Sediment diatom assemblages and composition of pore-water dissolved organic matter reflect recent eutrophication history of Lake Peipsi (Estonia/Russia)

A paleolimnological approach was used for the assessment of the recent eutrophication history and identification of possible reference conditions in the large, shallow, eutrophic Lake Peipsi. Lake Peipsi is the fourth largest lake by area, and the largest transboundary lake in Europe, being shared between Estonia and Russia. Lake Peipsi has been anthropogenically impacted over a longer time-scale than that covered by instrumental limnological monitoring. The ²¹⁰Pb record and down-core distribution of fly-ash particles in the 40-cm core from the middle part of the lake suggest 130 years of sediment accumulation. Diatom assemblages indicate alkaline mesotrophic conditions and a well-illuminated water column, sediment pore-water fluorescence index values suggest low autochthonous productivity and a stable aquatic ecosystem similar to natural reference conditions during the second half of 19th and early 20th century. Near-synchronous stratigraphic changes including the expansion of the eutrophic planktonic diatom Stephanodiscus parvus, the appearance of new species associated with eutrophic lakes and the decrease in the relative abundance of littoral diatoms, together with changes in the fluorescence properties of sediment pore-water dissolved organic matter, imply increased nutrient availability, enlarged phytoplankton crops, reduced water-column transparency and the onset of human-induced disturbances in the lake since the mid-20th century. The most conspicuous expansion of eutrophic planktonic diatoms and maximum concentration of siliceous microfossils occur simultaneously with changes in the fluorescence indexes of pore-water dissolved organic matter, indicating a pronounced increase in the contribution of autochthonous organic matter to the lake sediment. This implies that nutrient loading and anthropogenic impact was at a maximum during the 1970s and 1980s. Sedimentary diatom flora may reflect a reduction of phosphorus loading since the 1990s. However, the absolute abundance of planktonic diatoms and sediment pore-water fluorescence index values vary greatly implying that the lake ecosystem is still rather unstable.     

藏东南巴松错200年沉积过程及其对硅藻记录的影响

青藏高原东南部高寒山区广泛发育冰川湖泊,湖泊沉积过程同时受控于区域气候、流域水文、地质条件及湖泊形态特征。基于放射性²¹⁰Pb/¹³⁷Cs和¹⁴C定年法,对巴松错沉积物理(粒度、分选系数)和化学指标(TOC、TN、C/N)进行分析,发现18世纪末到19世纪末湖泊沉积过程显著变化,表现为迅速变缓趋势。通过分析区域树轮重建的气候序列(温度、降水及相对湿度)及冰川地貌调查资料,认为气候变化及流域冰川分布位置是影响该湖泊沉积过程的重要因素。小冰期末期冰川前缘靠近湖区,随后温度上升导致冰川融水激增、水动力加强,从而引起湖泊沉积粒度的粗化。随着冰川前缘不断后退,径流输送距离增长、沉积分选变好、粒度细化。此外,该地区活跃的地质活动也可能是湖泊沉积过程明显变化的重要诱因。湖泊沉积硅藻是研究气候环境变化的有力指标。过去200多年巴松错硅藻组合变化不明显(DCCA=0.47 SD),说明该地区气候环境变化未超过其生态阈值。通过与其他沉积指标进行对比分析发现,巴松错硅藻记录受到流域水文和湖泊沉积过程影响,主要表现为外源输入和/或湖岸浅水区来源...     

River connectivity and climate behind the long‐term evolution of tropical American floodplain lakes

This study presents the long‐term evolution of two floodplains lakes (San Juana and Barbacoas) of the Magdalena River in Colombia with varying degree of connectivity to the River and with different responses to climate events (i.e., extreme floods and droughts). Historical limnological changes were identified through a multiproxy‐based reconstruction including diatoms, sedimentation, and sediment geochemistry, while historical climatic changes were derived from the application of the Standardised Precipitation‐Evapotranspiration Index. The main gradients in climatic and limnological change were assessed via multivariate analysis and generalized additive models. The reconstruction of the more isolated San Juana Lake spanned the last c. 500 years. Between c. 1,620 and 1,750 CE, riverine‐flooded conditions prevailed as indicated by high detrital input, reductive conditions, and dominance of planktonic diatoms. Since the early 1800s, the riverine meander became disconnected, conveying into a marsh‐like environment rich in aerophil diatoms and organic matter. The current lake was then formed around the mid‐1960s with a diverse lake diatom flora including benthic and planktonic diatoms, and more oxygenated waters under a gradual increase in sedimentation and nutrients. The reconstruction for Barbacoas Lake, a waterbody directly connected to the Magdalena River, spanned the last 60 years and showed alternating riverine–wetland–lake conditions in response to varying ENSO conditions. Wet periods were dominated by planktonic and benthic diatoms, while aerophil diatom species prevailed during dry periods; during the two intense ENSO periods of 1987 and 1992, the lake almost desiccated and sedimentation rates spiked. A gradual increase in sedimentation rates post‐2000 suggests that other factors rather than climate are also influencing sediment deposition in the lake. We propose that hydrological connectivity to the Magdalena River is a main factor controlling lake long‐term responses to human pressures, where highly connected lakes respond more acutely to ENSO events while isolated lakes are more sensitive to local land‐use changes.     

Diatom evidence for the timing and causes of eutrophication in Lake Victoria,East Africa

The determination of the history and causes of recent eutrophication and intensified thermal stratification in Lake Victoria is still hampered by the sparsity of paleolimnologic coverage of the enormous lake. Five new diatom records from Ugandan waters now show that a transition from Aulacoseira-dominated planktonic assemblages to those dominated by long Nitzschia spp., occurred in northern coastal sites from the mid-1970s to mid-1980s. Similar transitions developed from the late 1960s to early 1970s offshore and from the 1940s to early 1950s along the Kenyan coast, suggesting a time-transgressive process. These changes are not readily attributable to the trophic effects of Nile perch population growth during the early 1980s, but more likely reflect responses to long-term nutrient enrichment and climatic instability in the region. The diversity of planktonic diatom communities has declined dramatically, and a namesake variety of Aulacoseira nyassensis may now be nearly extirpated. Although local phytoplankton communities varied considerably in the past, the current domination of diatom assemblages by Nitzschia is apparently unprecedented in the 15,000-year history of Lake Victoria.     

Diatom succession in the post-glacial sediments of the Komořany Lake,North-West Bohemia,Czechoslovakia

The Late-glacial and Postglacial sediments of the former Komo?any Lake in North-West Bohemia were studied by means of diatom analysis to trace the pattern of past environmental change in the lake. Several phases of lake development could be distinguished. Originally the Komo?any Lake was a eutrophic shallow water basin. The diatom succession in the early Postglacial sediment indicates alternating alkaliphilic, epiphytic and planktonic diatom communities associated with changes in water level in the basin. At the beginning of the Subatlantic period the water level began to rise and the development of planktonic diatoms, typical of small eutrophic lakes, occurred. Later, the basin became shallow again and the number of indifferent and acidophilous diatoms increased. This is typical for the final phase of the infilling process of a lake before its transformation to peatland     

浴仙湖沉积物记录的云南极端干旱事件与生态响应评价

为评价湖库生态环境对极端气候的响应特征, 以经历水位明显降低的云南浴仙湖为研究对象, 通过沉积物多指标分析并结合多变量统计方法, 识别了2009—2013年极端干旱事件驱动湖泊生态环境变化的模式。其中沉积物粒度显示近百年来湖泊水文条件总体稳定, 但在2011年左右粗颗粒物质和中值粒径增大, 同期沉积物元素、同位素记录表明水体营养水平没有明显变化。硅藻群落近百年来以湖泊底栖物种占绝对优势, 约2011年开始优势种属Fragilaria被Nitzschia、Navicula等河流水体中常见的物种所替代, 且硅藻多样性指标总体增加, 而指示水位变化的PCA主轴一解释了硅藻群落结构的主要变化(约55.8%)。总之, 极端干旱事件的发生与持续明显改变了湖泊生物群落结构与多样性特征, 已成为影响该气候敏感区水资源安全与生态环境功能的重要挑战之一。     

Recent environmental change in North African wetland lakes: diatom and other stratigraphic evidence from nine sites in the CASSARINA Project

All nine wetland lakes in the CASSARINA North African suite of sample sites have been disturbed strongly by human activity during the 20th century. Dated lake sediment core were used to provide evidence of the extent of recent environmental change at each site. Sedimentary diatoms at seven sites were useful for inferring salinity change trends during the last century. At two sites preservation problems severely degraded the sedimentary diatom record. Sediment core integrity was otherwise established.Lithostratigraphic measurements indicated some site specific changes in soil erosion and sediment composition but, for the Egyptian Delta lakes, no physical signal synchronous with Aswan High Dam construction was found. Sedimentary diatom assemblages were generally site characteristic and halophilous taxa were common. At two sites planktonic diatoms indicated some recent eutrophication but generally the assemblages were more indicative of salinity changes. Diatom-inferred salinity trends for the seven sites typically indicated that reductions in water salinity occurred sometime during the early or mid 20th century.Rather than climate, hydrological modification of water resources is implicated as the primary driver of salinity changes during most of the 20th century. In the western North African region these modifications were mainly local land drainage and water diversion programmes to alleviate winter flooding and/or promote summer water availability. In the Delta region, the Nile has been intensively exploited since antiquity and intensively so from the late 19th century to release more fresh water for agriculture. Here, diatom records indicate that freshening began well before the Aswan High Dam but salinity fluctuations have tended to diminish during the latter part of the 20th century. A small reversal in the water freshening trend in the 1980/90s was possibly a response to land subsidence/sea-level change or to reduced freshwater supply.Freshwater supply to the sites is generally diminishing as former freshwater surpluses switch to deficit. One site (Merja Bokka, Morocco) became completely dry in 1998 as agriculture encroached and Megene Chitane, the only acid lake in Tunisia, is currently affected by excessive inflow abstraction. At the beginning of the 21st century, eight of the nine CASSARINA sites persist as viable but modified aquatic ecosystems. They nevertheless continue to support valuable aquatic biodiversity, especially in the Delta sites and in Chitane. The modern diatom communities are clearly tolerant of considerable environmental change but the remaining sites are increasingly threatened by major hydrological disturbance. Base-line floristic data for the late 20th century are given but continuous biomonitoring combined with effective management is needed urgently to help conserve North Africa's diminishing natural wetland lake resources.     

Early-20th Century Environmental Changes Inferred Using Subfossil Diatoms from a Small Pond on Melville Island, N.W.T., Canadian High Arctic

Diatom-based paleolimnological studies are being increasingly used to track long-term environmental change in arctic regions. Little is known, however, about the direction and nature of such environmental changes in the western Canadian high Arctic. In this study, shifts in diatom assemblages preserved in a ²¹⁰Pb-dated sediment core collected from a small pond on Melville Island, N.W.T., were interpreted to record marked environmental changes that had taken place since the early 20th century. For most of the history of the pond recorded in this core, the diatom assemblage remained relatively stable and was dominated by Fragilaria capucina. A major shift in species composition began in the early-20th century, with a sharp decline in F. capucina and a concurrent increase in Achnanthes minutissima. In the last 20 years, further changes in the diatom assemblage occurred, with a notable increase in the Nitzschia perminuta complex. The assemblage shifts recorded at this site appear to be consistent with environmental changes triggered by recent climatic warming.     

ABSENCE OF EVIDENCE IS NOT EVIDENCE OF ABSENCE: IS STEPHANODISCUS BINDERANUS (BACILLARIOPHYCEAE) AN EXOTIC SPECIES IN THE GREAT LAKES REGION?1

The eutrophic, freshwater diatom species Stephanodiscus binderanus (Kütz.) Willi Krieg. has long been considered a nuisance exotic alga introduced from Eurasia to the Great Lakes in North America in the early to mid‐20th century. However, our paleolimnological data from Lake Simcoe, Ontario, provide unequivocal evidence that this taxon has been present in the Great Lakes region since at least the late 17th century. Subfossil diatom valves were identified and enumerated at high resolution in ²¹⁰Pb‐dated sediment cores from four sites across the lake. The taxonomic identification of S. binderanus was confirmed using SEM. The historical presence of this species in Lake Simcoe indicates somewhat naturally productive conditions and also refutes the idea that S. binderanus is a nonindigenous species to North America. This study underscores the caution that should be applied to questions of diatom (and protistan) distributions in time and space. Clearly, the absence of evidence is not evidence of absence.     

Diatom assemblages in sediments of Lake Juusa, Southern Estonia with an assessment of their habitat

Diatom analysis of surface sediments and two sediment cores from different sedimentation areas of a small closed lake was undertaken with the aim of acquiring knowledge on the dependence of the distribution of diatom assemblages on lake bathymetry. Lake Juusa was selected for the study because we have for this lake a large data set about the lithological composition of sediments and macrofossil and cladoceran records for the Holocene. A high carbonate content (20–60%) in the sediment sequence indicates high carbonacity and relatively stable pH values during the Holocene. On the basis of comprehensive analysis, abrupt water-level fluctuations and changes in the trophic status were established. Results of this study showed that the fluctuations of the water-level were the leading factor determining the habitats of diatom assemblages in the lake. In the surface sediment samples planktonic species such as Cyclotella spp., Stephanodiscus spp. and Aulacoseira spp. had a depth optimum at 3–4 m and the most abundant periphytic taxa were distributed mostly at depths shallower than 3.5 m. The same regularity was established in sediment cores where a good correlation between planktonic species and lake water depth was found in sediments accumulated at water depths >4 m. Lake Juusa appears to be a proper site for detailed environmental reconstructions over the Holocene, and the results will give us a good opportunity to analyse the history of water-level fluctuations in other small Estonian lakes. Electronic Supplementary Material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: K. Martens     

Consistent patterns in diatom assemblages and diversity measures across water‐depth gradients from eight Boreal lakes from north‐western Ontario (Canada)

1. Until recently, the distribution of diatom species assemblages and their attributes (e.g. species richness and evenness) in relation to water depth have been identified but not quantified, especially across several lakes in a region. Here, we examined diatom assemblages in the surface sediment across a water‐depth gradient in eight small, boreal lakes in north‐western Ontario, minimally disturbed by human activities. 2. Surface‐sediment diatom assemblages were collected within each lake along a gentle slope from near‐shore to the centre deep basin of the lake, at a resolution of ～1 m water depth. Analysis of sedimentary samples provided an integrated view of assemblages that were living in the lake over several years and enabled a high‐resolution analysis of many lakes. The study lakes ranged in water chemistry, morphology and size and are located along an east–west transect approximately 250 km long in north‐western Ontario (Canada). 3. The majority of diatom species were distributed along a continuum of depth, with those taxa having similar habitat requirements forming distinct, though overlapping, assemblages. Three major zones of diatom assemblages in each lake were consistently identified: (i) a near‐shore assemblage of Achnanthes (sensu lato), Nitzschia, Cymbella (sensu lato) and other benthic species; (ii) a mid‐depth assemblage of small Fragilaria (sensu lato)/small Aulacoseira and various Navicula taxa; and (iii) a deep‐water assemblage of planktonic origin (mainly Discotella spp.). 4. The depth of the transition between assemblage zones varied between the eight lakes. The boundary between the deep‐water planktonic zone and the mid‐depth benthic zone varied according to water chemistry and was probably related to light attenuation. The boundary was deeper in lakes with the lower dissolved organic carbon and total phosphorus (TP) (i.e. less light attenuation) and vice versa. 5. Generally, species richness, species evenness and turnover rate of species as a function of depth were significantly lower in the planktonic assemblage zone in comparison with the two zones nearer the shore. Reproducibility of species and assemblage distributions across the depth gradient of the lakes illustrated that, despite potential for sediment transport, detailed ecological characterisation of diatom species can be gleaned from sedimentary data. Such data are often lacking, particularly for near‐shore benthic species.     

Retrospective of diatom diversity dynamics in thanatocenoses under climate change

The species diversity of planktonic diatoms in thanatocenoses of bottom sediments in Lake Bol’shoe Miassovo (Southern Urals) has been studied and a reconstruction of the thermal regime of the lake for the last 1000 years is made. It is established that the restructuring of the diatom assemblage and decrease in species diversity in thanatocenoses are caused by rapid climate warming that began in the 19th century in the Southern Urals.     

Interactions of temperature and nutrient changes: effects on phytoplankton in the Piburger See (Tyrol,Austria)

1. Contemporary limnological and palaeolimnological data from Piburger See (Eastern Alps, Austria) allowed the reconstruction of its trophic state since the late 19th century and the assessment of changes in phytoplankton biomass and species composition in relation to selected environmental parameters. 2. A radiometrically dated sediment core from Piburger See was analysed for geochemical parameters, spheroidal carbonaceous particles (SCPs), bacterial and algal pigments, and diatoms. The low SCP sediment inventory assigns Piburger See to the ‘cleaner’ sites in Europe with respect to fossil‐fuel related air pollution. The sedimentary pigment and diatom record reveals moderate eutrophication during the 20th century, followed by a slow re‐oligotrophication since the mid‐1980s because of lake restoration starting in 1970. 3. Epilimnetic temperature for Piburger See was reconstructed using air temperature records. A pronounced temperature increase has been recorded during the mid‐1940s and since the late‐20th century, both promoting algal growth and changes in species composition (e.g. increase in centric diatoms and recent bloom of Asterionella formosa). 4. Climate scenarios project additional substantial warming for this mountain lake by the end of the 21st century which will be most pronounced during the growing season. The predicted change in lake water temperature and thermal dynamics represents a key driver for the trophic and ecological status of Piburger See in the future.     

Paleolimnology and diatom flora of the Miocene Quincy Diatomite,Washington, USA

The Quincy Diatomite, central Washington, USA, is a middle Miocene (∼ 15 Ma) lacustrine deposit located between flows of the Columbia River Basalt Group. Two primary localities along the western margin of the deposit are examined for stratigraphic and geographic variation. Three lithologic units are recognized in the deposit and are distinguished by distinct diatom floras and subtle lithologic differences. Diatom assemblages vary geographically along the western margin of the basin. Distinctions between these assemblages are confirmed through analysis of point count data using nonMetric Multidimensional Scaling and cluster analyses. Three stages of lake development, directly influenced by the regional geology and geography, are recognized. The earliest stage was likely deposited in a series of small-interconnected pocket lakes that were eutrophic and slightly alkaline. This lake stage was succeeded by a period of shallower water depth, and dominated by benthic species. The latest stage of the lake is interpreted as representing a deepening and expansion of the lake, based on the dominance of planktonic diatom species. Tectonic uplift of the western Frenchman Hills Anticline combined with overall subsidence of the Quincy Basin during intermediate and late stages of lake development is interpreted to be the driver for relative changes in lake bathymetry.     

The recovery of a very shallow eutrophic lake, 20 years after the control of effluent derived phosphorus

1. Monitoring at fortnightly to monthly intervals of a very shallow, lowland lake over 24 years has enabled the time course of recovery from nutrient enrichment to be investigated after high external P loading of the lake (>10 g P m^?2 year^?1) was reduced between 1977 and 1980. 2. The lake showed a relatively rapid response during the spring and early summer, with a reduction in phytoplankton biomass occurring after 5 years when soluble reactive phosphorus concentration was <10 μg L^?1. 3. However, during the later summer the response was delayed for 15 years because of sustained remobilisation of phosphorus from the sediment. The greater water clarity in spring and a gradual shift from planktonic to benthic algal growth may be related to the reduction in internal loading after 15 years. 4. Changes in the phytoplankton community composition were also observed. Centric diatoms became less dominant in the spring, and the summer cyanobacteria populations originally dominated by non‐heterocystous species (Limnothrix/Planktothrix spp.) almost disappeared. Heterocystous species (Anabaena spp. and Aphanizomenon flos‐aquae) were slower to decline, but after 20 years the phytoplankton community was no longer dominated by cyanobacteria. 5. There were no substantial changes in food web structure following re‐oligotrophication. Total zooplankton biomass decreased but body size of Daphnia hyalina, the largest zooplankton species in the lake, remained unchanged, suggesting that the fish population remained dominated by planktivorous species. 6. Macrophyte growth was still largely absent after 20 years, although during the spring water clarity may have become sufficient for macrophytes to re‐establish.     

POST-PLEISTOCENE DIATOM SUCCESSION IN DOUGLAS LAKE,MICHIGAN1,2

Analysis of fossil diatom assemblages recovered from a 12.2 m core reveals a series of distinct floristic associations. The associations present are correlated with sediment type and reflect successive stages in the development of the lake. A basal red clay sediment contains a planktonic association characteristic of large, proglacial lakes. At 10.0 m core depth, sediment type changes to fine sand containing a higher abundance of benthic species indicating reduction of water depth at the deposition site. Marl sediments begin at 9.7 m and contain an association characteristic of a small, shallow, oligotrophic lake. At 8.8 m the marl sequence is interrupted by highly organic sediment containing a eutrophic plankton association. From 8.5 to 7.6 m the sediment type grades from marl to organic, apparently reduced sediments and diatom associations present contain successively higher percentages of planktonic species associated with eutrophic habitats. By the 7.6 m level a eutrophic plankton association, similar to the modern flora, is established and remains remarkably constant to the surface of the section.     

Water level changes in a large shallow lake as reflected by the plankton:periphyton-ratio of sedimentary diatoms

Biostratigraphic diatom analyses were carried out on a short sediment core from the large shallow-water Lake Võrtsjärv, Estonia, in order to relate the diatom composition to the instrumental water level record. We dated the sediment core by radiometric methods (²¹⁰Pb, ¹³⁷Cs, ²⁴¹Am) and spheroidal fly-ash particle abundance chronology and evaluated the statistical significance of the relationships between the percentage of planktonic diatoms and the water level continuously monitored since 1871. Before the 1960s, the percentage of planktonic diatoms in the sediment showed quite strong positive relationship to water level. The impact of eutrophication after the 1960s presumably masked the influence of water level changes on the diatom community. In addition, statistical analysis of the upper part of the sediment core (1970—present day) together with measured limnological parameters of the lake showed that water transparency had the strongest influence on diatoms, while temperature, pH and alkalinity had lesser impacts. Our study shows that the planktonic:periphytic diatom ratio in the sediment can be used to track overall trends of the lake-level changes in Lake Võrtsjärv before the onset of cultural eutrophication; however, the results have to be interpreted carefully, taking into consideration other possible limnological factors such as water transparency, nutrients and wind.     

Catchment‐mediated atmospheric nitrogen deposition drives ecological change in two alpine lakes in SE Tibet

The south‐east margin of Tibet is highly sensitive to global environmental change pressures, in particular, high contemporary reactive nitrogen (Nr) deposition rates (ca. 40 kg ha^?1 yr^?1), but the extent and timescale of recent ecological change is not well prescribed. Multiproxy analyses (diatoms, pigments and geochemistry) of ²¹⁰Pb‐dated sediment cores from two alpine lakes in Sichuan were used to assess whether they have undergone ecological change comparable to those in Europe and North America over the last two centuries. The study lakes have contrasting catchment‐to‐lake ratios and vegetation cover: Shade Co has a relatively larger catchment and denser alpine shrub than Moon Lake. Both lakes exhibited unambiguous increasing production since the late 19th to early 20th. Principle component analysis was used to summarize the trends of diatom and pigment data after the little ice age (LIA). There was strong linear change in biological proxies at both lakes, which were not consistent with regional temperature, suggesting that climate is not the primary driver of ecological change. The multiproxy analysis indicated an indirect ecological response to Nr deposition at Shade Co mediated through catchment processes since ca. 1930, while ecological change at Moon Lake started earlier (ca. 1880) and was more directly related to Nr deposition (depleted δ¹⁵N). The only pronounced climate effect was evidenced by changes during the LIA when photoautotrophic groups shifted dramatically at Shade Co (a 4‐fold increase in lutein concentration) and planktonic diatom abundance declined at both sites because of longer ice cover. The substantial increases in aquatic production over the last ca. 100 years required a substantial nutrient subsidy and the geochemical data point to a major role for Nr deposition although dust cannot be excluded. The study also highlights the importance of lake and catchment morphology for determining the response of alpine lakes to recent global environmental forcing.     

Hydrologic and anthropogenic influences on aquatic macrophyte development in a large,shallow lake in China

相似文献   

Seasonal and microhabitat influences on diatom assemblages and their representation in sediment traps and surface sediments from adjacent High Arctic lakes: Cape Bounty,Melville Island,Nunavut

The spatial (i.e. microhabitat) and temporal (i.e. seasonal) characteristics of diatom assemblages in adjacent High Arctic lakes were studied intensively June–August 2004. These baseline data are used to improve understanding of modern diatom community dynamics, as well to inform paleoenvironmental reconstructions. Diatoms were collected approximately weekly through the melt season from each principal benthic substrate (moss/macrophyte, rock scrapes, littoral sediment), plankton, and sediment traps, and were compared to the uppermost 0.5 cm of a surface core obtained from the deepest part of the lake where sediment cores are routinely collected. Water samples were collected concurrently with diatom samples to investigate species–environment relationships. The lakes share approximately half of their common taxa, the most abundant overall in both lakes being small Cyclotella species. Results of detrended correspondence analysis (DCA) indicate that the largest gradient in species turnover existed between benthic and planktonic communities in both lakes, and that sediment trap and the surface core top samples most closely resemble the planktonic assemblage, with an additional contribution from the lotic environment. Our results indicate clear micro-spatial controls on species assemblages and a degree of disconnection between the benthos and deep lake sediments that manifests as an under-representation of benthic taxa in deep lake surface sediments. These findings are particularly relevant in the context of interpreting the paleoenvironmental record and assessing ecosystem sensitivity to continued climate change.