Mutagenicity of Intermediates Produced in the Early Stage of the Browning Reaction of Triose Reductone with Nucleic Acid Related Compounds on Bacterial Tests

Two types of reductive intermediates, linear and tricyclic forms, isolated from browning mixtures of triose reductone (TR) with guanine and its derivatives showed evident mutagenicity on Salmonella typhimurium TA 100 without S-9 mixture. The linear intermediates, N²-(3-oxo-2-hydroxypropenyl) compounds of guanine, guanosine, 2′(3′)-guanylic acid and 5′-guanylic acid were more effective than the tricyclic one, l, N²-(2-hydroxypropenylidene)guanine, though they were far less active than 4-nitroquinoline-N-oxide. No acceleration in mutagenicity was observed with Cu^{2 +} and other metal ions. The reaction mixtures of TR and nucleic acid bases were also mutagenic on TA 100. Intermediates of TR with guanine and its derivatives did not have a lethal effect in Recassays with Bacillus subtilis.     

Polymorphism in Rice Amylases at an Early Stage of Seed Germination

A polymorphism in rice amylases at an early stage of seed germination is analyzed by zymogram. In nonglutinous cultivars of rice, α-amylase isozymes are mainly confirmed in germinating seeds. However, in glutinous cultivars, β-amylase isozymes, which are not confirmed in nonglutinous cultivars, make up the major part of the total amylase activity and the expression of α-amylases are repressed.     

Mechanisms of Browning Degradation of d-Fructose in Special Comparison with d-Glucose-Glycine Reaction

Degradation mechanisms of d-fructose by the interaction with amino acids or organic acids in aqueous solution at initial pH 5.5 heated at 100°C were investigated and a substantial difference in mechanisms between fructose degradation and glucose-glycine reaction was presented. d-Fructose browned more intensely than did d-glucose in lower concentration of glycine and/or in earier stage of reaction period. By catalytic action of carboxylate anions without any condensation with amino groups, d-fructose was decomposed to 3-deoxy-d-erythrohexosulose, 5-(hydroxymelhyl)-2-furaldehyde, and a less amount of pyruval-dehyde through caramelization. It was considered that the main path of fructose degradation was 1,2-enolization but 2,3-enolization would also occur to a little extent.     

Chloroplast Hsp93 Directly Binds to Transit Peptides at an Early Stage of the Preprotein Import Process

Three stromal chaperone ATPases, cpHsc70, Hsp90C, and Hsp93, are present in the chloroplast translocon, but none has been shown to directly bind preproteins in vivo during import, so it remains unclear whether any function as a preprotein-translocating motor and whether they have different functions during the import process. Here, using protein crosslinking followed by ionic detergent solubilization, we show that Hsp93 directly binds to the transit peptides of various preproteins undergoing active import into chloroplasts. Hsp93 also binds to the mature region of a preprotein. A time course study of import, followed by coimmunoprecipitation experiments, confirmed that Hsp93 is present in the same complexes as preproteins at an early stage when preproteins are being processed to the mature size. In contrast, cpHsc70 is present in the same complexes as preproteins at both the early stage and a later stage after the transit peptide has been removed, suggesting that cpHsc70, but not Hsp93, is important in translocating processed mature proteins across the envelope.Most chloroplast proteins are encoded by the nuclear genome as higher M_r preproteins that are fully synthesized in the cytosol before being imported into the chloroplast. The import process is initiated by binding of the N-terminal transit peptide of the preprotein to the translocon at the outer envelope membrane of chloroplasts (TOC) complex, in which Toc159 and Toc34 function as receptors and Toc75 is the outer membrane channel. This step is followed by binding of the transit peptide to the translocon at the inner envelope membrane of chloroplasts (TIC) machinery, the central components of which include the Tic20/Tic56/Tic100/Tic214 channel complex and Tic110. Tic110 functions as the stromal receptor for transit peptides and also as a scaffold for tethering other translocon components (for reviews, see Li and Chiu, 2010; Shi and Theg, 2013; Paila et al., 2015). The actual translocation of the bound preproteins across the envelope is powered by hydrolysis of ATP in the stroma (Pain and Blobel, 1987; Theg et al., 1989), and it is therefore assumed that some stromal ATPase motor proteins bind the preproteins as they emerge from the inner membrane and use the energy of ATP hydrolysis to translocate the preproteins across the envelope into the stroma.Three stromal ATPases have been identified in the translocon complex: cpHsc70 (chloroplast heat shock cognate protein 70 kD), Hsp90C (chloroplast heat shock protein 90), and Hsp93/ClpC (93-kD heat shock protein). Hsp93, the first to be identified, belongs to the Hsp100 subfamily of AAA+ proteins (ATPases associated with various cellular activities) and was detected in coimmunoprecipitation experiments in complexes containing other translocon components and preproteins undergoing import (Akita et al., 1997; Nielsen et al., 1997; Chou et al., 2003; Rosano et al., 2011). In Arabidopsis (Arabidopsis thaliana), Hsp93 exists as two isoforms encoded by the genes HSP93III and HSP93V. Removal of the more abundant Hsp93V results in protein import defects, while double knockout of the two genes causes lethality (Constan et al., 2004; Kovacheva et al., 2007; Chu and Li, 2012; Lee et al., 2015). Purified recombinant Hsp93III can bind to the transit peptide of pea (Pisum sativum) ferredoxin-NADP+ reductase in vitro (Rosano et al., 2011). In addition, the N-terminal domain of Hsp93 is critical both for its in vivo functions and its association with chloroplast membranes and Tic110, suggesting that one of the major functions of Hsp93 requires it to be localized at the envelope with Tic110 (Chu and Li, 2012). However, because many prokaryotic Hsp100 family proteins function as the regulatory components of the Clp proteases (Kress et al., 2009; Nishimura and van Wijk, 2015), and, in Arabidopsis, some Clp proteolytic core components have also been found at the envelope fraction, it has been proposed that Hsp93 is involved in degradation of misfolded or damaged proteins at the envelope (Sjögren et al., 2014). However, whether the Clp proteolytic core can form a stable complex with Hsp93 in higher plant chloroplasts remains to be shown.In mitochondria and the endoplasmic reticulum, protein import is driven by the Hsp70 family of proteins. In chloroplasts, accumulating evidence also supports that Hsp70 is important for chloroplast protein import. Purified recombinant Hsp70 can bind in vitro to the transit peptide of the small subunit of RuBP carboxylase preprotein (prRBCS; Ivey et al., 2000). Stromal Hsp70 can be coimmunoprecipitated with preproteins undergoing import and with other translocon components, and mutations resulting in reduced or altered stromal Hsp70 activity cause protein import defects (Shi and Theg, 2010; Su and Li, 2010). Recently, it has been shown, in moss, that increasing the K_m for Hsp70 ATP hydrolysis results in an increased K_m for ATP usage in chloroplast protein import, indicating that stromal Hsp70 is indeed one of the proteins supplying ATP-derived energy to power import (Liu et al., 2014). Finally, stromal Hsp90C has been shown to be part of active translocon complexes in coimmunoprecipitation experiments (Inoue et al., 2013). As further evidence that Hsp90 is important for protein import into chloroplasts, the Hsp90 ATPase activity inhibitor radicicol reversibly inhibits the import of preproteins into chloroplasts (Inoue et al., 2013).Presence of the three ATPases in the translocon was demonstrated by coimmunoprecipitation after solubilization of chloroplast membranes under conditions that preserve the large membrane protein complexes, either by solubilization with nonionic detergents or by treating chloroplasts with crosslinkers that link all proteins in a complex together (Akita et al., 1997; Nielsen et al., 1997; Shi and Theg, 2010; Su and Li, 2010; Inoue et al., 2013). These complexes contain translocon components that directly bind to preproteins, and also other proteins that are associated with these translocon components but have no direct contacts with the preproteins. For example, Nielsen et al. (1997) demonstrated the presence of Hsp93 in the translocon by binding of prRBCS to isolated pea chloroplasts and then solubilization of chloroplast membranes with the nonionic detergent decylmaltoside. Under these conditions, an anti-Hsp93 antibody specifically immunoprecipitated Hsp93 together with Toc159, Toc75, Toc34, Tic110, and prRBCS (Nielsen et al., 1997). The result showed that Hsp93 is in the same complexes with these proteins but did not provide information whether Hsp93 directly binds to them. It is possible that Hsp93 only has direct contacts with, for example, Tic110, which then binds to prRBCS. Direct binding, in particular to the transit peptide region, would provide strong evidence that an ATPase functions as a protein translocating motor, rather than in assisting the assembly of other translocon components or in the folding or degradation of imported proteins. Furthermore, if all three ATPases were found to be involved in preprotein translocation, it would be important to understand how they work together; for example, whether they preferentially bind different preproteins, bind to different regions of a preprotein, or act at different stages of the import process.Here, we examined whether Hsp93 can directly bind to preproteins undergoing import into chloroplasts, and compared the timing of the binding of Hsp93 and cpHsc70 to the preproteins. We used isolated pea chloroplasts, rather than isolated Arabidopsis chloroplasts, because pea chloroplasts exhibit more robust import ability (Fitzpatrick and Keegstra, 2001). Various crosslinkers that react with cysteines were then used to achieve more specific crosslinkings, followed by solubilization with the ionic detergent lithium dodecyl sulfate (LDS) to thoroughly solubilize chloroplast membranes and to disrupt noncovalent protein-protein interactions. Our results show that Hsp93 directly binds to preproteins undergoing import. Import time course experiments further revealed that Hsp93 functions primarily during the early stage of import, whereas cpHsc70 associates with substrates being imported at both the early stage and a later stage after transit peptide removal.     

Formation ol Deoxy-fructosazme and Its 6-Isomer on the Browning Reaction between Glucose and Ammonia in Weak Acidic Medium

Deoxy-fructosazine and its 6-isomer were isolated from the browning mixture prepared by the reaction between glucose and ammonia in weak acidic medium, and were identified, respectively. The two compounds among all pyrazine derivatives formed in the reaction were incomparably abundant in approximately equal ratio. It was supposed that deoxy-fructosazine and its 6-isomer would be formed concurrently by condensation of ammonia with 3-deoxy-glucosone and isoglucosamine.     

Formation of 1-Alkyl-5-(hydroxymethyl)pyrrole-2-aldehydes in the Browning Reaction between Hexoses and Alkylamines

d-Glucose and butyl-, ethyl-, or methyl-amine were reacted at 100°C or 70°C in an aqueous or methanol solution neutralized with acetic acid to obtain browning reaction products, and the formation of N-substituted 5-(hydroxymethyl)pyrrole-2-aldehydes in the reaction was investigated.

At first, the reaction products were treated with 2,4-dinitrophenylhydrazine reagent and the resulting 2,4-dinitrophenylhydrazones (2,4-DNPs) were fractionated by column chromatography to isolate crystalline 2,4-DNPs. When the products obtained from d-glucose and butylamine were treated with the reagent consisting of 2,4-dinitrophenylhydrazine, sulfuric acid, water and either ethanol or methanol, 2,4-DNP of l-butyl-5-(ethoxymethyl or meth-oxymethyl)pyrrole-2-aldehyde (I or II) was isolated. In this formation ethanol or methanol was considered to be directly involved. On the other hand, 2,4-DNP of 5-hydroxymethyl derivative (III) was not detected, even when the reagent containing water alone as a solvent was used.

Secondly, in order to isolate the free pyrrolealdehyde, the above browning reaction products were extracted with ethyl acetate and the extract was chromatographed on a silica gel column. From the main carbonyl fraction was isolated 1-butyl-, ethyl-, or methyl-5-(hydroxymethyl)-pyrrole-2-aldehyde (III, IV, or V), which was characterized by elementary analyses and ultraviolet, infrared, and nuclear magnetic resonance spectra.     

万寿菊属不同品种初花期抗旱特性分析

以万寿菊属(Tagetes)9个品种为试验材料,研究了自然持续干旱胁迫对它们初花期的花最大直径、叶色、旱害指数等形态指标以及叶绿素含量(Chl a+b,Ch a/b)、叶片相对含水量(RWC)、叶片保水力(WHC)、叶片和花的脯氨酸、可溶性糖和可溶性蛋白含量等生理指标的影响,以揭示其抗旱特性及其生理机制.结果显示:(1)持续6d干旱胁迫条件下,万寿菊9个品种花的最大直径显著降低,叶绿素含量和相对含水量均呈明显下降趋势.(2)万寿菊叶片的脯氨酸、可溶性蛋白和可溶性糖含量均呈上升趋势;而花的脯氨酸含量持续上升,可溶性蛋白含量呈下降趋势,但可溶性糖含量变化趋势复杂.(3)万寿菊旱害指数与其叶片相对含水量、叶绿素总含量、叶片和花的脯氨酸含量、叶片可溶性蛋白含量呈极显著相关.研究表明,抗旱性强的品种可以通过调节自身的渗透调节物质含量减轻干旱伤害;9个品种初花期抗旱性强弱依次为:珍妮>金门>鸿运>拳王>巨人>发现>小英雄>大英雄>迪阿哥.     

Analysis of Bacterial Spatial Patterns at the Initial Stage of Biofilm Formation

Using sophisticated microscopy techniques, we observed the spatial pattern of bacteria colonizing a sterile 316L stainless steel coupon as bulk water containing bacteria flowed across the coupon. The experiments used stainless steel of differing roughness and surface chemistry. The ultimate goal was to identify surface features which influence bacterial adsorption. The immediate statistical goal was to distinguish patterns consistent with complete spatial randomness from patterns showing regularity or aggregation. This goal was accomplished by using modified analyses of distance functions commonly applied in field ecology. The method protected against a potential multiple comparisons problem. For the null value of the distance function, we calculated tolerance envelopes such that the tolerance level was simultaneous for all distances of concern. Computer simulation experiments showed that the nominal level was accurate. The methodology was effective for detecting and describing patterns of colonization known not to be completely spatially random.     

Possibility of the Nonenzymatic Browning (Maillard) Reaction in the ISM

The possibility of the occurrence of the nonenzymatic browning reaction in the gaseous phase in the interstellar medium has been investigated by using Density Functional Theory computations. Mechanisms for the reactions between formaldehyde (Fald) + glycine (Gly), Fald + NH ₃ and Fald + methylamine (MeAm) have been proposed, and the possibility of the formation of different compounds in the proposed mechanisms has been evaluated through calculating the Gibb's free energy changes for different steps of the reaction, by following the total mass balance. The Fald + Gly reaction under basic conditions is found as the most favorable for producing 1-methyl-amino methene or 1-methyl-amino methelene (MAM). The reaction under acidic conditions is found to be the least favorable for producing MAM. The Fald + NH ₃ reaction is found to be plausible for the production of MeAm, which can participate by reaction with Fald, resulting in the formation of MAM.     

Exome Sequencing Identifies Early Gastric Carcinoma as an Early Stage of Advanced Gastric Cancer

Gastric carcinoma is one of the major causes of cancer-related mortality worldwide. Early detection and treatment leads to an excellent prognosis in patients with early gastric cancer (EGC), whereas the prognosis of patients with advanced gastric cancer (AGC) remains poor. It is unclear whether EGCs and AGCs are distinct entities or whether EGCs are the beginning stages of AGCs. We performed whole exome sequencing of four samples from patients with EGC and compared the results with those from AGCs. In both EGCs and AGCs, a total of 268 genes were commonly mutated and independent mutations were additionally found in EGCs (516 genes) and AGCs (3104 genes). A higher frequency of C>G transitions was observed in intestinal-type compared to diffuse-type carcinomas (P = 0.010). The DYRK3, GPR116, MCM10, PCDH17, PCDHB1, RDH5 and UNC5C genes are recurrently mutated in EGCs and may be involved in early carcinogenesis.     

红盖鳞毛蕨孢子囊早期发育与质体分化的研究

利用光学显微镜和透射电子显微镜观察了红盖鳞毛蕨(Dryopteris erythrosora(Eaton)O.Ktze.)孢子囊的发育及在此期间质体的分化过程。研究表明:(1)红盖鳞毛蕨孢子囊的发育类型属于薄囊蕨型;(2)绒毡层为混合型,即内层绒毡层为原生质团型,外层绒毡层为腺质型;(3)孢子囊原始细胞中的质体通过3条路径分化,其一,原始细胞中含淀粉粒的质体通过分裂分配到下方细胞,继而进入孢子囊柄;其二,原始细胞分裂产生的新生质体被分配到上方细胞,进而被分配到除顶细胞外的原基细胞中,顶细胞将含淀粉粒的质体通过分裂分配到外套层原始细胞中;其三,顶细胞也将具淀粉粒的质体通过分裂分配到内部细胞,使分裂产生的孢原细胞和绒毡层原始细胞具新生质体;造孢细胞和孢子母细胞的质体具淀粉粒,孢子母细胞还具油体,新生孢子中具造粉体和油体;两层绒毡层具新生质体,随着退化外层绒毡层出现造粉体,内层绒毡层出现油体;(4)红盖鳞毛蕨与少数被子植物小孢子发育阶段质体分化模式类似,由前质体分化为造粉体再到油体。研究结果为蕨类植物质体在孢子囊发育过程不同组织细胞中的差异分化提供了新观察资料,为蕨类植物发育生物学和系统演化研究提供科学依据。     

Formation of 2,5-Bis-(d-threo-trihydroxypropyl)pyrazine and Its 6-Isomer by the Oxidative Browning Reaction of d-Xylose with Ammonium Acetate in a Methanolic Medium

A pyruvate kinase-lacking mutant of Brevibacterium flavum produced 22.6 g/liter of l-aspartic acid with glutamic acid as a by-product, when cultured for 48 hr in a medium containing 100 g/liter of glucose. The production clearly depended on the amount of biotin added. This strain, 70, was derived by several steps of mutation from wild strain 2247 producing glutamate, successively via a citrate synthase-defective glutamate auxotroph, strain 214, a prototrophic revertant, strain 15-8, producing 10 g/liter of l-aspartic acid, and an S-(2-aminoethyl)-l-cysteine-resistant mutant, strain 1-231, having low pyruvate kinase and homoserine dehydrogenase and producing lysine. Strain 70, a methionine-insensitive revertant from strain 1-231, had a normal level of homoserine dehydrogenase but no pyruvate kinase. Its citrate synthase activity was about half that of the wild strain at saturated concentrations of the substrates with Michaelis constants for oxalacetate and acetyl-CoA of 110 and 6 times as high as those of the wild-type enzyme, respectively. The mutational step for these alterations in citrate synthase was strain 15-8. Phosphoenolpyruvate carboxylase of strain 70 showed 1.5-fold higher activity in the crude extract at saturated concentrations of phosphoenolpyruvate, a lower Michaelis constant (1.5mM).for the substrate, phosphoenolpyruvate, less sensitivity to the feedback inhibition by aspartate, and higher sensitivities to the activators, acetyl-CoA and fructose-1,6-bisphosphate, than those of the wild strain. The concentrations of aspartate giving 50% inhibition were 6.2- and 4.5-fold higher in the absence and presence of acetyl-CoA, respectively.