Genome sizes of cyclopoid copepods (Crustacea): evidence of evolutionary constraint

Genome sizes for 36 species of cyclopoid copepods were determined by DNA-Feulgen cytophotometry of nuclei from adults collected from diverse habitats and locales in North America, South America, Europe, and Asia. Genome sizes are small, show a 20-fold range ( C  = 0.10–2.02 pg DNA), and vary in a discontinuous fashion. The genomes of cyclopoid copepods are remarkably small and constant within each species, unlike the large and variable genomes of marine calanoid species. These differences may reflect the evolutionary antiquity of marine copepods in relation to marine, brackish, and freshwater copepods, as well as differences in mechanisms used to modulate genome size. The small genome sizes of contemporary cyclopoids provide substantive evidence of evolutionary constraint, possibly favouring small genomes, rapid replication rates and accelerated development as adaptive strategies for survival in often fragmented, stressful, and changing habitats. © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 87 , 625–635.     

Evolutionary and ecological implications of genome size in the North American endemic sagebrushes and allies (Artemisia, Asteraceae)

The genome size of 51 populations of 20 species of the North American endemic sagebrushes (subgenus Tridentatae ), related species, and some hybrid taxa were assessed by flow cytometry, and were analysed in a phylogenetic framework. Results were similar for most Tridentatae species, with the exception of three taxonomically conflictive species:  Artemisia bigelovii Gray,  Artemisia pygmaea Gray, and  Artemisia rigida Gray. Genome size homogeneity (together with the high morphological, chemical, and karyological affinities, as well as low DNA sequence divergence) could support a recent diversification process in this geographically restricted group, thought to be built upon a reticulate evolutionary framework. The Tridentatae and the other North American endemic Artemisia show a significantly higher genome size compared with the other subgenera. Our comparative analyses including genome size results, together with different kinds of ecological and morphological traits, suggest an evolutionary change in lifestyle strategy linked to genome expansion, in which junk or selfish DNA accumulation might be involved. Conversely, weed or invasive behaviour in Artemisia is coupled with lower genome sizes. Data for both homoploid and polyploid hybrids were also assessed. Genome sizes are close to the expected mean of parental species for homoploid hybrids, but are lower than expected in the allopolyploids, a phenomenon previously documented to be related with polyploidy.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 631–649.     

Genome size evolution and polyploidy in the Daphnia pulex complex (Cladocera: Daphniidae)

Genome size was estimated in 49 clones of the Daphnia pulex complex from temperate and subarctic locations using flow cytometry and microsatellite DNA analyses. Significant genome size differences were found in diploid species belonging to the two genetically distinct groups (the pulicaria and the tenebrosa groups), with clones from the tenebrosa group having genome sizes 22% larger than those in the pulicaria group. Combined flow cytometry and microsatellite DNA analyses revealed that nearly all polyploid clones in the D. pulex complex are triploid and not tetraploid, as was previously suggested. Sequencing analyses of the ND5 gene to position clones in their respective clades within the D. pulex complex have uncovered three triploid clones of Daphnia middendorffiana with a D. pulex maternal parent. This result was unexpected because Daphnia pulicaria has always been identified as the maternal parent of these hybrid polyploid clones. Triploid clones likely owe their origins to interactions between sexual and asexual populations. Further interactions in the tenebrosa group have generated tetraploid clones but these events have been rare.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 97 , 68–79.     

Size dimorphism in Rankinia [Tympanocryptis] diemensis (Family Agamidae): sex-specific patterns and geographic variation

Sexual dimorphism has implications for a range of biological and ecological factors, and intersexual morphological differences within a species provide an ideal opportunity for investigating evolutionary influences on phenotypic variation. We investigated sexual size dimorphism (SSD) in an agamid species, Rankinia [Tympanocryptis] diemensis , to determine whether overall size and/or relative morphological trait size differences exist and whether geographic variation in size dimorphism occurs in this species. Relative morphological trait proportions included a range of head, limb, and inter-limb measurements. We found significant overall intersexual adult size differences; females were the larger sex across all sites but the degree of dimorphism between the sexes did not differ between sites. This female-biased size difference is atypical for agamid lizards, which are usually characterized by large male body size. In this species, large female-biased SSD appears to have evolved as a result of fecundity advantages. The size of relative morphological trait also differed significantly between the sexes, but in the opposite direction: relative head, tail, and limb sizes were significantly larger in males than females. This corresponds to patterns in trait size usually found in this taxonomic group, where male head and limb size is important in contest success such as male–male rivalry. There were site-specific morphological differences in hatchlings, including overall body size, tail, inter-limb, thigh, and hindlimb lengths; however, there were no sex-specific differences indicating the body size differences present in the adult form occur during ontogeny.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 699–709.     

中国洞穴甲壳动物多样性及其对洞穴环境的适应性

简要阐述了洞穴环境的研究现状以及洞穴动物的生态特征,初步探讨了中国洞穴甲壳动物的形成过程、多样性、地理分布以及对洞穴环境的适应性。截止到2008年10月,我国已记录的洞穴甲壳动物(主要指十足目虾类和端足目钩虾类)共有33种,分别隶属6科10属,主要分布在贵州省、广西省等喀斯特洞穴密集地区。洞穴甲壳动物由于长期生活在洞穴的黑暗带,食物匮乏,水温恒定,CO2浓度过高,且O2浓度相对较少的环境中,其在形态结构、消化系统、生理及行为等方面逐渐表现出与地表甲壳动物不同的适应性特征。如:眼缺失、体无色、触角和附肢显著增长、新陈代谢减慢、代谢率小,昼夜节律降低,不能调节体温,生活步调放慢,寿命长,发育周期长等。     

Variation across amphibian species in the size of the nuclear genome supports a pluralistic, hierarchical approach to the C-value enigma

Amphibians have featured prominently in discussions of the C-value enigma, the still-unresolved puzzle regarding the evolution of genome size. Their wide range in nuclear DNA contents and diverse ecological and developmental lifestyles make them excellent subjects for addressing the key elements of the C-value enigma. However, in some cases the importance of work on amphibians appears to be overstated. This is especially true of claims that patterns of variation in salamanders support a particular theory of genome size evolution to the exclusion of others. This study provides a critical re-examination of some of these claims, as well as an investigation of the relationships between genome size, cell and nuclear size, and metabolism in amphibians. The results of these analyses, combined with an overview of previous amphibian genome size literature, strongly indicate the need for a pluralistic approach to the C-value enigma. In particular, it must be recognized that evolutionary forces operating and interacting at several levels of biological organization (of which the genome itself is one) are responsible for the observed patterns in amphibian genome size distributions.  © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 79 , 329–339.     

Complex trait differentiation between host-populations of the pea aphid Acyrthosiphon pisum (Harris): implications for the evolution of ecological specialisation

Variation in traits affecting preference for, and performance on, new habitats is a key factor in the initiation of ecological specialisation and adaptive speciation. However, habitat and resource use also involves other traits whose influence on ecological and genetic divergence remains poorly understood. In the present study, we investigated the extent of variation of life-history traits among sympatric populations of the pea aphid Acyrthosiphon pisum , which shows several host races that are specialised on various plants of the family Fabaceae plants and is an established model for ecological speciation. First, we assessed the community structure of microbial partners within host populations of the pea aphid. The effect of these microbes on host fitness is uncertain, although there is growing evidence that they may modulate various important adaptive traits of their host such as plant utilisation and resistance against natural enemies. Second, we performed a multivariate analysis on several ecologically relevant features of host populations recorded in the present and previous studies (including microbial composition, colour morph, reproductive mode, and male dispersal phenotype), enabling the identification of correlations between phenotypic traits. We discuss the ecological significance of these associations of traits in relation to the habitat characteristics of pea aphid populations, and their consequences for the evolution of ecological specialisation and sympatric speciation.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 97 , 718–727.     

Parasites may contribute to 'magic trait' evolution in the adaptive radiation of three-spined sticklebacks, Gasterosteus aculeatus (Gasterosteiformes: Gasterosteidae)

In the past decade, there has been a new effort to understand the ecology that drives population divergence and speciation. It is well established in theory that speciation is most likely to occur when a trait that is under divergent natural selection in different populations is also used in mate choice. Such traits have been dubbed 'magic traits' ( Gavrilets, 2004 ) and, although there appears to be good evidence that they exist, the ecological mechanisms that underlie their divergence are not well understood. Size at maturity in three-spined sticklebacks is an archetypal example of a magic trait. The present study documents for the first time that differences in body size at maturity in sympatric species pairs of lacustrine three-spined sticklebacks in British Columbia, Canada, are caused by differences in age at maturity. It is also shown that there are differences between the sympatric species in the patterns of infection with a virulent cestode, Schistocephalus solidus . Although the evidence is circumstantial, these differences in infection are consistent with the hypothesis that they have contributed to the observed divergence in age and size at maturity in these populations.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 96 , 425–433.     

The Cladocera (Crustacea: Branchiopoda) as a relict group

According to the fossil record and DNA data, the Cladocera is an ancient crustacean group. Recent revisions make their taxonomy amenable to zoogeographical analysis. A bipolar (antitropical) disjunct distribution of faunal complexes and taxa ( Daphnia , Daphniopsis , Pleuroxus , Tretocephala , etc.), the wide ranges of some species and narrow restriction of others, the presence of isolated populations and the concentration of endemics in the warm temperate – subtropical zone of both hemispheres are traits of cladoceran zoogeography. These enable us to compare them with better studied (both living and fossil) plants, invertebrates and vertebrates, and to analyse their faunal formation by the modern version of the concept of 'ejected relicts' instead of vicariance. This reveals the extant Cladocera as a relict group, whose taxa were widely distributed in the past. Tertiary climatic changes, primarily within the present tropical and boreal latitudes, resulted in mass extinction of their biotas, while the warm temperate – subtropical regions remained comparatively unchanged. Although most recent Cladocera have relict status, others such as the D. pulex and D. longispina species groups and the subgenus Eubosmina are evolutionary young and show recent speciation.  © 2006 The Linnean Society of London, Zoological Journal of the Linnean Society , 2006, 147 , 109–124.     

Physiological variation along a geographical gradient: is growth rate correlated with routine metabolic rate in Rana temporaria tadpoles?

Shorter season length and lower temperature towards higher latitudes and altitudes often select for intraspecific clines in development and growth rates. However, the physiological mechanisms enabling these clines are not well understood. We studied the relationship between routine metabolic rate (RMR) and larval life-history traits along a 1500-km latitudinal gradient across Sweden. In a laboratory common garden experiment, we exposed eight common frog Rana temporaria populations to two experimental temperatures (15 and 18 °C) and measured RMR using flow-through respirometry. We found significant differences among populations in RMR, but there was no evidence for a linear relationship between latitude and RMR in either temperature treatment. However, we found a concave relationship between latitude and RMR at the lower experimental temperature. RMR was not correlated with growth rate at population or at individual levels. The results obtained suggest that, unlike in growth and development rates, there is no latitudinal cline in RMR in R. temporaria tadpoles.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 217–224.     

Embryonic development of verongid demosponges supports the independent acquisition of spongin skeletons as an alternative to the siliceous skeleton of sponges

Approximately 85% of extant sponges (phylum Porifera) belong to the class Demospongiae, which contains 14 taxonomic orders. In the orders Verongida, Dictyoceratida, and Dendroceratida, jointly referred to as 'keratose demosponges', the skeleton does not contain siliceous spicules but only spongin fibres. This shared trait has encouraged placement of these orders together within Demospongiae, although their relationships remain uncertain. The present study documents for the first time embryo development in the order Verongida ( Aplysina aerophoba ), providing some clues for phylogenetic inference. Spawned eggs were enveloped by a follicle of maternal cells. Embryos and larvae were chimeric organisms, the blastocoel of which was filled with symbionts and maternal cells migrated from the follicle. The ultrastructure of epithelial larval cells revealed: (1) a basal apparatus characterized by a peculiar, angling accessory centriole; (2) a pear-shaped nucleus with a protruding beak connected to the rootlets of the basal body; and (3) a distinctive Golgi apparatus encircling the nuclear apex. Developmental and ultrastructural findings support the concept, in congruence with recent molecular studies, that Verongida are more closely related to Halisarcida (askeletal sponges) and Chondrosida (askeletal sponges + sponges with spongin + spiculate sponges) than to the remaining 'keratose' orders, making a monophyletic 'supra-ordinal unit' equivalent to a subclass (Myxospongia, new subclass). Hence, spongin skeletons have evolved at least twice in Demospongiae. Independent acquisition of 'corneous' materials as an alternative to silica could have been stimulated by the radiation of diatoms at the Cretaceous–Tertiary boundary (approximately 65 Mya), which depleted silicon in the photic zone of the world's ocean.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 97 , 427–447.     

Adult life spans of butterflies (Lepidoptera: Papilionoidea + Hesperioidea): broadscale contingencies with adult and larval traits in multi-species comparisons

Adult life spans of insects are part of supposedly adaptive life-history syndromes, which involve a variety of reproductive strategies with regard to mating, egg maturation and egg laying. Contingencies of life span with many other morphological, behavioural, and ecological traits are to be expected. We used a data-mining approach, incorporating controls for phylogeny, to uncover broad patterns of trait contingencies in a literature-derived data set of adult life spans for 350 butterfly species. We found that adult feeding habit has strong links with life spans, with pollen-feeders living longer than fruit feeders, which in turn live longer than nectar feeders. Furthermore, traits reducing susceptibility to predators (i.e. aposematism, eye-spots) are associated with longer life. Mud-puddling behaviour as a means of gaining access to minerals, and possibly nitrogen, was generally associated with a short life. We also found strong impacts of the region of occurrence of species (i.e. whether they were tropical or temperate taxa), but received conflicting results depending on whether we analysed field data (longer life in the tropics) or data from caged individuals (shorter life in the tropics). Adult longevity was associated with the growth form of larval host plants (higher on lianas as opposed to herbs, shrubs, or trees), whereas other larval host plant traits did not have strong links with species' life spans. We discuss the hypothetical evolutionary mechanisms explaining those patterns and suggest predictions that could be tested in further research.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 96 , 166–184.     

Evolution of genome size in pines (Pinus) and its life-history correlates: supertree analyses

Genome size has been suggested to be a fundamental biological attribute in determining life-history traits in many groups of organisms. We examined the relationships between pine genome sizes and pine phylogeny, environmental factors (latitude, elevation, annual rainfall), and biological traits (latitudinal and elevational ranges, seed mass, minimum generation time, interval between large seed crops, seed dispersal mode, relative growth rate, measures of potential and actual invasiveness, and level of rarity). Genome sizes were determined for 60 pine taxa and then combined with published values to make a dataset encompassing 85 species, or 70% of species in the genus. Supertrees were constructed using 20 published source phylogenies. Ancestral genome size was estimated as 32 pg. Genome size has apparently remained stable or increased over evolutionary time in subgenus Strobus, while it has decreased in most subsections in subgenus Pinus. We analyzed relationships between genome size and life-history variables using cross-species correlations and phylogenetically independent contrasts derived from supertree constructions. The generally assumed positive relation between genome size and minimum generation time could not be confirmed in phylogenetically controlled analyses. We found that the strongest correlation was between genome size and seed mass. Because the growth quantities specific leaf area and leaf area ratio (and to a lesser extent relative growth rate) are strongly negatively related to seed mass, they were also negatively correlated with genome size. Northern latitudinal limit was negatively correlated with genome size. Invasiveness, particularly of wind-dispersed species, was negatively associated with both genome size and seed mass. Seed mass and its relationships with seed number, dispersal mode, and growth rate contribute greatly to the differences in life-history strategies of pines. Many life-history patterns are therefore indirectly, but consistently, associated with genome size.     

A parallel geographical mosaic of morphological and behavioural aposematic traits of the newt, Cynops pyrrhogaster (Urodela: Salamandridae)

Aposematic animals advertise their unprofitability to potential predators with conspicuous coloration, occasionally in combination with other life-history traits. Theory posits that selection on functionally interrelated aposematic characters promotes the unidirectional evolution of these characters, resulting in an increase or decrease in the effectiveness of the signal. To test whether this prediction applies on a microevolutionary scale, the intra- and interpopulational variations in aposematic coloration, behaviour (which enhances the effectiveness of the coloration) and body size of newts, Cynops pyrrhogaster (Urodela: Salamandridae), were investigated. A parallel geographical mosaic of variation in aposematic coloration and behaviour among populations, independent of body size, was found. Newts on islands displayed more conspicuous aposematic traits than those on the mainland, both morphologically and behaviourally. There was no significant relationship between variation in coloration and behaviour within populations. Male newts displayed more conspicuous coloration than females. Surveys of potential predators suggest that variable natural selection at a local scale, such as predation pressure, may primarily be responsible for the microevolution of variable aposematic traits in newts.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 97 , 613–622.     

Craniodental indicators of prey size preference in the Felidae

In the present study, we used linear morphometrics of the crania, mandible and dentition to explore the association between craniodental shape and prey size among 35 species of living felids. To accomplish this, felids were divided into three prey-size groups: (1) large prey specialists; (2) small prey specialists; and (3) mixed prey feeders. From these linear measurements, large prey specialist felids can be distinguished from small and mixed prey feeders by their relatively robust canines and incisors and relatively wide muzzles. These cranial characters are advantageous when dispatching large prey, due to the stranglehold that cats employ during this activity. Robust canines resist the bending and torsional forces applied by struggling prey and a wider muzzle helps to stabilize grip and distribute bite forces more evenly during the killing bite. Small prey specialists had smaller canines, narrower muzzles and slightly longer jaws for a speed advantage when catching small, quick prey. Mixed prey feeders were intermediate between large and small prey specialists, indicating they are adapted to killing both sizes of prey. Given the success of this ecomorphological analysis of living felids that specialize on different prey sizes, we look forward to applying this same approach to extinct species.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 96 , 784–799.     

Identifying sources of variation in reproductive and life-history traits among five populations of a Chinese lizard (Takydromus septentrionalis, Lacertidae)

Research on life-history traits of squamate reptiles has focused on North American species, while Asian taxa have been virtually ignored. In order to understand general patterns in reptile life histories, we need a broader data base. Our study on the slender-bodied lacertid lizard Takydromus septentrionalis provides the first detailed information on factors responsible for intraspecific variation in reproductive output and life history in a Chinese reptile. Clutches of recently collected lizards from five widely separated localities in China revealed major divergences in female body size at maturation, mean adult female body size, body condition after oviposition, size-adjusted fecundity, relative clutch mass, and mass and shape of eggs. Most of these geographical differences persisted when the same groups of females were maintained in identical conditions in captivity. Additionally, reproductive frequency during maintenance under laboratory conditions differed according to the animals' place of origin. Thus, the extensive geographical variation in reproductive and life-history traits that occurs within T. septentrionalis is exhibited even in long-term captives, suggesting that proximate factors that vary among localities (local conditions of weather and food supply) are less important determinants of life-history variation than are intrinsic (presumably genetic) influences. The maternal abdominal volume available to hold the clutch may be one such factor, based on low levels of variation in Relative Clutch Mass among populations, and geographical variation in the position of trade-off lines linking offspring size to fecundity.  © 2005 The Linnean Society of London, Biological Journal of the Linnean Society , 2005, 85 , 443–453.     

Habitat primary production and the evolution of body size within the hartebeest clade

Local adaptation is a key process in the evolution of biological diversity but relatively few studies have identified the selective forces that drive trait divergence at low taxonomic levels, particularly amongst mammals. Variation in body size across taxa is fundamental as shown by allometric relationships with numerous physiological, morphological and life-history traits. Differences in adult size across cohorts within populations of temperate ungulates are determined by variation in trophic resource availability during growth, suggesting that natural selection might promote the evolution of size divergence across sister taxa through local adaptation to variation in habitat productivity. We tested this hypothesis in the hartebeest ( Alcelaphu s sp.), an antelope lineage including eight extant (or recently extinct) allopatric subspecies that evolved within the last million years and colonized all the African savannahs. We predicted that body size across the subspecies should correlate positively with habitat productivity across taxon ranges. Mean body size of all the hartebeest taxa was quantified using skull length from museum specimens, and climatic variables were used as surrogates of habitat productivity. Body size across subspecies was positively correlated with rainfall, suggesting that variation in habitat primary production may drive morphological evolution between taxa. Focusing at a low taxonomic level has allowed us to identify a critical selective force that may shape divergence in body size, without the confounding effect of variation in trophic niche. © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 92 , 431–440.     

Migratory behaviour affects the trade-off between feather growth rate and feather quality in a passerine bird

Migratory birds have less time for moulting than sedentary birds, which may force them to produce their feathers faster at the expense of reducing feather quality. However, the effects of migration on the trade-off between moult speed and plumage quality remain to be studied in natural populations. We analysed the relationship between growth rate and quality of individual feathers, taking advantage of natural variation between migratory and sedentary populations of blackcaps Sylvia atricapilla . As predicted by life-history theory, individual blackcaps showed variable individual quality, which was revealed by positive correlations between feather growth rate and feather mass within populations. However, migrants grew up their feathers faster, producing lighter feathers than sedentary blackcaps. These results support the idea that feather growth rate and feather quality are traded against each other in blackcaps. Such a trade-off is apparently caused by different selection associated to migratory and sedentary life styles, which opens new insights into the diversification of moult patterns in birds.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 97 , 98–105.     

Egg maturation strategy and survival trade-offs in holometabolous insects: a comparative approach

One of the key predictions of general life-history theory is that reproduction incurs a survival cost. Although there is a convincing body of evidence to support this prediction at the intraspecific level in insects, evidence at the interspecific level is relatively scarce, as is the case for other animals. By employing two methods of phylogenetically controlled analysis, we demonstrate the existence of a negative correlation between life-span and early life investment in reproduction, across a wide diversity of Lepidoptera. The measure of initial reproductive effort used was the 'ovigeny index', defined as the proportion of the lifetime potential egg complement that is mature (ready to lay) upon female emergence. We present a graphical model for holometabolous insects, illustrating the trade-offs that are hypothesized to occur among capital resources (soma vs non-soma and initial eggs vs storage) in relation to variation in ovigeny index. These trade-offs, for which there is some empirical support, are postulated to underlie the life-span/ovigeny index relationship observed in the Lepidoptera and also in other insect orders.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 90 , 293–302.     

Does male secondary sexual trait size reveal fertilization efficiency in Australian Drosophila bipectinata Duda (Diptera: Drosophilidae)?

Males developing relatively large, costly sexually selected traits may be of superior body condition compared to small-ornamented males. Thus, males developing the largest secondary sexual trait in a given environment may also be able to augment their investment into ejaculate quality, and fertilize a larger proportion of a female's eggs. We tested the prediction that the degree of expression of a condition-dependent secondary sexual trait, the male sex comb, in a Cape Tribulation (northeastern Australia) population of Drosophila bipectinata Duda, reveals male ability to fertilize eggs in the absence of sperm competition. This test permitted us also to evaluate whether pre-copulatory sexual selection and fertilization efficiency might act additively to influence male reproductive success because a previous study of the same population demonstrated a positive association between comb size and copulation probability. The results obtained indicate that, although genotypes developing smaller sex combs collectively had a significantly higher rate of insemination failure compared to larger comb genotypes, the hatch rate and the number of eggs laid by females inseminated by the two genotypic categories were not statistically different. The results fail to support the prediction that comb size reveals noncompetitive fertilization efficiency of males in this Australian population.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 406–413.