined to <10%. Bacterial communities overall were less diverse after 2007, with a significant decrease of the Bacteroidetes. These significant shifts suggest that the microbial food webs are sensitive to physical oceanographic changes such as those occurring in the Canadian Arctic over the past decade.     

Composition and community structure of pelagic copepods in the Indian sector of the Antarctic Ocean during the end of the austral summer

The present paper describes latitudinal and vertical changes in the composition, abundance and diversity of copepods in the Indian sector of the Antarctic Ocean, during the end of austral summer along a transect on 66°30′E between 43 and 62°S, within three layers (600–0, 200–0, 100–0 m). Highest copepod densities were noted in the central part of the transect, between the Antarctic Divergence and the Antarctic Convergence, with a maximum in the Antarctic Divergence zone, particularly in the upper levels of the water column. A total number of 80 copepod species were identified over the entire survey area. The south end and the central part of the transect comprised a small number of species. North of the Antarctic Convergence, this number increased markedly with the progressive disappearence of those species characteristic of Antarctic waters and their replacement by temperate and subtropical species. Generally, small copepods, particularly Oithona similis, Oithona frigida and Ctenocalanus citer, dominated in numbers in both Antarctic and sub-Antarctic areas. The contribution of large species to total copepod numbers was much lower, with Calanus simillimus in the central part of the transect, Pleuromamma borealis in the subtropical zone and Calanus propinquus in the southern part. Correspondence analysis showed a marked latitudinal gradient in population structure with four groups of samples and species corresponding to four latitudinal zones. Community structure (species richness, relative dominance index, evenness, Shannon species diversity index) and species abundance patterns (as rank-frequency diagrams) suggested that the maturity and species richness increased gradually from south to north. A low diversity index and evenness were observed in the area of the Antarctic Divergence, whereas the convergence zone showed high diversity and evenness. Conversely, the frontal zone showed high diversity and evenness. Distribution appeared unrelated to chlorophyll concentrations and on the large scale was related to the hydrologic characteristics. Received: 8 May 1996 / Accepted: 27 August 1996     

Phytoplankton community composition and photosynthetic physiology in the Australian sector of the Southern Ocean during the austral summer of 2010/2011

Phytoplankton population dynamics play an important role in biogeochemical cycles in the Southern Ocean during austral summer. However, the relationship between phytoplankton community composition and primary productivity remains elusive in this region. We investigated the community composition and photosynthetic physiology of surface phytoplankton assemblages in the Australian sector of the Southern Ocean from December 2010 to January 2011. There were significant latitudinal variations in hydrographic and biological parameters along 110°E and 140°E. Surface (5 m) chlorophyll a (chl a) concentrations measured with high-performance liquid chromatography varied between 0.18 and 0.99 mg m^?3. The diatom contribution to the surface chl a biomass increased in the south, as estimated with algal chemotaxonomic pigment markers, while the contributions of haptophytes and chlorophytes decreased. In our photosynthesis–irradiance (P–E) curve experiment, the maximum photosynthetic rate normalized to chl a ( \(P_{ \hbox{max} }^{*}\) ), initial slope (α ^*), the maximum quantum yield of carbon fixation (Φ _{c max}), and the photoinhibition index (β ^*) were higher in the region where diatoms contributed >50 % to the chl a biomass. In addition, there were statistically significant correlations between the diatom contribution to the chl a biomass and the P–E parameters. These results suggested that the changes in the phytoplankton community composition, primarily in diatoms, could strongly affect photosynthetic physiology in the Australian sector of the Southern Ocean.     

Photosynthetic oxygen production and community respiration in the Indian sector of the Antarctic Ocean during austral summer

Photosynthetic oxygen production by phytoplankton and community respiration in the Indian sector of the Antarctic Ocean were estimated from changes in oxygen concentrations in light and dark bottles. Gross production varied between 0.1 and 5.1 µmol O₂ l^-1 day^-1. In the same water, community respiration (the sum of oxygen consumption by heterotrophs and phytoplankton) was 0.4-3.6 µmol O₂ l^-1 day^-1, which accounted for 47-343% of the gross production. Algal and heterotrophic respirations were distinguished using some assumptions. These estimates showed that heterotrophic respiration accounted for most of the community respiration (70-91% depending upon the assumptions), indicating that heterotrophic respiration plays an important role in the mineralization of phytoplankton production in the surveyed sea area. Gross production rate correlated with chlorophyll a concentration, showing that the photosynthetic production rate of oxygen depends on the abundance of phytoplankton. Moreover, there was a significant relationship between gross production and community respiration rates. These regression equations suggested that negative net production occurred under the usually low concentration of chlorophyll observed in the Indian sector of the Antarctic Ocean. Hence, the net exchange of carbon dioxide due to biological processes through the sea surface seemed to be not as large as expected in the Antarctic Ocean, although the number of data were limited at this stage.     

The structure of the phytoplankton community in the subsurface chlorophyll maxima in the western North Pacific Ocean

The phytoplankton taxonomic composition of the subsurface chlorophyllmaximum layer (SCM) was compared with that of the surface layerin July, September and November 1979 in the western North PacificOcean. Besides the use of chemical fixatives for preservablephytoplankton, serial dilution culture method was employed fornon-preservable flagellates and monads, i.e., fragile forms.The SCM was characterized by a high species diversity of preservablephytoplankton and by the numerical dominance of fragile forms.Among the fragile forms, Micromonas and Ochromonas were dominant.This dominance is consistent with their viability at low lightintensity. Cluster analysis revealed that, for blue-green algae,coccolithophorids, silicoflagellates and diatoms, a marked differenceexisted in species assemblages between the SCM and the surfacebut there was no distinct difference in dinoflagellate assemblages.The difference between both layers is discussed, as relatedto the mechanisms of formation of the SCM. ¹Present address: Nodai Research Institute, Tokyo Universityof Agriculture, 1-1-1, Sakuragaoka, Setagaya-ku, Tokyo 156,Japan.     

The sub-ice fauna of the Laptev Sea and the adjacent Arctic Ocean in summer 1995

The sub-ice habitat and fauna in the Laptev Sea and the adjacent Arctic Ocean were investigated during the “Polarstern” cruise ARK XI/1 in summer 1995. At the ice-water interface a thin thermo- and halocline developed at many stations due to melting processes. In the lower centi- to decimetres of the ice, an accumulation of organic matter was found (particulate organic carbon: 1.9 mg l⁻¹, chl a: 3.3 μg l⁻¹) that may have provided a food source for the fauna. The water layer directly beneath the ice was inhabited by high numbers of various nauplii (130–23911 ind. m⁻³), and two ecological groups, the pelagic sub-ice fauna that originates from the surface water plankton, and the sympagic sub-ice fauna that migrates into this boundary layer from the ice interior. The pelagic fauna dominated the sub-ice community both in terms of species number and abundance. Both groups mainly comprised small copepods (e.g. Oithona similis, Oncaea borealis, Pseudocalanus spp., Halectinosoma spp., Tisbe spp.), but foraminifers and pteropods, for example, also occurred regularly. Diversity was generally low. Factors influencing the composition and abundance of the sub-ice fauna were most likely water depth, salinity and sea-ice sediments. Accepted: 6 July 1998     

The distribution of picoplankton and nanoplankton in Kongsfjorden,Svalbard during late summer 2006

Abundance and biomass of pico- (<2 μm) and nanoplankton (2–20 μm) were investigated in relation to hydrography in Kongsfjorden, Svalbard (79°N, 12°E) during late summer 2006. Autotrophic and heterotrophic picoplankton abundance ranged from 0.1 × 10⁶ to 35.2 × 10⁶ cells L⁻¹ and from 0.4 × 10⁶ to 20.3 × 10⁶ cells L⁻¹, respectively. The highest number of bacteria in the entire water column was recorded at station 2 at 10 m (22.3 × 10⁸ cells L⁻¹); the lowest concentration was observed at station 1 (6.0 × 10⁸ cells L⁻¹). The abundance of autotrophic and heterotrophic nanoplankton varied from 0.4 × 10⁵ cells L⁻¹ to 46 × 10⁵ cells L⁻¹ and from 0.3 × 10⁶ to 9.1 × 10⁶ cells L⁻¹, respectively. Our results demonstrated that heterotrophic nanoflagellates and bacteria in Kongsfjorden microbial community were relatively important. The structure of plankton communities integrated with environmental variables could act as indicators of the variability of the inflow of Atlantic Water into Kongsfjorden.     

Spatial distribution of aquatic marine fungi across the western Arctic and sub‐arctic

Fungi are important parasites of primary producers and nutrient cyclers in aquatic ecosystems. In the Pacific‐Arctic domain, fungal parasitism is linked to light intensities and algal stress that can elevate disease incidence on algae and reduce diatom concentrations. Fungi are vastly understudied in the marine realm and knowledge of their function is constrained by the current understanding of fungal distribution and drivers on global scales. To investigate the spatial distribution of fungi in the western Arctic and sub‐Arctic, we used high throughput methods to sequence 18S rRNA, cloned and sequenced 28S rRNA and microscopically counted chytrid‐infected diatoms. We identified a broad distribution of fungal taxa predominated by Chytridiomycota and Dikarya. Phylogenetic analysis of our Chytridiomycota clones placed Arctic marine fungi sister to the order Lobulomycetales. This clade of fungi predominated in fungal communities under ice with low snowpack. Microscopic examination of fixed seawater and sea ice samples revealed chytrids parasitizing diatoms collected across the Arctic that notably infected 25% of a single diatom species in the Bering Sea. The Pezizomycotina comprised > 95% of eukaryotic sequence reads in Greenland, providing preliminary evidence for osmotrophs being a substitute for algae as the base of food webs.     

The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes

Bacterial communities in the surface layer of the oceans consist of a few abundant phylotypes and many rare ones, most with unknown ecological functions and unclear roles in biogeochemical processes. To test hypotheses about relationships between abundant and rare phylotypes, we examined bacterial communities in the western Arctic Ocean using pyrosequence data of the V6 region of the 16S rRNA gene. Samples were collected from various locations in the Chukchi Sea, the Beaufort Sea and Franklin Bay in summer and winter. We found that bacterial communities differed between summer and winter at a few locations, but overall there was no significant difference between the two seasons in spite of large differences in biogeochemical properties. The sequence data suggested that abundant phylotypes remained abundant while rare phylotypes remained rare between the two seasons and among the Arctic regions examined here, arguing against the ‘seed bank’ hypothesis. Phylotype richness was calculated for various bacterial groups defined by sequence similarity or by phylogeny (phyla and proteobacterial classes). Abundant bacterial groups had higher within‐group diversity than rare groups, suggesting that the ecological success of a bacterial lineage depends on diversity rather than on the dominance of a few phylotypes. In these Arctic waters, in spite of dramatic variation in several biogeochemical properties, bacterial community structure was remarkably stable over time and among regions, and any variation was due to the abundant phylotypes rather than rare ones.