Neutralization of acidified water by use of Rhizopus delemar immobilized with a cellulose membrane

To solve serious environmental problems caused by the acidification of pond and lake water by acid rain, remediation methods must be used to keep water pH values neutral. In this study, a microbial method to neutralize acidified water was developed. The neutralization activities of 30 strains of bacteria, yeasts and fungi were measured with a medium adjusted to pH 3.0. Because fungi showed high neutralization properties, the Rhizopus delemar fungus was used to study the characteristics of acidified water neutralization. When R. delemar cells were cultured in a media acidified with nitric, sulfuric and hydrochloric acids, the cells neutralized acids by secreting basic compounds including ammonia. The cells also assimilated nitric acid. R. delemar was used to neutralize pond water adjusted to pH 4.0 with nitric acid. R. delemar cells increased the pH value of pond water from 4.0 to around 7.0 within 2 days, although indigenous microorganisms had not been able to neutralize the same pond water. In this study, R. delemar immobilized in a cellulose tube neutralized acidified water repeatedly by the draw-fill method.     

Molecular characterization of β-fructofuranosidases from Rhizopus delemar and Amylomyces rouxii

Of the 19 strains of Rhizopus delemar deposited as Rhizopus oryzae, seven of them, NBRC 4726, NBRC 4734, NBRC 4746, NBRC 4754, NBRC 4773, NBRC 4775, and NBRC 4801, completely hydrolyzed exogenous sucrose and fructooligosaccharides. The sucrose-hydrolyzing enzyme was purified from the culture filtrate of R. delemar NBRC 4754 and classified to β-fructofuranosidase, similar to that of Amylomyces rouxii CBS 438.76. Fragments including β-fructofuranosidase genes (sucA) of seven strains of R. delemar and A. rouxii CBS 438.76 were amplified and sequenced by PCR with degenerated primers synthesized on the basis of the internal amino acid sequences of purified enzymes and successive inverse PCR. Nucleotide sequences of the obtained fragments revealed that open reading frames of 1,569 bp have no intron and encode 522 amino acids. The presumed proteins contained the typical domain of the glycoside hydrolase 32 family, including β-fructofuranosidase, inulinase, levanase, and fructosyltransferases. Amino acid sequences of SucA proteins from the seven strains of R. delemar were identical and showed 90.0 % identity with those of A. rouxii CBS 438.76. A dendrogram constructed from these amino acid sequences showed that SucA proteins are more closely related to yeast β-fructofuranosidases than to other fungal enzymes.     

Lipase-catalyzed hydrolysis of Crambe oil in AOT-isooctane reversed micelles

Summary The hydrolysis by 1,3-specific lipases (Humicola lanuginosa, Mucor miehei, Rhizopus delemar andRhizopus javanicus) of the highly symmetric, high molecular weight triglycerides fromCrambe abyssinica (Crambe) seed oil is studied in an AOT-stabilized microemulsion system. Enzyme kinetic data shows that, of the lipases studied,Rhizopus javanicus lipases exerts the highest hydrolytic activity towards this new seed oil.     

Identification and Characterization of Rhizot,a Novel LTR Retrotransposon of Rhizopus oryzae and R. delemar

A novel retrotransposon Rhizot was identified in Rhizopus oryzae and R. delemar. Rhizot has a unique structure that consists of a pol ORF similar to non-LTR (long terminal repeat) retorotransposons between two LTRs. Rhizot was distributed in all Rhizopus species tested. The Rhizot pol gene was transcribed in the liquid culture, and was induced by UV and oxidative stress.     

Regioselectivity of lipases in organic solvents

Summary A facile system was developed for the quantitative determination of lipase regioselectivities in organic solvents towards the 1(3)-position of glycerides. It was utilized for the measurement of the regioselectivities displayed by lipase preparations fromMucor miehei (Lipozyme),Pseudomonas fluorescens andRhizopus delemar. It was shown that the lipases fromMucor miehei andPseudomonas fluorescens do in fact not display the high 1(3)-specifities reported in the literature for these enzymes.     

Inhibition of the cell wall regeneration and reversion in protoplasts ofRhizopus nigricans

During cultivation in a nutrient medium with snail gastric juice the protoplasts ofRhizopus nigricans produce an incomplete cell wall and grow. A true growth, associated with nuclear division, is involved. Morphology of growth of the formations is determined by the structure of the incomplete cell wall. When the incomplete wall is formed by a thin fibrillar net the growing formation assumes the physically optimal shape—i.e. a sphere; when the net is dense polar growth predominates. The degree of construction of the new wall depends on the activity of snail gastric juice enzymes which decreases during the cultivation. When fresh snail enzymes were added at certain intervals, only a fine fibrillar net was formed on the surface of growing protoplasts. The formations grew for up to 8 d under these conditions, reached several hundred μm in size and the number of nuclei increased up to 80-fold. When the blocking of the wall synthesis was interrupted, a complete cell wall regenerated on the surface of these giant formations and a reversion to hyphae was observed. The incomplete cell wall functions as a passive morphogenetic factor: It can influence the morphology of the growing protoplasts but it cannot induce reversion to hyphase and secure the permanent existence of these structures.     

The Purification and the Properties of Three Kinds of Lipases from Rhizopus delemer

The study was undertaken to clarify whether three kinds of lipases (EC 3.1.1.3) secreted from Rhizopus delemar are originally different or identical with each other. First of all, the purification of those lipases was carried out and their enzymatic properties were examined. Their properties including the stability on heat and pH, precipitabilities at a certain pH, the behaviours on a SE-Sephadex C50 column and on a Sephadex G200 column and so on were compared.

From the results, A-lipase is clearly different from the other two lipases. On the other hand, it seems that B- and C-lipases are originally identical.     

Utilization of horticultural waste (Apple Pomace) for multiple carbohydrase production from Rhizopus delemar F2 under solid state fermentation

The brown rot fungus Rhizopus delemar F₂ was shown to produce extracellular thermostable and multiple carbohydrase enzymes. The potential of Rhizopus delemar F2 in utilizing apple pomace under solid state fermentation (SSF) is the purpose of the study. Solid state fermentation (SSF) is a very effective technique opposed to submerged fermentation in various aspects. Enhanced production of multiple carbohydrases 18.20?U?g^?1 of cellulose, 158.30?U?g^?1 of xylanase, 61.50?U?g^?1 of pectinase and amylase 21.03?U?g^?1 was released by microwave pretreatment of apple pomace at 450?W for 1?min and then by incubation the culture thus obtained at 30?°C for 6 days with moisture content of 1:4.5. Apple pomace can serve as a potential source of raw material for the production of multiple carbohydrases. Besides, it can find great commercial significance in production of bioethanol and various industries like textile, fruit juice, paper and pulp industry.     

Microbial lipase production on a polymeric resin

Rhizopus delemar was grown in a submerged culture and produced a lipase at 14 U/ml. It was compared with solid state fermentation with a polymeric resin (Amberlite). The lipase was produced and simultaneously adsorbed on the support: 96 U/g initial dry matter were obtained when dextrin was used as the carbon source against only 68 and 58 U/g for maltose and glucose, respectively.     

Specificity and glyceride synthesis by mycelial lipases of Rhizopus delemar

Mycelial lipase activity of the mould Rhizopus delemar was purified by gel filtration chromatography to three distinct proteins of notable lipase activity. The three enzymes were designated A′, B′ and C′, according to elution volumes from a Sephadex G150 column. The capacity of the three lipases to catalyse glyceride synthesis from free fatty acids and glycerol indicated a tendency towards short-chain and unsaturated fatty acids in preference to long-chain saturated fatty acids. The postional specificity of all lipases involved in such synthetic reactions indicated the formation of ester bonds at positions 1 and 3 of glycerol.     

Application of C-13 NMR Spectrometry to the Structural Investigation of the Novel Bicyclic Anhydrooctose Uronic Acid Nucleosides,Constituents of Ezomycins

Seven kinds of lipase were immobilized to Sepharose 4 B, porous glass beads and ion-exchange resins. Lipase immobilized to porous glass beads was most suitable for the treatment of yolk-contaminated egg white. Optimum pH and temperature were not varied by the immobilization. The immobilized lipoprotein lipase from Pseudomonas fluorescens and lipase from Rhizopus delemar were applied to the treatment of yolk-contaminated egg white. The foam stability of the spray-dried egg white solution containing 0.05 % yolk was completely recovered by the 30 min’s treatment with both immobilized lipases. This demonstrated the feasibility of improving the foaming properties of yolk-contaminated egg white by the immobilized lipase treatment.     

Microbial catalyzed esterification of primary and secondary alcohols in organic solvent

Summary Microbial esterification of primary and secondary short chain alcohols with butyric acid in organic solvent has been studied. A screening for 2-octylbutyrate hydrolysis between microorganisms belonging to different genera allowed the selection of 12 microbial strains able to hydrolyze this substrate. The potential of these microorganisms in catalyzing ester formation was checked for various 1- and 2-alkylbutyrate derivatives:Rhizopus delemar,Rhizopus oryzae andSarcina lutea promoted both 1- and 2-alkylbutyrate synthesis with almost complete molar conversion of the primary alcohols, whileAspergillus niger andYarrowia lipolytica only catalyzed 1-alkanol esterification.     

Application of immobilized lipase to regio-specific interesterification of triglyceride in organic solvent

Summary Lipase from Rhizopus delemar was immobilized by entrapment with photo-crosslinkable resin prepolymers or urethane prepolymers or by binding to various types of porous silica beads. The immobilized lipase preparations thus obtained were examined for their activity in converting olive oil to an interesterified fat (cacao butter-like fat), whose oleic acid moieties at 1- and 3-positions were replaced with stearic acid moieties, in the reaction solvent n-hexane. Although all of the immobilized preparations exhibited some activity, lipase adsorbed on Celite and then entrapped with a hydrophobic photo-crosslinkable resin prepolymer showed the highest activity, about 75% of that of lipase simply adsorbed onto Celite. Entrapment markedly enhanced the operational stability of lipase.Dedicated to Professor H. Holzer, Freiburg University, on his 60th birthday (June 13, 1981)     

Lysis of Yeast Cell Wall by Enzymes from Streptomycetes

This paper deals with yeast cell-wall lytic enzymes formed by Streptomyces with regard to the connection with the cell-wall structure.

In the first place, 29 organisms of β-glucanase-producing Streptomycetes were selected among 777 strains belonging to genus Streptomyces by means of a cylinder-plate method employing the yeast glucan as a substrate. As for these organisms, the depolymerizing activity against the yeast glucan was considered to be mainly due to β-1,3-glucanase activity. Against the heat-treated cell of bakers’ yeast, the crude enzymes merely showed poor lytic activities, however, in the combined employment with some protease preparations, especially with an alkaline protease from St. satsumaensis nov. sp., a remarkable increase of the lytic activities was demonstrated. On the other hand, the intact cell wall of bakers’ yeast, or both the heat-treated and the intact cells of Sacch. cerevisiae 18.29 strain were dissolved very easily by a sole action of β-glucanase or of protease, respectively. In consequence, it seemed that the lysis occurred with different mechanisms in response to differences of substrates. On this subject, the results of investigations and discussions were described in special measure. In addition, the possibility, that some other enzymes than β-glucanase or protease might concern to the lysis of the cell wall, was also investigated and discussed.     

Relationship between saccharifying capacity and isolation sources for strains of the Rhizopus arrhizus complex

To discover the differences and modes of saccharifying ability among Rhizopus arrhizus strains isolated from various habitats, we grew strains in glutinous rice media to monitor the production of glucose from starch using spectrophotometry at regular time intervals. The saccharifying capacity of R. arrhizus var. delemar was found to be weaker than that of var. arrhizus and var. tonkinensis. These data provide additional phenotypic support for recognization of this genetically distinct lineage (var. delemar) as a separate species. Clinical isolates were generally low in saccharifying abilities, while all strains from southwest China had an excellent diastatic power.     

Autolytic Enzyme System of Clostridium botulinum

The mode of action of the autolytic enzymes of Clostridium botulinum type A strain 190L was investigated using a partially purified autolysin. The autolysin completely solubilized SDS-treated cell walls of the organism, liberating 1.2 moles of NH₂-terminal-L-alanine and 0.6 moles of reducing groups per mole of glutamic acid. Neither the NH₂-termini of other amino acids nor COOH-termini of any amino acids were released. These results show that the autolysin contains an N-acetylmuramyl-L-alanine amidase and a hexosaminidase. A disaccharide and peptides were isolated from the wall lysate in a chromatographically homogeneous state. The reducing end of the disaccharide was elucidated to be N-acetylglucosamine by borohydride reduction. This fact indicates that the hexosaminidase is likely to be an endo-β-N-acetylglucosaminidase. A possible structure of the cell wall peptidoglycan is proposed.     

The Role of Aquaporins in pH-Dependent Germination of Rhizopus delemar Spores

Rhizopus delemar and associated species attack a wide range of fruit and vegetables after harvest. Host nutrients and acidic pH are required for optimal germination of R. delemar, and we studied how this process is triggered. Glucose induced spore swelling in an acidic environment, expressed by an up to 3-fold increase in spore diameter, whereas spore diameter was smaller in a neutral environment. When suspended in an acidic environment, the spores started to float, indicating a change in their density. Treatment of the spores with HgCl₂, an aquaporin blocker, prevented floating and inhibited spore swelling and germ-tube emergence, indicating the importance of water uptake at the early stages of germination. Two putative candidate aquaporin-encoding genes—RdAQP1 and RdAQP2—were identified in the R. delemar genome. Both presented the conserved NPA motif and six-transmembrane domain topology. Expressing RdAQP1 and RdAQP2 in Arabidopsis protoplasts increased the cells'' osmotic water permeability coefficient (P_f) compared to controls, indicating their role as water channels. A decrease in R. delemar aquaporin activity with increasing external pH suggested pH regulation of these proteins. Substitution of two histidine (His) residues, positioned on two loops facing the outer side of the cell, with alanine eliminated the pH sensing resulting in similar P_f values under acidic and basic conditions. Since hydration is critical for spore switching from the resting to activate state, we suggest that pH regulation of the aquaporins can regulate the initial phase of R. delemar spore germination, followed by germ-tube elongation and host-tissue infection.     

Inhibition of Rhizopus lactate dehydrogenase by fructose 1,6-bisphosphate

The closely related fungi Rhizopus oryzae and Rhizopus delemar are often used for the production of lactic and fumaric acid, respectively. These organisms differ primarily by their ability to regenerate NAD through alternative fermentative routes. R. oryzae contains an NAD-dependent l-lactate dehydrogenase enzyme, RO-LdhA, that is primarily responsible for production of lactic acid, while both organisms contain another enzyme, LdhB that is thought to be involved in lactic acid production only under certain growth conditions. We have characterized LdhB from both R. oryzae and R. delemar, respectively referred to as RO-LdhB and RD-LdhB in this study, and have determined that RO-LdhB is significantly more effective than RD-LdhB with regard to k_cat/K_m with reductive LDH activity. Only negligible oxidative LDH activity could be measured with both enzymes; however, the presence of an amino terminal fusion with a small ubiquitin-related modifier, SUMO, increased the oxidative activity per μmol protein by more than 100-fold, while having little effect on the reductive LDH activity. We also determined that RO-LdhA, RO-LdhB, and RD-LdhB were all significantly inhibited in a non-competitive manner by fructose 1,6-bisphosphate (FBP) with K_i values of 1.2, 3.2, and 28.8 mM. Intracellular concentrations of FBP were tested with fermentative conditions to demonstrate that this metabolic intermediate does accumulate to levels that would likely cause inhibition of the R. oryzae LDH. Possible reasons for the significant K_i differences between the nearly identical LdhB proteins are discussed.     

Comparative studies onChlorella cell walls: Induction of protoplast formation

Among 12 strains ofChlorella ellipsoidea, C. vulgaris, andC. saccharophila tested, 4 strains (1,C. ellpsoidea; 2,C. vulgaris; 1,C. saccharophila) formed osmotically labile protoplasts after treatment with mixtures of polysaccharide degrading enzymes. The relationship between enzymatical digestibility and structure or composition ofChlorella cell walls were studied by electron microscopy and staining techniques with some specific dyes. The cell wall structures of the 12Chlorella strains were grouped into three types: (1) with a trilaminar outer layer, (2) with a thin outer monolayer, and (3) without an outer layer. Protoplasts were formed only from the strains with a cell wall of Type 2. In the strains with a cell wall of Type 1, the outer layer protected the inner major microfibrillar layer against enzymatic digestion. The cell wall of Type 3 was totally resistant to the enzymes; the chemical composition of the cell wall would be somewhat different from that of other types.     

Inhibition of Incorporation of l-Alanine into Uridine-diphospho N-acetylmuramic Acid by Glycine

Lipases from Aspergillus niger and Rhizopus delemar hydrolyzed triolein and produced l,2 (2,3)-diolein and 2-monoolein. These two lipases appears to have strong specificity towards the outer chains of the triglyceride. Comparing the proportions of fatty acids in position 1 (3) of cocoa butter with proportions of fatty acids liberated after limited hydrolysis of cocoa butter, it becomes clear that these two lipases do not hydrolyze the ester bond in position 2 of the triglyceride.

On the other hand, lipases from Geotrichum candidum Link and Penicillium cyclopium Westring attacked the fatty acid chains regardless of their positions. Geotrichum candidum lipase liberated oleic acid and palmitic acid in preference to stearic acid from cocoa butter.