Electron paramagnetic studies of the copper and iron containing soluble ammonia monooxygenase from <Emphasis Type="Italic">Nitrosomonas europaea</Emphasis>

Soluble ammonia monooxygenase (AMO) from Nitrosomonas europaea was purified to homogeneity and metals in the active sites of the enzyme (Cu, Fe) were analyzed by electron paramagnetic resonance (EPR) spectroscopy. EPR spectra were obtained for a type 2 Cu(II) site with g_|| = 2.24, A_|| = 18.4 mT and g_⊥ = 2.057 as well as for heme and non heme iron present in purified soluble AMO from N. europaea. A second type 2 Cu(II) EPR signal with g_|| = 2.29, A_|| = 16.1 mT and g_⊥ = 2.03 appeared in the spectrum of the ferricyanide oxidized enzyme and was attributed to oxidation of cuprous sites. Comparison of EPR-detectable Cu²⁺ with total copper determined by inductively coupled plasma-mass spectrometry (ICP-MS) suggests that there are six paramagnetic Cu²⁺ and three diamagnetic Cu¹⁺ per heterotrimeric soluble AMO (two paramagnetic and one diamagnetic Cu per αβγ-protomer). A trigonal EPR signal at g = 6.01, caused by a high-spin iron, indicative for cytochrome bound iron, and a rhombic signal at g = 4.31, characteristic of specifically bound Fe³⁺ was detectable. The binding of nitric oxide in the presence of reductant resulted in a ferrous S = 3/2 signal, characteristic of a ferrous nitrosyl complex. Inactivation of soluble AMO with acetylene did neither diminish the ferrous signal nor the intensity of the Cu²⁺-EPR signal.     

pH dependent copper binding properties of a CuA azurin variant with both bridging cysteines replaced with serines

A double mutant of Cu_A azurin was prepared in which both bridging cysteine thiolate ligands of the binuclear Cu_A center were replaced by serine. The copper binding properties of this protein were investigated, and shown to be pH dependent. At lower pH (5.2 ± 0.1), the protein binds one copper per protein molecule as demonstrated by electrospray ionization mass spectrometry. Copper titrations resulted in electronic absorptions at 730 nm (peak) and ca. 330 nm (shoulder) in the UV-Vis spectrum. EPR data show a four line pattern with hyperfine A_∥ = 150 G and g_∥ and g_⊥ values 2.32 and 2.03, characteristic of a type II (T2) copper. Superhyperfines to two nitrogen atoms were also observed. At higher pH (8.5 ± 0.1), the protein binds upto two copper atoms per protein molecule, and copper titrations exhibit a blue transition at 595 nm in the UV-Vis spectrum. The EPR data are consistent with two monomeric sites very similar to one another having hyperfines A_∥ = 182 and 150 G, g_∥ = 2.24 and 2.22 and a similar g_⊥ value of 2.01. These results indicate that both bridging cysteines play a critical role in the Cu_A center, and replacing them with serines is not enough to maintain the symmetrical diamond core structure or the characteristic electronic and functional properties of the Cu_A center.     

Square-planar copper(II) halide complexes of tridentate ligands with π-π stacking interactions and alternating short and long Cu ? Cu distances

The preparation of a new tridentate N₂O-donor ligand N-(2-pyridylmethyl)-3-methoxysalicylaldiminato (HL) is described, together with the corresponding copper(II) complexes [Cu(L)X] (X = Cl⁻, Br⁻). The compounds were characterized by elemental analysis, spectral, magnetic and crystallographic studies. In both compounds, the local molecular structure of the Cu(II) ion involves a square-planar CuN₂OX chromophore, consisting of a deprotonated phenolate oxygen, an imine nitrogen, the pyridine nitrogen and X. In the solid state, π-π stacking interactions are dominantly present, involving the pyridine and phenolate rings of neighboring molecules, which lead to a one-dimensional arrangement with alternating short and long Cu ? Cu distances of [3.720, 4.599 Å] for the bromo complex and of [3.698, 4.696 Å] for the chloro complex. The temperature-dependent magnetic measurements and EPR data of polycrystalline samples, as well as of frozen solutions in CHCl₃ show that there is no observable exchange interaction between the Cu ions. The EPR parameters (g_∥, A_∥) agree with a perfect planar geometry, just as found in the X-ray analysis.     

An EPR signal from the "invisible" copper of cytochrome oxidase.

Sulfide is both an inhibitor and a slow reductant of oxidized cytochrome $\text{c}$ oxidase. When the enzyme is exposed to sulfide for short times (one minute or less) and frozen, the resultant electron paramagnetic resonance (EPR) signals show clearly: low spin heme a, low spin heme a₃, the usual “EPR detectable” Cu²⁺ signal (g_⊥ = 2.17, g_⊥ = 2.03), and a new Cu²⁺ signal superimposed on the same region, with (g_⊥ ～ 2.19, g_⊥ = 2.05). This new signal presumably arises because the antiferromagnetic coupling postulated to exist between the iron atom of heme a₃ and this copper is disrupted when heme a₃ is driven to a low spin state by sulfide. The implications of this result with respect to models of the O₂-binding site and redox geometry of oxidase are briefly discussed.     

Chelation of copper(II) by daunomycin and 5-iminodaunomycin and interaction of the complexes with mononucleotides: An ESR study

Coordination of copper(II) ions by daunomycin and 5-iminodaunomycin has been studied by electron spin resonance spectroscopy, at various values of pH and r, the anthracycline-to-Cu(II) molar ratio. At r = 1–5, polymeric complexes are formed in the case of daunomycin. At r = 5, a mononuclear complex is predominant and at r = 10, this is the only one formed with the ⁶³Cu and ⁶⁵Cu hyperfine interaction being clearly defined in the g_∥ region (g_∥ = 2.26, ⁶³A_∥ = 175; ⁶⁵A_∥ = 190 G). For 5-iminodaunomycin both chelation sites are involved in the coordination and a polymeric structure (in which exchange interactions between Cu(II) centers operate) is stable in the range r = 1–3. At r = 3, the triplet state of a dinuclear Cu(II) complex is observed and 5-iminodaunomycin behaves as both a bridging and a terminal ligand. For r = 5–10, the dinuclear complex coexists with the mononuclear one. In the presence of mononucleotides dGMP, dAMP, dCMP and thymidine, no ternary complex such as mononucleotide/Cu(II)/anthracycline was observed.     

Reaction of mercurials with the CuA center in the soluble fragment of cytochrome ba 3 subunit II from Thermus thermophilus

 Optical absorption, EPR and electrospray ionization mass spectrometries were used to characterize a stoichiometric reaction between mercurials and the soluble ba ₃–Cu_A protein from Thermus thermophilus. Either one Hg(II) or two RHg(II)ions react(s) to destroy the unique spectral properties of the Cu_A center. EPR spectra of the resulting product indicate that one Cu from the binuclear Cu_A center is released into the medium as a Type 2 Cu(II) while the other remains EPR silent. Mass spectra indicate that either one Hg(II) or two RHg(II) ions remain(s) bound to the protein along with one Cu, which is assumed to be a Cu(I) ion. The latter is slowly released from the protein under aerobic conditions as additional Type 2 Cu(II), and this process is catalyzed by fungal laccase, which serves as a strong one-electron oxidant. Received: 23 July 1996 / Accepted: 27 September 1996     

The conformation and orientation of copper(II)-bleomycin intercalated with DNA

EPR data are used to describe the conformation and identity of the atoms coordinated to Cu(II) in Cu(II)-bleomycin bound to oriented DNA fibers. The fibers were slowly drawn from viscous solutions of Cu(II)-bleomycin-DNA containing one Cu(II)-bleomycin to 200 basepairs. EPR measurements were made at room temperature and 90 K for different orientations of the external magnetic field with respect to the helical axes of the fibers. The g-values ($\text{g}{}_{\mathrm{}}\text{=2.21}$, g_⊥ =2.04) and the hyperfine constant ($\text{A}{}_{\mathrm{}}\text{=175}\text{G}$) are consistent with values expected for Cu(II) chelated to a square planar array of ligands. In the oriented fibers, the square planar arrays do not all have the same orientations with respect to the fiber axes. At room temperature the chelated ions have rotational freedom in which the normal to the planar array has almost complete freedom of rotation about axes perpendicular to the DNA fiber axes. The normal maintains an angle of 75° with respect to the axis, in the plane of the basepair, about which it rotates. Nine superhyperfine peaks on the high field side of the EPR spectrum were partially resolved. The number and splitting (12 G) of these superhyperfine peaks indicate that four nitrogen atoms are chelated to Cu(II) in a square planar array. These data on Cu(II)-bleomycin bound to DNA give information on the orientation of the metal-containing portion of bleomycin which lies outside the double helix.     

Crystal structure and magnetic behavior of a copper(II)-(pyrazine 2,3-dicarboxylate) coordination polymer: 3D architecture stabilized by H-bonding

Reaction of Cu(ClO₄)₂ · 6H₂O and pyrazine 2,3-dicarboxylate (pzdc) in aqueous ammonia medium results [Cu(pyrazine 2,3-dicarboxylate)(H₂O)₂] · H₂O (1). The X-ray single crystal structure reveals that the compound is a 1D polymeric sinusoidal infinite chain which through intra- and inter-molecular hydrogen bonding interactions, involving lattice and coordinated water molecules with dicarboxylate oxygens and pyrazine nitrogens, gives rise to a 3D architecture. The variable temperature magnetic measurements show weak antiferromagnetic interactions between the Cu(II) centers. The best fit parameters through the typical equation for a uniform copper (II) chain are: J=−0.25 cm⁻¹, g=2.17, R=1.3×10−6. The EPR spectrum does not alter with temperature (from r.t. to 4 K). The spectra are typical for square-pyramidal geometry of copper(II) ions, g_∥=2.24 and g_⊥=2.10 (average g=2.15, in good agreement to the value obtained by susceptibility fit).     

The Methylococcus capsulatus (Bath) Secreted Protein, MopE*, Binds Both Reduced and Oxidized Copper

Under copper limiting growth conditions the methanotrophic bacterium Methylococcus capsulatus (Bath) secrets essentially only one protein, MopE*, to the medium. MopE* is a copper-binding protein whose structure has been determined by X-ray crystallography. The structure of MopE* revealed a unique high affinity copper binding site consisting of two histidine imidazoles and one kynurenine, the latter an oxidation product of Trp130. In this study, we demonstrate that the copper ion coordinated by this strong binding site is in the Cu(I) state when MopE* is isolated from the growth medium of M. capsulatus. The conclusion is based on X-ray Near Edge Absorption spectroscopy (XANES), and Electron Paramagnetic Resonance (EPR) studies. EPR analyses demonstrated that MopE*, in addition to the strong copper-binding site, also binds Cu(II) at two weaker binding sites. Both Cu(II) binding sites have properties typical of non-blue type II Cu (II) centres, and the strongest of the two Cu(II) sites is characterised by a relative high hyperfine coupling of copper (A_|| = 20 mT). Immobilized metal affinity chromatography binding studies suggests that residues in the N-terminal part of MopE* are involved in forming binding site(s) for Cu(II) ions. Our results support the hypothesis that MopE plays an important role in copper uptake, possibly making use of both its high (Cu(I) and low Cu(II) affinity properties.     

ESR evidence of paramagnetic intermediate formation from water radiolysis products and SOD.

Irradiating the aqueous solution of SOD with ⁶⁰Co γ-rays at 77 K and recording the ESR spectra during thermal annealing one observes, beside the signal of Cu⁺⁺, the paramagnetic intermediate with g_⊥ = 2.008 and g_∥ = 2.039. Because of its thermal stability, up to about 250 K, the formation of the complex ECu⁺⁺…HO₂ is suggested.     

Structural implications derived from the analysis of electron paramagnetic resonance spectra of natural and artificial copper proteins

An extension of a method relating chemical structure to the EPR parameters A_∥ and g_∥ is presented. For complexes having the same atoms of ligation, a decrease in charge of the metal-ligand complex decreases g_∥ and increases A_∥. From this analysis, one concludes that in artificial copper proteins as well as in the naturally occurring nonblue copper proteins copper is ligated to oxygen and nitrogen but not to sulfur. A method is presented for the interpretation of EPR changes that occur with ligand exchange reactions at the Type 2 (nonblue) copper sites such as occur in laccase.     

Synthesis, crystal structure, magnetic properties and EPR spectra of copper(II) acetate derivatives: tetra-(μ-acetato)bis(2-methylaminopyridine)copper(II) and catena-poly(aquadiacetato-μ-3-aminomethylpyridine)copper(II). Sheets formed by chains connected through hydrogen-bonds

The derivatives of Cu(OAc)₂ · H₂O with 2-methylaminopyridine and 3-aminomethylpyridine, [Cu₂(μ-OAc)₄(MeNHpy)₂] (1) and [Cu(OAc)₂(μ-NH₂CH₂py)(H₂O)]_n (2), respectively, have been synthesized and characterized. Compound 1 shows the dimer structure of [Cu₂(μ-OAc)₄(H₂O)₂], with four syn-syn bridging acetate groups and the MeNHpy ligand coordinated in the axial positions. It is antiferromagnetic (2J=−285 cm⁻¹). Signals of the triplet state are observed in its EPR spectrum and the zero-field splitting parameter has been calculated (D=0.36 cm⁻¹; g_∥=2.35; g_⊥=2.07). Otherwise, the ligand 3-aminomethylpyridine acts as bridging bidentate ligand in compound 2, forming infinite zig-zag chains. Each copper atom lies in a square-planar pyramidal coordination, determined by two nitrogen atoms of two bridge ligands, two oxygen atoms of two monodentate terminal acetate groups and a water molecule. The parallel chains form a sheet because of the hydrogen bonds between them. The shortest Cu-Cu distances are: 5.1270, 6.0952 and 6.2163 Å (inter-chains) and 7.875 Å (intra-chain). Compound 2 shows a slight antiferromagnetic effect below 30 K. The EPR spectra show an orthorhombic signal (g₁=2.26; g₂=2.08; g₃=2.06).     

Characterization of the active site and insight into the binding mode of the anti-angiogenesis agent fumagillin to the manganese(II)-loaded methionyl aminopeptidase from Escherichia coli

EPR spectra were recorded for methionine aminopeptidase from Escherichia coli (EcMetAP-I) samples (~2.5 mM) to which one and two equivalents of Mn(II) were added (the latter is referred to as [MnMn(EcMetAP-I)]). The spectra for each sample were indistinguishable except that the spectrum of [MnMn(EcMetAP-I)] was twice as intense. The EPR spectrum of [MnMn(EcMetAP-I)] exhibited the characteristic six-line g2 EPR signal of mononuclear Mn(II) with A_av(⁵⁵Mn)=9.3 mT (93 G) and exhibited Curie-law temperature dependence. This signal is typical of Mn(II) in a ligand sphere comprising oxygen and/or nitrogen atoms. Other features in the spectrum were observed only as the temperature was raised from that of liquid helium. The temperature dependences of these features are consistent with their assignment to excited state transitions in the S=1, 2 ... 5 non-Kramers doublets, due to two antiferromagnetically coupled Mn(II) ions with an S=0 ground state. This assignment is supported by the observation of a characteristic 4.5 mT hyperfine pattern, and by the presence of signals in the parallel mode consistent with a non-Kramers spin ladder. Upon the addition of the anti-angiogenesis agent fumagillin to [MnMn(EcMetAP-I)], very small changes were observed in the EPR spectrum. MALDI-TOF mass spectrometry indicated that fumagillin was, however, covalently coordinated to EcMetAP-I. Therefore, the inhibitory action of this anti-angiogenesis agent on EcMetAP-I appears to involve covalent binding to a polypeptide component at or near the active site rather than direct binding to the metal ions.     

Formation of oligonuclear complexes between copper(II) and 1-hydroxyethane-1,1-diphosphonic acid

The complex formation between Cu(II) and 1-hydroxyethane-1,1-diphosphonic acid was studied by means of pH-potentiometry and spectroscopy (UV-Vis and EPR). Speciation revealed the formation of a trinuclear complex [Cu₃A₃]⁶⁻ besides the mononuclear 1:1 and 1:2 species. In the complex [Cu₃A₃]⁶⁻ , which is not formed with other diphosphonic derivatives, the ligands adopt chelating and bridging modes via the four O atoms of the two phosphonates, the alcoholic-OH groups remaining in the protonated form.     

A spectral investigation of the copper(II) complex of the antitumor compound bleomycin

A thorough spectral investigation of the copper(II) complex of the antitumor compound, bleomycin, has been carried out in solution employing optical, difference optical, electron spin resonance, and circular dichroism techniques. The optical spectrum of a pH = 7 solution of the 1:1 complex between copper(II) and bleomycin is characterized by a broad weak band in the visible region (λ_max = 610 nm) that cannot be resolved and intense ultraviolet bands at 317 (? = 2800), 327 (shoulder), 250 (? = 4700), and 257 nm (shoulder). The circular dichroism spectrum in the visible region shows the broad and weak visible absorption band contains at least three components (558, 675, and 880 nm) that are likely to be “d-d” in origin. The electron spin resonance spectrum is characteristic of a tetragonal d⁹ copper(II) system showing no rhombic distoritions at X-band frequencies (g_x = g_y ± 0.002). The spin Hamiltonian parameters for the pH = 7.0 solution corrected for second order effects are A_∥ = 177 × 10^?4 cm^?1, A_⊥ ? 15 × 10^?4 cm^?1, g_∥ = 2.214, g_⊥ = 2.039. Most interesting was the observation of extra hyperfine splitting due to endogenous nitrogen coordination in a 30% glycerol glass (A^N = 12.0 × 10^?4 cm^?1). That pattern is best interpreted as a seven-line sequence associated with three liganded nitrogens. A dramatic change in all spectral properties occurs when the pH of the copper(II)-bleomycin complex is lowered to 2.5. All these data taken together suggest a CuN₃O coordination complex in solution. Details and justifications as well as a discussion of the limitations of the interpretations are presented.     

EPR spectroscopic study of a dinuclear copper(II) complex of tolfenamic acid

The copper(II) complex with tolfenamic acid [Cu(tolf)₂(H₂O)]₂ was studied by X-band and K-band EPR spectroscopies in the temperature range from 90 to 300 K. The Cu²⁺ ions in dinuclear complex show a strong antiferromagnetic exchange interaction with |J| = 292 cm⁻¹. The EPR spectra, which were observed for [Cu(tolf)₂(H₂O)]₂, are typical powder spectra of the copper pairs. The spectra exhibit the hyperfine structure in low temperature range. The values of the spin-Hamiltonian parameters were determined on the basis of the best fit for the simulated spectra at both K-band (0.75 cm⁻¹) at T = 298 K and X-band (0.3 cm⁻¹) at T = 93 K as compared with the experimentally observed spectra. These values show that the local environment around the copper species is distorted tetragonal pyramid. This EPR evidence is consistent with the crystallographic data.     

ESR Parameters for Cupric Bleomycin in the Mobilized State

Abstract

The configuration of the copper complex of the glycopeptide bleomycin, CuBlm, is presumed to be pyramidal square planar from a previous X-ray structural determination of a fragment of cupric bleomycin. This study presents evidence for a difference in the ESR parameters for cupric bleomycin in the liquid as opposed to the solid state. A decrease in A_iso for CuBlm in the liquid state can be directly surmised from the low frequency S-band spectrum for which three of the four cupric hyperfine lines are partially resolved. Computer simulated spectra infer that the absolute value of A_∥ increases about 100 MHz and the value of A_⊥ may change sign for CuBlm in the liquid state. Simulations using a rotational correlation time of about 250 psec. indicate that CuBLM may not be spherical in the liquid phase. The fastest component for anisotropic motion could dominate and account for the well resolved cupric hyperfine structure. Furthermore, it is argued from an analysis of the cupric hyperfine coupling constants that the CuBlm structure opens up at room temperature and that the cupric ion is displaced from the square plane.

Supported by NIH Grants Ca-22184 and RR-01008 and the University of Wisconsin-Milwaukee.     

Copper binding traps the folded state of the SCO protein from Bacillus subtilis

The SCO protein from the aerobic bacterium Bacillus subtilis (BsSCO) is involved in the assembly of the cytochrome c oxidase complex, and specifically with the Cu_A center. BsSCO has been proposed to play various roles in Cu_A assembly including, the direct delivery of copper ions to the Cu_A site, and/or maintaining the appropriate redox state of the cysteine ligands during formation of Cu_A. BsSCO binds copper in both Cu(II) and Cu(I) redox states, but has a million-fold higher affinity for Cu(II). As a prerequisite to kinetic studies, we measured equilibrium stability of oxidized, reduced and Cu(II)-bound BsSCO by chemical and thermal induced denaturation. Oxidized and reduced apo-BsSCO exhibit two-state behavior in both chemical- and thermal-induced unfolding. However, the Cu(II) complex of BsSCO is stable in up to nine molar urea. Thermal or guanidinium-induced unfolding of BsSCO-Cu(II) ensues only as the Cu(II) species is lost. The effect of copper (II) on the folding of BsSCO is complicated by a rapid redox reaction between copper and reduced, denatured BsSCO. When denatured apo-BsSCO is refolded in the presence of copper (II) some of the population is recovered as the BsSCO-Cu(II) complex and some is oxidized indicating that refolding and oxidation are competing processes. The proposed functional roles for BsSCO in vivo require that its cysteine residues are reduced and the presence of copper during folding may be detrimental to BsSCO attaining its functional state.     

Copper complexes with new oxaaza-pendant-armed macrocyclic ligands: X-ray crystal structure of a macrocyclic copper(II) complex

The synthesis of new oxaaza macrocyclic ligands (2-4) derived from O¹,O⁷-bis(2-formylphenyl)-1,4,7-trioxaheptane and functionalized tris(2-aminoethyl)amine are described. Mononuclear copper(II) complexes were isolated in the reaction of the corresponding macrocyclic ligand and copper(II) perchlorate. The structure of the [Cu(2)](ClO₄)₂ complex was determined by X-ray diffraction analysis. The copper(II) ion is five-coordinated by all N₅ donor atoms, efficiently encapsulated by the amine terminal pendant-arm, with a trigonal-bipyramidal geometry. The complexes are further characterized by UV-Vis, IR and EPR studies. The electronic reflectance spectra evidence that the coordination geometry for the Cu(II) complexes is trigonal-bipyramidal with the ligands 1 and 2 or distorted square-pyramidal with the ligands 3 and 4. The electronic spectra in MeCN solutions are different from those in the solid state, which suggest that some structural modification may occur in solution. The EPR spectrum of powder samples of the copper complex with 2 presents axial symmetry with hyperfine split at g_// with the copper nuclei (I = 3/2), which is characteristic of weakly exchange coupled extended systems. The EPR parameters (g_// = 2.230, A_// = 156 × 10⁻⁴ cm⁻¹ and g_⊥ = 2.085) indicate a d_x²-y² ground state. The EPR spectra of the complexes with ligands 3 and 4 show EPR spectra with a poorly resolved hyperfine structure at g_//. In contrast, the complex with ligand 2 shows no hyperfine split and a line shape which was simulated assuming rhombic g-tensor (g₁ = 2.030, g₂ = 2.115 and g₃ = 2.190).     

Tetra-, penta- and hexacoordinate copper(II) complexes with N3 donor isoindoline-based ligands: Characterization and SOD-like activity

Reaction of 1,3-bis(2′-Ar-imino)isoindolines (HLⁿ, n = 1-7, Ar = benzimidazolyl, N-methylbenzimidazolyl, thiazolyl, pyridyl, 3-methylpyridyl, 4-methylpyridyl, and benzthiazolyl, respectively) with Cu(OCH₃)₂ yields mononuclear hexacoordinate complexes with Cu(Lⁿ)₂ composition. With cupric perchlorate square-pyramidal [Cu^II(HLⁿ)(NCCH₃)(OClO₃)]ClO₄ complexes (n = 1, 3, 4) were isolated as perchlorate salts, whereas with chloride Cu^II(HLⁿ)Cl₂ (n = 1, 4), or square-planar Cu^IICl₂(HLⁿ) (n = 2, 3, 7) complexes are formed. The X-ray crystal structures of Cu(L³)₂, Cu(L⁵)₂, [Cu^II(HL⁴)(NCCH₃)(OClO₃)]ClO₄, Cu^IICl(L²) and Cu^IICl(L⁷) are presented along with electrochemical and spectral (UV-Vis, FT-IR and X-band EPR) characterization for each compound. When combined with base, the isoindoline ligands in the [Cu^II(HLⁿ)(NCCH₃)(OClO₃)]ClO₄ complexes undergo deprotonation in solution that is reversible and induces UV-Vis spectral changes. Equilibrium constants for the dissociation are calculated. X-band EPR measurements in frozen solution show that the geometry of the complexes is similar to the corresponding X-ray crystallographic structures. The superoxide scavenging activity of the compounds determined from the McCord-Fridovich experiment show dependence on structural features and reduction potentials.