Common species affects the utility of non‐invasive genetic monitoring of a cryptic endangered mammal: The bridled nailtail wallaby

Non‐invasive methods of monitoring wild populations (such as genotyping faeces or hair) are now widely used and advocated. The potential advantages of such methods over traditional direct monitoring (such as live capture) are that accuracy improves because sampling of non‐trappable individuals may be possible, species in difficult and remote terrain can be surveyed more efficiently, and disturbance to animals is minimal. Few studies have assessed the effects of interactions between species on remote sampling success. We test the use of non‐invasive monitoring for the cryptic, forest‐dwelling, solitary and endangered bridled nailtail wallaby (Onychogalea fraenata) that is sympatric with the ecologically similar and more common black‐striped wallaby (Macropus dorsalis). Six types of hair traps were tested for 3668 trap days, and hairs were caught with about a 10% success rate. Camera traps showed that baited hair traps targeted both wallaby species. We microscopically identified hair as bridled nailtail wallaby or black‐striped wallaby. We compared these hairs and their genotypes (using seven microsatellite loci) with known bridled nailtail wallaby hairs and genotypes derived from animal trapping. Trapped bridled nailtail wallaby hairs had characteristics that could be mistaken for black‐stripe wallaby hairs; characteristics were not diagnostic. Genetic assignment tests consistently differentiated the known bridled nailtail wallaby samples from identified black‐striped wallaby samples, however genetic overlap between most of the microsatellite markers means that they are not suitable for species identification of single samples, with the possible exception of the microsatellite locus B151. With similar trapping effort and within the same area, live‐capture mark‐recapture techniques estimated 40–60 individuals and non‐invasive methods only detected 14 genotypes. A species‐specific genetic marker would allow more efficient targeting of bridled nailtail wallaby samples and increase capture rates.     

Effects of Prebaiting on Small Mammal Trapping Success in a Morrow's Honeysuckle-Dominated Area

Abstract: Researchers have obtained mixed results in studies that use prebaiting to enhance small mammal trapping success. In 2004–2005 we tested the effects of prebaiting on small mammal trapping success in an exotic and invasive shrub community, Morrow's honeysuckle (Lonicera morrowii), using 4 80 × 120-m live trapping grids at Fort Necessity National Battlefield in Fayette County, Pennsylvania, USA. We randomly assigned traps to 1 of 3 trapping methods: we prebaited one-third of the traps 2 nights (n = 3,508 trap-nights), one-third one night (n = 3,492 trap-nights), and one-third had no prebaiting (n = 3,509 trap-nights). We compared small mammal richness, diversity, and relative abundance (no. captures/100 trap-nights) of white-footed mice (Peromyscus leucopus; n = 462 captures), meadow voles (Microtus pennsylvanicus; n = 89 captures), meadow jumping mice (Zapus hudsonius; n = 221 captures), masked shrews (Sorex cinereus; n = 87 captures), and shorttail shrews (Blarina brevicauda; n = 78 captures) among prebaited traps and non-prebaited traps. On the first day of trapping, as well as all 4 days combined, richness, diversity, and relative abundance for all species were similar among traps that we had prebaited for 2 nights, one night, and zero nights (P = 0.856). Moreover, total number of captures was similar among prebaiting treatments (P = 0.197). These results suggest that prebaiting does not enhance trapping success for small mammals in a landscape dominated by a dense, exotic shrub. We recommend that managers do not employ prebaiting in areas with similar small mammal species composition in an attempt to increase trapping success, as we did not record a difference in trapping success in prebaited traps compared to non-prebaited traps.     

Distribution and coexistence of shrews in patchy landscapes: A field test of multiple hypotheses

Despite the important role of shrews (Soricomorpha: Soricidae) in the functioning of ecosystems, as predators and prey, the effects of habitat loss and fragmentation on this guild of mammals are still unclear. We studied the distribution of 5 species (the greater white toothed shrew Crocidura leucodon; the lesser white toothed shrew Crocidura suaveolens; the pigmy shrew Sorex minutus; the Appennine shrew Sorex samniticus and the Etruscan shrew Suncus etruscus) in a fragmented landscape in central Italy.Shrews were trapped with pitfall traps made from plastic water bottles, the number of traps increased with patch size. A total of 170 individuals, of 5 species of shrews were captured. Shrews were widely distributed in our study area, however patch occupancy was determined mainly by vegetation and geometrical characteristics of the patches. Our data supports the hypotheses that patterns of habitat selection and the dynamics of seasonal abundance (habitat and temporal partitioning between similarly sized species) reduce competitive pressure, thus allowing coexistence of shrews in relatively species-rich assemblages, for such small amounts of habitat. The most important outcome of our results is the crucial role played by vegetation structure in determining distribution patterns. These results strongly suggest that measurements of the vegetation structure of habitat patches should always be included as explanatory variables when studying the distribution of shrews in fragmented landscapes.     

A technique for using hair tubes beneath the snowpack to detect winter-active small mammals in the subnivean space

The study of winter-active small mammals beneath the snowpack has proved challenging for researchers because of the relative inaccessibility. We present a technique using hair tubes that permits the detection of small mammals active in the subnivean space. Hair tubes are cylindrical or funnel-shaped structures containing suitable bait and an adhesive surface that harvests hairs from small mammals as they attempt to reach the bait. Hair tubes eliminate many of the difficulties often associated with live trapping and permit the expansion of systematic sampling to larger scales than allowed by conventional live-trapping methods. The technique was used successfully to detect five small mammal species in the subnivean space in Kosciuszko National Park (KNP) in southeastern Australia. These included the common bush-rat, Rattus fuscipes; the dusky and agile antechinus, Antechinus swainsonii and A. agilis; the broad-toothed rat, Mastacomys fuscus; and the mountain pygmy possum, Burramys parvus. Although hair tubes have a number of limitations, such as not providing a measure of abundance or allowing the identification of individual animals, we believe that these limitations are balanced by the fact that the technique can be used at any spatial scale. Hair tubes are particularly suited to studies of animal distribution at the landscape-scale, because many hair tubes can be deployed and dispersed over large areas, and monitored on a regular basis by a small team of researchers. The technique also makes use of readily available, low-cost materials and could be easily adapted to a range of conditions and different target species.     

Will Environmental Stewardship enhance small mammal abundance on intensively managed farmland?

• 1 The creation of grassy field margins, as part of the UK Government's Environmental Stewardship (ES) scheme, is one of a number of measures proposed to mitigate the adverse effects of arable intensification on wildlife. Widespread development of these margins will potentially increase the amount of habitat available to small mammals in arable landscapes, as many species do not inhabit the cropped area.
• 2 The aim of this study was to determine what impact ES-type margins might have on small mammals. We compared small mammal abundance and biomass in spring and autumn on 3-m-wide and 6-m-wide grassy margins with that on conventionally managed field edges that have no margin (0 m wide) and are intensively cultivated to the field edge.
• 3 Bank voles Clethrionomys glareolus, wood mice Apodemus sylvaticus and common shrews Sorex araneus were the most abundant species; few field voles Microtus agrestis were captured on any margin. In autumn, bank vole and common shrew numbers were higher on the grassy margins than on conventional field edges, and margin width per se was positively associated with bank vole abundance. The number of wood mice captured did not differ among the different margin types.
• 4 Total small mammal biomass increased between spring and autumn on the 3-m- and 6-m-wide grassy margins, but decreased on the 0-m-wide margins. Total biomass in autumn was three times higher on 6-m-wide margins compared with the conventional arable field edges.

     

Distribution patterns and microhabitat segregation in gastrointestinal helminths of Sorex shrews

We studied the distribution patterns and microhabitat use in gastrointestinal helminths of the shrews Sorex araneus and S. caecutiens in Finland. The distribution of species prevalences was bimodal, and in S. araneus the abundance (mean intensity) was positively associated with commonness (prevalence), as assumed by the core-satellite species hypothesis (Hanski 1982). However, the positive correlation between prevalence and intensity was observed only when the effects of helminth body size and taxonomic group (cestodes vs nematodes) on intensity were controlled for. The nematodes of the genus Longistriata occurred predictably as core species, whereas the identity of the core cestodes was more variable between host species and regions. Helminth body size and taxonomic group were not related to the degree of aggregation in shrew populations, but helminth body size seemed to explain the differences in the distribution patterns of helminths between shrews and voles. The core species did not show more segregation in microhabitat use than randomly selected species. In fact, the two core nematodes showed largely overlapping intestinal distributions. We conclude that linear intestinal space is not a key resource for shrew nematodes, but it may be for shrew cestodes.     

Habitat occurrence and prey distribution of a multi-species community of shrews in the Siberian taiga

The habitat occurrence and invertebrate prey distribution of nine species of shrew in the mid-taiga of central Siberia were investigated. Species richness ranged from 4–9 shrews per habitat. Sorex araneus and S. caecutiens were numerically dominant in all seven habitats (44 and 36% of the total catch, respectively) while Sorex minutus, S. tundrensis, S. isodon , and S. roboratus each constituted 4–6% and Sorex minutissimus, S. daphaenodon , and Neomys fodiens were rare (< 1% each). There was no overall correlation between abundance of shrews and invertebrate prey, but flood-plain habitats supported the greatest abundance and species richness of shrews, and high density and biomass of prey. Oligochaete-eating shrews were twice as numerous here as in other habitats, coincident with high abundance of oligochaetes. The large, earthworm-feeding Sorex roboratus occurred only here. The more acid, typical taiga habitats had lower adundance and species richness of shrews. They had the lowest density and biomass of prey, particularly oligochaetes, and far fewer oligochaete-eating shrews. The relative paucity of shrews in bush-meadow habitats, despite abundant prey, implied that habitat structure influences shrew distribution. Differential numbers of certain species in the presence or absence of larger congeners also suggested that interspecific competitive effects influence habitat selection by shrews. The high species richness of shrews here in the mid-taiga may be accounted for by the heterogeneous nature of the constituent habitats which provide niches for small and large species of shrew with a range of feeding habits.     

The impact of forest ski-pistes on diversity of ground-dwelling arthropods and small mammals in the Alps

Forest clearing for winter sport activities is the major force driving loss and fragmentation of the alpine forests. The establishment of ski-pistes involves impacts on every ecosystem component. To assess the extent of this threat we studied ground-dwelling arthropods (namely ground beetles and spiders) and small mammals (shrews and voles) at two ski resorts in north-western Italian Alps by pitfall trapping. Diversity parameters (mean abundance, species richness and Shannon index) of spiders and macropterous carabids increased from forest interior to open habitats (i.e., ski-piste or pasture), whereas parameters of brachypterous carabids significantly decreased from forest interior to open habitats. Diversity parameters of macropterous ground beetles were higher on pastures than on ski-pistes. Small mammals were virtually absent from ski-pistes. Observed frequencies in the three adjacent habitats were significantly different from expected ones for the bank vole Myodes glareolus and the pygmy shrew Sorex minutus. Generalized linear models showed that abundance, species richness and diversity of spiders and macropterous carabids of ski-pistes were best modelled by combination of factors, including grass cover and width of the ski-piste. Indicator Species Analysis showed that species that significantly preferred ski-pistes were less than those preferring pastures, and species which were exclusive of ski-pistes were very few. To retain arthropod ground-dwelling fauna of open habitats environmentally friendly ways of constructing pistes should be developed. After tree clearing, only the roughest ground surfaces should be levelled, in order to preserve as much natural vegetation as possible. Where necessary, ski-pistes should be restored through the recovery of local vegetation.     

Robinia pseudoacacia as a surrogate for native tree species for saproxylic beetles inhabiting the riparian mixed forests of northern Italy

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Borrelia japonica in Nature: Genotypic Identification of Spirochetes Isolated from Japanese Small Mammals

Spirochetes were isolated from earlobe tissues of shrews (Sorex unguiculatus, Sorex caecutiens, and Crocidura dsinezumi), voles (Clethrionomys rufocanus), and mice (Apodemus argenteus and Apodemus speciosus) captured in various localities in Japan. The isolates were identified as Borrelia japonica by rRNA gene restriction fragment length polymorphism analysis. The data suggest that these small mammals are candidates of reservoir hosts for B. japonica.     

Does stigma curvature promote delayed selfing? An experimental investigation in Triodanis perfoliata (Campanulaceae)

• Self‐fertilisation that is delayed until after opportunities for outcrossing have ceased has been argued to provide both the reproductive assurance benefits of selfing and the genetic advantages of outcrossing. In the Campanulaceae, presentation of pollen on stylar hairs and progressive stigma curvature have been hypothesised to facilitate delayed selfing, but experimental tests are lacking. Stigma curvature is common in Campanula, a genus largely characterised by self‐incompatibility, and therefore is unlikely to have initially evolved to promote self‐fertilisation. In derived self‐compatible species, however, stigma curvature might serve the secondary function of delayed selfing.
• We investigated delayed selfing in Triodanis perfoliata, a self‐compatible relative of Campanula. Using floral manipulation experiments and pollen tube observations, we quantified the extent and timing of self‐pollination. Further, we hypothesised that, if stigma curvature provides the benefit of delayed selfing in Triodanis, selection should have favoured retention of self‐pollen through the loss of a stylar hair retraction mechanism.
• Results of a stigma removal experiment indicated that autonomous selfing produces partial seed set, but only some selfing was delayed. Pollen tube observations and a flower senescence assay also supported the finding of partial delayed selfing. Scanning electron microscopy revealed that pollen‐collecting hairs retract during anthesis, which may limit the extent of delayed selfing.
• Delayed selfing appeared to be only partially effective in T. perfoliata. The stylar hair retraction in this species would seem to contradict selection for selfing. We suggest that caution and rigour are needed in interpreting floral traits as adaptive mechanisms for delayed selfing.

     

Flooding ecology of voles, mice and shrews: the importance of geomorphological and vegetational heterogeneity in river floodplains

Since voles, mice and shrews are important animals in food chains of river floodplains, there is a need for data on their spatial and temporal distribution in periodically flooded areas. During a live trapping study between two successive floods in an embanked river floodplain, the ’Afferdensche en Deestsche Waarden (ADW)’, six species were frequently observed, viz,Microtus arvalis (Pallas, 1778),Clethrionomys glareolus (Schreber, 1780),Sorex araneus (Linnaeus, 1758),Crocidura russula (Hermann, 1780),Micromys minutus (Pallas, 1771) andApodemus sylvaticus (Linnaeus, 1758). Ungrazed rough herbaceous vegetation appeared to be rich in numbers and species, whereas no spoors of small mammals were observed in large parts of the ADW floodplain (eg bare substrates and maize fields). Vegetation structure seemed to be very important in guiding the recolonisation process after flood events. Throughout the year the highest numbers of small mammals were captured on and near the non-flooded elevated parts functioning as refugia during inundation. Poor habitat connectivity, sparseness of non-flooded recolonisation sources and small numbers of survivors led to slow recolonisation. The time between two successive floods (eight months) was not long enough for entire recolonisation of ADW. Small mammal densities at more than 30 m from the non-flooded areas were always lower than in non-flooded areas.     

Unique growth paths of heterospecific pollen tubes result in late entry into ovules in the gynoecium of Sagittaria (Alismataceae)

• Pollen‐pistil interactions are a fundamental process in the reproductive biology of angiosperms and play a particularly important role in maintaining incipient species that exist in sympatry. However, the majority of previous studies have focused on species with syncarpous gynoecia (fused carpels) and not those with apocarpous gynoecia (unfused carpels).
• In the present study, we investigated the growth of conspecific pollen tubes compared to heterospecific pollen tubes in Sagittaria species, which have apocarpous gynoecia. We conducted controlled pollinations between S. pygmaea and S. trifolia and observed the growth of conspecific and heterospecific pollen tubes under a fluorescence microscope.
• Heterospecific and conspecific pollen tubes arrived at locules within the ovaries near simultaneously. However, conspecific pollen tubes entered into the ovules directly, whereas heterospecific tubes passed through the carpel base and adjacent receptacle tissue, to ultimately fertilize other unfertilized ovules. This longer route taken by heterospecific pollen tubes therefore caused a delay in the time required to enter into the ovules. Furthermore, heterospecific pollen tubes displayed similar growth patterns at early and peak pollination. The growth pattern of heterospecific pollen tubes at late pollination was similar to that of conspecific pollen tubes at peak pollination.
• Heterospecific and conspecific pollen tubes took different routes to fertilize ovules. A delayed entry of heterospecific pollen into ovules may be a novel mechanism of conspecific pollen advantage (CPA) for apocarpous species.

     

Optimising sampling methods for small mammal communities in Neotropical rainforests

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Structure,ultrastructure and evolution of floral nectaries in the twinflower tribe Linnaeeae and related taxa (Caprifoliaceae)

Linnaeeae is a small tribe of Caprifoliaceae consisting of six genera and c. 20 species. In Linnaeeae, floral nectaries are located on the corolla‐filament‐tube and nectar is produced from unicellular glandular hairs. We studied 23 taxa using scanning electron microscopy (SEM), light microscopy (LM) and transmission electron microscopy (TEM) and found two distinct nectary morphologies, zonate and gibbous types, and two distinct types of glandular hair, clavate and smooth base types. Plesiomorphic characters associated with the nectary and identified in the tribe include hypocrateriform corollas, dichogamous flowers, zonate nectaries, wet papillate stigmas, vestigial nectary disc and smooth pollen grains. Apomorphic characters include bilabiate corollas, homogamous flowers, bulging nectaries, dry papillate stigmas and echinulate pollen grains. The nectary structure is similar in Vesalea and Linnaea and differs from the rest of the tribe, in accordance with recent phylogenetic results. Nectar secretion is typically granulocrine with subcuticular accumulation of nectar, which we compared with the secretion in multicellular hairs of Adoxa moschatellina. The cuticle on the hair becomes detached from the cell wall and large subcuticular spaces filled with nectar are formed. Nectar is probably released in areas with a thin cuticle. In Zabelia, the smooth basal part of the hair could help to build up the hydrostatic pressure.     

Evidence for echolocation in the common shrew, Sorex araneus

In this laboratory experiment it is shown that, like four North American soricid shrew species, the European common shrew Sorex araneus L. is able to use echolocation to identify open and closed tubes at a distance of 200 mm.
Three common shrews captured in Sweden were used for the experiments, which were carried out in darkness and within a sound-proof box. The experimental set-up eliminated orientation using sight, sound or scent from outside the experimental cage. Echolocation calls consisted of broadband ultrasonic clicks at low sound pressure. These were recorded using an ultrasound detector.
The ecological significance of echolocation in shrews is discussed. It is proposed that common shrews use echolocation to locate protective cover, thus minimizing the risk to be taken by, e.g. owls.
Echolocation may also be used for detecting obstacles in subterranean tunnels. Hence, echolocation could be of certain importance when abandoned burrows in the periphery of the tunnel system are restored during periods of increasing population densities. Since density peaks in most populations occur regularly each summer, and may reach extreme magnitudes in cyclic populations, the ecological significance of echolocation in shrews may be considerabl.     

Morphometric and pelage color variation of two sibling species of shrew (Mammalia: Soricomorpha)

Pelage color variants have been documented in some small mammals, but there is not any reported about coat color variation in shrews. Here, pelage color variants of the two sibling species (Sorex cylindricauda and Sorex bedfordiae) were uncovered in different sampling sites. Our data may initiate new interest to pelage color variants in small mammals. Furthermore, the classification of two striped shrews has been controversial for several decades. We conducted a detailed examination of the morphometric characters for the two sibling shrews. Significant differences between the two species morphologically confirmed the two-species classification status.     

New trapping method to survey for presence of the Etruscan shrew Suncus etruscus,the smallest mammal

The presence of the Etruscan shrew Suncus etruscus is hard to prove where its predator, the barn owl Tyto alba, is absent, because most live traps are not triggered by it. I therefore developed a new trapping method involving a feeding period of 1 week followed by one night of trapping using modified Trip Trap traps. I show here in detail how I caught four Etruscan shrews in 2010 with 24 traps in the Valley of Dora Baltea (Piemonte, Italy). In 2011, another 11 Etruscan shrews were caught in Piemonte and Lombardia, Italy, and Ticino, Switzerland. The proposed new method is useful for establishing the presence of the species.     

Analysis of biodiversity parameters of shrew communities of the Altai Mountains

The communities of insectivorous mammals of the Altai Mountains, each consisting of 4–9 species, are quite similar in species composition and principles of organization. The forest belt of mountains is dominated by the common shrew (Sorex araneus), with the Laxmann’s (Sorex caecutiens), lesser (Sorex minutus), and tundra (Sorex tundrensis) (rarely even-toothed (Sorex isodon)) shrews being codominants. With altitude, the dominants change and some species disappear but no significant changes in the dominance structure of the community occur. Positive correlations between abundance rates recorded in different years and on different plots indicate the stability of communities under study. Analysis of informational indices of diversity reveals four basic possible conditions of communities: a) relatively safe, b) slightly disturbed, c) disturbed, and d) high-altitude slightly evened.     

Piebaldism in tree shrews

Two types of hair changes occurred in an experimental group of captive tree shrews (Tupaia glis) living on an artificial diet in dark laboratory quarters. The most common variation in the fur consisted of a gradual type of hair loss resulting in a sparse coat and dry skin. The second type of hair change occurred in a female tree shrew in which patches of hair fell out all over the body. White hair regrowth followed exposure to sunlight, with subsequent repigmentation of the bases of the new hairs. Tree shrews suffering from the first type of hair disorder also improved when exposed to sunlight.