Macroalgae reduces survival of nursery‐reared Acropora corals in the Florida reef tract

Recent declines in coral populations along the Florida reef tract have prompted the establishment of coral restoration programs which raise coral species, such as the threatened Acropora cervicornis, in nurseries ready for outplanting. Large numbers of nursery‐reared coral colonies have been outplanted along the Florida reef tract in recent years, yet few studies have characterized benthic habitats that are considered optimal for colony survival. In 2016, we surveyed 23 A. cervicornis restoration sites, located at six different reefs in the upper Florida Keys. We examined the condition of the outplanted corals and quantified the benthic assemblages adjacent to the outplanted coral colonies. We found that where A. cervicornis survived for more than 1 year, the substrate significantly supported less brown macroalgae of the genus Dictyota than at sites where A. cervicornis had died. Coral survival was highest at sites with less than 15% Dictyota cover. These results suggest that the habitat conditions that supported Dictyota spp. were not conducive to A. cervicornis growth and survival. Restoration practitioners should avoid attaching nursery‐raised corals to substrate with Dictyota spp. cover greater than 15%.     

Restricted gene flow in the Caribbean staghorn coral Acropora cervicornis: implications for the recovery of endangered reefs

Coral reef conservation requires information about the distance over which healthy reefs can rescue damaged reefs through input of coral larvae. This information is desperately needed in the Caribbean where the 2 dominant shallow water corals Acropora cervicornis and Acropora palmata have suffered unprecedented declines. Here we compare the population genetic structure in the staghorn coral A. cervicornis across the greater Caribbean using DNA sequence data from 1 mitochondrial and 3 nuclear genes. Data from 160 individuals from 22 populations and 9 regions show that A. cervicornis exhibits significant population genetic structure across the greater Caribbean in both the mitochondrial (Phi(st) = 0.130) and nuclear data (Phi(st) = 0.067). The highest population structure was observed in the species' own, native mtDNA haplotypes (Phi(st) = 0.235). Introgressed alleles from A. palmata tempered higher population structure in A. cervicornis over regional scales but in some cases generated highly localized "introgression hot spots" and fine-scale genetic structure among reefs separated by as few as 2 km. These data show that larval dispersal over moderate or long distances (>500 km) is limited for this threatened species and in some cases locally limited as well. Thus, the endangered Caribbean staghorn corals require local source populations for their recovery and targeted conservation efforts over spatial scales much smaller than the hundreds to thousands of kilometers usually proposed for marine reserves.     

The evolution of narrow reef flats at high-latitude in the Ryukyu Islands

This paper describes a Holocene reef structure observed from a cutting in a modern reef on Okierabu Island in the Ryukyu Islands and proposes a process for the initiation and formation of narrow, lagoon-less fringing reef flats. Reef formation began around 7050 yBP at 11 m below present sea level. The reef was constructed by a uniform facies of in situ tabular corals and kept up with sea level rise. Geomorphological zonation has been restricted by the lack of a cross-reef energy gradient during reef formation. Sediment trapped by limestone caves abutting the shore has contributed to this characteristic. The slope break around-10 m and steep scarp of the shore create a narrow substrate that is responsible for the development of an equally narrow reef flat.     

Eocene fossil rodent assemblages from the Erlian Basin (Inner Mongolia,China): Biochronological implications

Rodents from the Nuhetingboerhe-Huheboerhe area in the Erlian Basin, Inner Mongolia, differ stratigraphically: primitive ctenodactyloids such as Chenomys and Yuanomys are dominant in the upper part of the Nomogen Formation; Tamquammys dominates in the Arshanto Formation; Asiomys, Pappocricetodon, and Yuomys appear in the lower part of the Irdin Manha Formation and Tamquammys is rarer in this formation than in the Arshanto Formation. The assemblage of the upper part of the Nomogen Formation is similar to that of the Lingcha Formation of Hunan, the Wutu Formation of Shandong, the Yuhuangding Formation of Hubei, and the Bumban Member of the Nara-Bulak Formation of Mongolia. The assemblage in the upper part of the Arshanto Formation is correlated with that from the locality Andarak 2 in Kyrgyzstan. The assemblage from the lower part of the Irdin Manha Formation resembles that of the lower part of the Hetaoyuan Formation of Henan.On the basis of the comparison of the rodent assemblages, I consider that the age of upper part of the Nomogen Formation corresponds to the Bumbanian land mammal age. The Bumbanian, Arshantan, and Irdinmanhan land mammal ages are correlated respectively to the early Ypresian, the middle–late Ypresian, and the early Lutetian of the Geological Time Scale. The Bumbanian and Irdinmanhan land mammal ages are also correlated to the early Wasatchian and the early Uintan (or the later Bridgerian) of the North American Land Mammal Ages.     

Macrobioerosion in Porites corals in subtropical northern South China Sea: a limiting factor for high-latitude reef framework development

Bioerosion is an important limiting factor in carbonate accretion and reef framework development; however, few studies have quantified the direct impact of macroborers on high-latitude coral communities, which are viewed as potential refuge during a period of global warming. In this study, internal macrobioerosion of Porites corals was examined at Daya Bay, subtropical northern South China Sea. The principal borers were the bivalve Lithophaga spp. and the sponges Cliona spp. and Cliothosa spp. (≥80 %), while sipunculid and polychaete worms and barnacles accounted for small amounts of bioerosion (≤20 %). Porites corals were heavily bioeroded in areas impacted by aquacultural and urban activities (10.34–27.55 %) compared with corals in relatively unpolluted areas (2.18–6.76 %). High levels of bioerosion, especially boring bivalve infestation, significantly weaken the corals and increase their susceptibility to dislodgement and fragmentation in typhoons, limiting accumulation of limestone framework. This study implies that carbonate accretion and reef development for high-latitude coral communities may be limited in future high-CO₂ and eutrophication-stressed environments.     

Neogene reef coral assemblages of the Bocas del Toro region, Panama: the rise of Acropora palmata

Temporal patterns are evaluated in Neogene reef coral assemblages from the Bocas del Toro Basin of Panama in order to understand how reef ecosystems respond to long-term environmental change. Analyses are based on a total of 1,702 zooxanthellate coral specimens collected from six coral-bearing units ranging in age from the earliest Late Miocene to the Early Pleistocene: (1) Valiente Formation (12–11 Ma), (2) Fish Hole Member of the Old Bank Formation (5.8–5.6 Ma), (3) La Gruta Member of the Isla Colon Formation (2.2–1.4 Ma), (4) Ground Creek Member of the Isla Colon Formation (2.2–1.4 Ma), (5) Mimitimbi Member of the Urracá Formation (1.2–0.8 Ma), and (6) Hill Point Member of the Urracá Formation (1.2–0.8 Ma). Over 100 coral species occur in the six units, with faunal assemblages ranging from less than 10% extant taxa (Valiente Formation) to over 85% extant taxa (Ground Creek Member). The collections provide new temporal constraints on the emergence of modern Caribbean reefs, with the La Gruta Member containing the earliest occurrence of large monospecific stands of the dominant Caribbean reef coral Acropora palmata, and the Urracá Formation containing the last fossil occurrences of 15 regionally extinct taxa. Canonical correspondence analysis of 41 Late Miocene to Recent reef coral assemblages from the Caribbean region suggests changes in community structure coincident with effective oceanic closure of the Central American Seaway (~3.5 Ma). These changes, including increased Acropora dominance, may have contributed to a protracted period of elevated extinction debt prior to the major peak in regional coral extinctions (~2–1 Ma).     

Spatial patterns and ecology of benthic communities on a high-latitude South Florida (Broward County,USA) reef system

High-latitude reef communities consisting of typical Caribbean fauna of variable composition and density exist on four parallel ridges at varying depths along the Broward County (Florida, USA) coast. Two of these ridges, at 7–13 and 15–30 m in depth, are drowned early Holocene coral reefs of 5 and 7 ky uncorrected radiocarbon age. In this study, community data were collected on each reef using 50-m, line-intercept transects. Using multivariate non-metric statistics, the data show distinct differences in benthic community structure across several spatial gradients. Diversity indices revealed that while all values were low, species diversity (H) was consistent throughout the county, and species richness (d) and evenness (J) increased along a north-south gradient. Scleractinian coral (27 species) cover was low (<6%) in all areas, and Montastrea cavernosa dominated as the major hermatypic scleractinian. Notably absent was the major Caribbean reef-builder Acropora palmata. A rich alcyonacean fauna was present on all studied reefs, and these were typically the most important faunal group determining community structure. Although during the 2-year period 2000–2002 mean water temperatures never fell below 20 °C, scleractinia were small in size.     

Conservation of reef corals in the South China Sea based on species and evolutionary diversity

The South China Sea in the Central Indo-Pacific is a large semi-enclosed marine region that supports an extraordinary diversity of coral reef organisms (including stony corals), which varies spatially across the region. While one-third of the world’s reef corals are known to face heightened extinction risk from global climate and local impacts, prospects for the coral fauna in the South China Sea region amidst these threats remain poorly understood. In this study, we analyse coral species richness, rarity, and phylogenetic diversity among 16 reef areas in the region to estimate changes in species and evolutionary diversity during projected anthropogenic extinctions. Our results show that richness, rarity, and phylogenetic diversity differ considerably among reef areas in the region, and that their outcomes following projected extinctions cannot be predicted by species diversity alone. Although relative rarity and threat levels are high in species-rich areas such as West Malaysia and the Philippines, areas with fewer species such as northern Vietnam and Paracel Islands stand to lose disproportionately large amounts of phylogenetic diversity. Our study quantifies various biodiversity components of each reef area to inform conservation planners and better direct sparse resources to areas where they are needed most. It also provides a critical biological foundation for targeting reefs that should be included in a regional network of marine protected areas in the South China Sea.     

Large-scale patterns in morphological diversity and species assemblages in Neotropical Triatominae (Heteroptera: Reduviidae)

We analysed the spatial variation in morphological diversity (MDiv) and species richness (SR) for 91 species of Neotropical Triatominae to determine the ecological relationships between SR and MDiv and to explore the roles that climate, productivity, environmental heterogeneity and the presence of biomes and rivers may play in the structuring of species assemblages. For each 110 km x 110 km-cell on a grid map of America, we determined the number of species (SR) and estimated the mean Gower index (MDiv) based on 12 morphological attributes. We performed bootstrapping analyses of species assemblages to identify whether those assemblages were more similar or dissimilar in their morphology than expected by chance. We applied a multi-model selection procedure and spatial explicit analyses to account for the association of diversity-environment relationships. MDiv and SR both showed a latitudinal gradient, although each peaked at different locations and were thus not strictly spatially congruent. SR decreased with temperature variability and MDiv increased with mean temperature, suggesting a predominant role for ambient energy in determining Triatominae diversity. Species that were more similar than expected by chance co-occurred near the limits of the Triatominae distribution in association with changes in environmental variables. Environmental filtering may underlie the structuring of species assemblages near their distributional limits.     

Pathology of tissue loss (white syndrome) in Acropora sp. corals from the Central Pacific

We performed histological examination of 69 samples of Acropora sp. manifesting different types of tissue loss (Acropora White Syndrome-AWS) from Hawaii, Johnston Atoll and American Samoa between 2002 and 2006. Gross lesions of tissue loss were observed and classified as diffuse acute, diffuse subacute, and focal to multifocal acute to subacute. Corals with acute tissue loss manifested microscopic evidence of necrosis sometimes associated with ciliates, helminths, fungi, algae, sponges, or cyanobacteria whereas those with subacute tissue loss manifested mainly wound repair. Gross lesions of AWS have multiple different changes at the microscopic level some of which involve various microorganisms and metazoa. Elucidating this disease will require, among other things, monitoring lesions over time to determine the pathogenesis of AWS and the potential role of tissue-associated microorganisms in the genesis of tissue loss. Attempts to experimentally induce AWS should include microscopic examination of tissues to ensure that potentially causative microorganisms associated with gross lesion are not overlooked.     

Seedling diversity in Hydatellaceae: implications for the evolution of angiosperm cotyledons

BACKGROUND AND AIMS: Cotyledon number has long been a primary morphological feature distinguishing monocots from other angiosperms. Recent placement of Hydatellaceae near the early-divergent angiosperm order Nymphaeales, rather than in the monocot order Poales, has prompted reassessment of seedling morphology in this poorly known family. METHODS: Seedlings of six species representing all eco-geographical groups of Hydatellaceae are described using light and scanning electron microscopy. KEY RESULTS: Two seedling types were discovered. Material examined of Trithuria submersa, T. bibracteata, T. austinensis and T. filamentosa possess a transparent bilobed sheathing structure that surrounds the main axis below the first foliage leaf. The seed coat is attached to the sheathing structure. Seedlings of Trithuria lanterna and T. konkanensis lack a sheathing structure, and the seed coat is attached to a short, narrow lateral outgrowth on the main axis of the seedling. CONCLUSIONS: The sheathing structure that is present in seedlings of some Hydatellaceae could be homologized with the two united cotyledons of water lilies. It also resembles the single cotyledon of some monocots, and hence demonstrates a possible pathway of the origin of a monocot-like embryo, though no homology is implied. The sheathing structure is reduced in Trithuria lanterna and T. konkanensis, and the short, narrow outgrowth of its seedling could represent a single cotyledon. This synapomorphy suggests that the only Indian species of Hydatellaceae, T. konkanensis, is closer to the northern Australian T. lanterna than to the south-western Australian T. bibracteata.     

Assessing abundance and diversity patterns of soil microarthropod assemblages in northern Victoria Land (Antarctica)

This study aimed to: (1) assess differences between two quantitative sampling methods of soil microarthropods (visual census vs. stone washing) in ice-free areas located along a latitudinal gradient (from 72°37′S to 74°42′S) in northern Victoria Land (Antarctica); (2) furnish preliminary results on the abundance and diversity of mites and springtails in the studied areas. Visual census yielded reliable density estimates for adult collembolans and larger prostigmatic mites but did not detect small species. The study updates the distribution of several mites, including the southernmost record of an Oribatida species at global scale. Species composition was correlated with latitude but the uneven abundance distribution and local high beta-diversity probably reflect habitat fragmentation and population isolation. Under this circumstance nested sampling design should be usefully employed. Priorities and suitable methods for studying terrestrial microarthropod communities in continental Antarctica are discussed.     

Soft body reconstructions of Palaeozoic corals: implications for the system of Anthozoa (Coelenterata)

The soft bodies and individual developmental sequences of the polyps of Palaeozoic corals are reconstructed on the basis of the functional, engineering and constructional morphology of Recent Anthozoa. Four types of body construction can be distinguished by the arrangement of mesenteries, the number of mesentery insertion zones and characteristic septal insertion patterns: (1) serial insertion of single mesenteries in four sectors, which has resulted in the serial insertion of septa, (2) symmetrical insertion of single mesenteries in four sectors, which has resulted in a symmetrical septal pattern or pseudo radial septal patterns, (3) exponential insertion of paired mesenteries in four sectors, which has resulted in septa bifurcation, and (4) exponential insertion of paired mesenteries in six sectors, which has resulted in a radial septal pattern. Suggestions for a constructional taxonomy are given on the basis of the arrangement of mesenteries and on individual development of the reconstructed polyps. Accordingly, new superorders are introduced: 'Seriales' for the first body construction and 'Symmetricales' for the second. The third body construction is that of the Heterocorallia and the fourth that of the Hexacorallia. Following a constructional taxonomy, new and stricter definitions are given for the new and already known taxonomic categories of Rugosa, Heterocorallia and Hexacorallia. A byproduct of this re-definition is that several Palaeozoic corals represent the body construction of the Hexacorallia and should therefore be revised as Hexacorallia; consequently, Hexacorallia must already have been present in the Palaeozoic.     

Alveolina-dominated assemblages in the early Eocene carbonates of Jaintia Hills,NE India: Biostratigraphic and palaeoenvironmental implications

Larger benthic foraminifera (LBF) are significant proxies in biostratigraphy and also act as excellent indicators of shallow-marine carbonate environments in fossil series. The Palaeogene LBF recorded from Meghalaya, NE India (eastern part of the relic eastern Tethys/Neo-Tethys) have high potential for dating shallow-marine sediments and documenting the multiple episodes of carbonate sedimentation that have contributed to the development of the Sylhet Limestone Group. Early Eocene witnessed the proliferation of LBF species worldwide, the phenomenon better known as the Larger Foraminiferal Turnover (LFT). Genera like Alveolina, Nummulites and Orbitolites with broad species complexes thrived as the dominant LBF amidst numerous other taxa on the verge of extinction or only surviving as stable forms. The current study emphasizes on the biostratigraphic and palaeoenvironmental account of the early Eocene Umlatdoh Limestone successions outcropping in the Jaintia Hills of Meghalaya, primarily based on the recorded species of Alveolina and other larger benthic foraminifera. Five species of Alveolina — A. oblonga, A. schwageri, A. cf. ruetimeyeri, A. aff. haymanensis and A. aff. varians are recorded in the evaluated sections that indicate an early Eocene age corresponding to the Shallow Benthic Zone 10. Major carbonate facies types in the present assessment include oolitic-smaller benthic foraminiferal -green algal grainstone–packstone, smaller miliolid-Alveolina grainstone, green algal-benthic foraminiferal grainstone, larger porcellaneous (Alveolina) grainstone-packstone, Alveolina-nummulitid grainstone-rudstone, and nummulitid grainstone-rudstone, which indicate a shallow marine, high-energy depositional environment ranging from shoal-sandy bars to a distal inner ramp setting.     

Patterns of diversity for aphidiine (Hymenoptera: Braconidae) parasitoid assemblages on aphids (Homoptera)

We used aphids (Aphidae) as a representative hemimetabolous host family to investigate patterns of parasitoid (Aphidiine) assemblage size. The aphidiine assemblages from 477 aphid species were used to estimate average assemblage size and the influence of eight ecological and taxonomic variables. Aphids species support an average of 1.7 aphidiine species. Aphid subfamily and invasion status (native or exotic) were the most important determinants of parasitoid richness, explaining 28% of the deviance in aphidiine assemblage size. Aphids within the largest aphid subfamily, the Aphidinae, support larger parasitoid assemblages than those in other subfamilies. Parasitoid diversity was also highest on exotic aphid hosts (within the Aphidinae) and on hosts in developed habitats (agricultural or urban), though the latter effect is weak. Patterns related to aphid food plant architecture were influenced by an interaction with aphid invasion status; parasitoid diversity drops with increasing architectural complexity on exotic aphids, whereas the diversities on native aphid hosts are similar on different plant types. Weak effects were also found for aphid food plant alternation (whether or not aphids switch hosts seasonally) and climate (annual range in temperature); alternating aphids support more parasitoids than non-alternating hosts, and parasitoid assemblage size is lowest in warm climates. Taxonomic isolation of aphids at the generic level showed no significant relationship with parasitoid diversity. Finally, in contrast to parasitoid assemblages on holometabolous hosts, sample size effects were weak for aphids, possibly due to the narrow host ranges of aphidiines. Received: 22 November 1997 / Accepted: 7 March 1998     

Crystallographic orientations of structural elements in skeletons of Syringoporicae (tabulate corals,Carboniferous): implications for biomineralization processes in Palaeozoic corals

The crystallographic orientation of structural elements in skeletons of representatives of Carboniferous Syringoporicae (Auloporida) has been analysed by scanning electron microscopy (SEM), petrographic microscopy and electron backscatter diffraction (EBSD) on specimens from the Iberian Peninsula. The skeletons of the tabulate corals of the Syringoporicae consist of biogenic calcite crystals, and their microstructure is composed of lamellae, fibres and granules, or of a combination of these. Independent of the microstructure, the c‐axis is oriented towards the lumen, quasi‐perpendicular to the growth direction of the skeleton (perpendicular to the morphological axis lamellae, parallel to fibres). Most phaceloid taxa have a turbostratic distribution, as a biogenic response to prevent the cleavage of crystals. Cerioid and some phaceloid corals, whose microstructure is conditioned by wall elements, do not exhibit turbostratic distribution. Wall elements are determined by the biology of each taxon. Holacanth septal spines are composed of fibres arranged in a cone‐shape structure, sometimes clamped to the external part of the corallite and show a complex crystallography. Monacanth septal spines are spindle shaped and composed of bundles of fibres. Tabulae are composed of lamellae. Their development and crystallographic orientation depends on the position of the epithelium in each case. Shared walls are formed by a combination of the walls of two independent corallites with a median lamina, composed of granules; these have a crystallographic orientation between that of the two corallites. The growth of the microstructure is derived by a coordinated stepping mode of growth, similar to other groups of organisms such as molluscs and scleractinians. The nucleation and formation of packages of co‐oriented microcrystals suggest a growth mode similar to mineral bridges with a competitive growth mode between each crystal. The growth pattern of corallites suggests that the growth direction is divided into two main components: a horizontal growth direction towards the lumen and a vertical direction towards the top.     

Geographic and habitat partitioning of genetically distinct zooxanthellae (Symbiodinium) in Acropora corals on the Great Barrier Reef

Intra- and intercolony diversity and distribution of zooxanthellae in acroporid corals is largely uncharted. In this study, two molecular methods were applied to determine the distribution of zooxanthellae in the branching corals Acropora tenuis and A. valida at several reef locations in the central section of the Great Barrier Reef. Sun-exposed and shaded parts of all colonies were examined. Single-stranded conformational polymorphism analysis showed that individual colonies of A. tenuis at two locations harbour two strains of Symbiodinium belonging to clade C (C1 and C2), whereas conspecific colonies at two other reefs harboured a single zooxanthella strain. A. valida was found to simultaneously harbour strains belonging to two distinct phylogenetic clades (C and D) at all locations sampled. A novel method with improved sensitivity (quantitative polymerase chain reaction using Taqman fluorogenic probes) was used to map the relative abundance distribution of the two zooxanthella clades. At two of the five sampling locations both coral species were collected. At these two locations, composition of the zooxanthella communities showed the same pattern in both coral species, i.e. correlation with ambient light in Pioneer Bay and an absence thereof in Nelly Bay. The results show that the distribution of genetically distinct zooxanthellae is correlated with light regime and possibly temperature in some (but not all) colonies of A. tenuis and A. valida and at some reef locations, which we interpret as acclimation to local environmental conditions.     

Patterns of Symbiodinium (Dinophyceae) diversity and assemblages among diverse hosts and the coral reef environment of Lizard Island,Australia

Large‐scale environmental disturbances may impact both partners in coral host–Symbiodinium systems. Elucidation of the assembly patterns in such complex and interdependent communities may enable better prediction of environmental impacts across coral reef ecosystems. In this study, we investigated how the community composition and diversity of dinoflagellate symbionts in the genus Symbiodinium were distributed among 12 host species from six taxonomic orders (Actinaria, Alcyonacea, Miliolida, Porifera, Rhizostoma, Scleractinia) and in the reef water and sediments at Lizard Island, Great Barrier Reef before the 3rd Global Coral Bleaching Event. 454 pyrosequencing of the ITS2 region of Symbiodinium yielded 83 operational taxonomic units (OTUs) at a 97% similarity cut‐off. Approximately half of the Symbiodinium OTUs from reef water or sediments were also present in symbio. OTUs belonged to six clades (A‐D, F‐G), but community structure was uneven. The two most abundant OTUs (100% matches to types C1 and A3) comprised 91% of reads and OTU C1 was shared by all species. However, sequence‐based analysis of these dominant OTUs revealed host species specificity, suggesting that genetic similarity cut‐offs of Symbiodinium ITS2 data sets need careful evaluation. Of the less abundant OTUs, roughly half occurred at only one site or in one species and the background Symbiodinium communities were distinct between individual samples. We conclude that sampling multiple host taxa with differing life history traits will be critical to fully understand the symbiont diversity of a given system and to predict coral ecosystem responses to environmental change and disturbance considering the differential stress response of the taxa within.