Protein Mobility Shifts Contribute to Gel Electrophoresis Liquid Chromatography Analysis

Profiling of cellular and subcellular proteomes by liquid chromatography with tandem mass spectrometry (MS) after fractionation by SDS-PAGE is referred to as GeLC (gel electrophoresis liquid chromatography)-MS. The GeLC approach decreases complexity within individual MS analyses by size fractionation with SDS-PAGE. SDS-PAGE is considered an excellent fractionation technique for intact proteins because of good resolution for proteins of all sizes, isoelectric points, and hydrophobicities. Additional information derived from the mobility of the intact proteins is available after an SDS-PAGE fractionation, but that information is usually not incorporated into the proteomic analysis. Any chemical or proteolytic modification of a protein that changes the mobility of that protein in the gel can be detected. The ability of SDS-PAGE to resolve proteins with chemical modifications has not been widely utilized within profiling experiments. In this work, we examined the ability of the GeLC-MS approach to help identify proteins that were modified after a small hairpin RNA-dependent knockdown in an experiment using stable isotope labeling by amino acids in cell culture-based quantitation.     

Gel Permeation Chromatography of Polysaccharides: Universal Calibration Curve

Changes in the crystallinity and polymorph of chitosan, which may affect its functionality, by heating (up to 200°C) its water suspension were studied by X-ray diffraction measurements, using tendon chitosan prepared by N-deacetylation of a crab tendon chitin, and chitosan powders with various degrees of polymerization (DPv = 1,720–12,600) and N-acetylation (zero to 26%). It was found that the presence of hydrated polymorphs or anhydrous crystals in a chitosan sample could be examined easily by measuring the powder diffraction pattern of a sample. Chitosan with a low molecular weight or low degree of N-acetylation was highly crystallized, especially in the anhydrous form that is considered to spoil chitosan’s functionality, by heating.     

Chromatography of Microbial Lipids by Centrifugation Through Microparticulate Gel

An improved apparatus and a procedure are described by which the migration of sample components in column chromatography is accelerated by centrifugal force, thereby making it possible to use beds of densely packed gel prepared with ultrafine silica. This technique was used to resolve components of certain lipid mixtures where other methods have failed, and it has been found generally useful as an adjunct to other methods for the fractionation of lipids. Biologically active phosphoglycolipids from Mycobacterium tuberculosis and a phosphatidylglycerol-like substance from Mycoplasma pneumoniae which formed single spots on thin-layer chromatographic plates were each found to contain a major and several minor components by centrifugal chromatography. The method enabled us to isolate individual components of Wax D from M. tuberculosis rather than a spectrum of components. Minor components were resolved which, although present in insufficient quantity to influence results of chemical analyses, may be responsible for biological activity. The apparatus provides an essentially closed system which reduces highly volatile solvents to minimal evaporation during the chromatographic process. Samples are applied in solution and are not allowed to dry on the columns until after separation has been achieved. Consequently, polar, labile microbial lipids can be resolved without the use of harsh reagents which destroy some of their properties. Single components may be harvested by cutting and removing appropriate segments of the larger chromatograms or by eluting them from the columns.     

The Heterogeneity of the 7S Soybean Protein by Sepharose Gel Chromatography and Disc Gel Electrophoresis

Two kinds of N-acetylmuramidase, M-1 and M-2 enzymes, that were isolated from the cultural broth of Stm. globisporus 1829, were remarkably different in amino acid composition, immunological properties and modes of lytic action from each other. The M-1 enzyme was composed of 186 amino acid residues of which two moles were of half cystine, while the M-2 enzyme was composed of 99 amino acid residues with no cysteine. The hydrolyzing action of the M-2 enzyme was suppressed by the presence of an O-acetyl group on muramic acid residues in the peptidoglycan moiety, while that of the M-l enzyme was independent of the presence of O-acetyl groups. However, the hydrolyzing activity of both enzymes was enhanced when some muramic acid residues were substituted with stem peptides containing alanine, isoglutamine and lysine.     

硅胶柱层析法从栀子中分离制备京尼平甙

采用硅胶柱层析法从中药山栀子中分离制备主要药效成分京尼平甙,色谱条件:常规柱(2.5×30cm),固定相:柱层析硅胶;流动相∶乙醇-石油醚(1∶5,1∶3)。样品通过薄层层析以及600~190nm波长扫描定性鉴定后,用高效液相色谱法(HPLC)检测纯度,结果表明纯度为97.6%。     

凝胶层析在发酵液中分离提纯透明质酸中的应用

采用葡聚糖凝胶G-100,以0.1 mol/L氯化钠溶液为洗脱剂,在优化的凝胶层析条件(层析柱高度30 cm、进样量2 ml、洗脱流速1 ml/4 min)下,对透明质酸发酵液进行分离纯化,得到了高纯度的透明质酸.HA提取率达到79.85%,蛋白质去除率为84.93%.     

Dissociation of Oxyhaemoglobin,Methaemoglobin and their Hybrid compared by Difference Gel Chromatography

ACCURATE measurement of the energy of protein subunit interaction^1–7 is an essential step in the study of cooperative and allosteric^8–10 effects in proteins. It is, however, more often the change of this energy on uptake of ligand or substrate which is the more important quantity to be determined, not its total value. Likewise it is the variation of interaction energy from protein to protein which is of more interest when phylogenetically related proteins are compared and again it is differences in energy of combination which determine how much hybrid is formed when closely related reversibly dissociating proteins are present in mixture in solution.     

影响逆流色谱分离效率的动力学因素

逆流色谱是一种无固态支撑物的液液色谱,它的色谱动力学过程有其特殊性,分析逆流色谱的动力学过程,推导适用于逆流色谱的速率方程式,结合实验,讨论影响色谱峰展宽的因素;理论推导和实验的结果都显示,管径、容量因子、质量传递系数和流动相液滴的直径和线速度是影响逆流色谱峰展宽的主要因素.     

高效凝胶色谱法测定聚乙烯亚胺的分子量及其分布

目的:探讨高效凝胶色谱法测定聚乙烯亚胺(PEI)及其衍生物的分子量及其分布.方法:采用Ultrahydrogel 250(300mmx7.8mm)色谱柱;以已知相对分子量的PEI为标样;醋酸-醋酸盐缓冲液(0.2mol/l醋酸-0.1mol/l醋酸钠)为流动相;柱温40℃;流速lml/min;示差折光检测器.结果:测得自制PEI衍生物的重均分子量(Mw)为5093,数均分子量(Mn)为2090、Z均分子量(Mz)为11031,分布宽度(Mw/Mn)为2.44.结论:高效凝胶色谱法操作简单、灵敏度高,适合于快速、简便地测定PEI及其衍生聚合物的分子量及其分布.     

硝酸银硅胶柱层析分离血浆不饱和脂肪酸

目的:利用硝酸银硅胶填料有效分离出血浆混合脂肪酸中的亚油酸。方法:通过改进的FOLCH法提取血浆总脂后,再采用皂化、酸化水解的方法将总脂转化为混合脂肪酸。用ghosh法将硅胶改性为硝酸银硅胶后,以亚油酸为对象,通过静态吸附试验了解硝酸银硅胶对不饱和脂肪酸的吸附特性,采用柱层析的方法分离血浆混合脂肪酸中的亚油酸。结果:血浆与有机溶剂在1∶5时既能有效萃取血浆总脂,用正己烷∶二氯甲烷∶乙醚=89∶10∶1作为洗脱剂,将洗脱液甲酯化后进行GC和GC-MS检测,硝酸银硅胶柱的洗脱液中亚油酸的纯度60.74%,硅胶柱的为23.65%,不饱和脂肪酸得到了较好的纯化。     

Isolation of Stem Bromelain by Affinity Chromatography and its Partial Characterization by Gel Electrophoresis

Abstract

Pineapple stem bromelain has been successfully isolated from an acetone powder of a crude plant extract by a single passage through a column of ?-aminocaproyl-D-tryptophan methyl ester coupled to Sepharose 4B. If organic mercury is present during all steps of the procedure, a single band with an apparent molecular weight of 23, 000 daltons is obtained after gel electrophoresis in 1% sodium dodecyl sulfate. Upon reduction with mercaptoethanol, this single species is converted into two chains of about 15, 000 and 8, 500 daltons.     

以魔芋葡甘聚糖凝胶为载体亲和层析分离纯化猪血SOD

以魔芋葡甘聚糖（ＫＧＭ）凝胶作为铜金属螯合亲和层析的载体一步亲和纯化猪血ＳＯＤ,得到电泳均一,比活为８６２２Ｕ／ｍｇ,纯化倍数为７７．８倍的ＳＯＤ,其回收率为８５．４％．探讨了魔芋葡甘聚糖凝胶作为亲和载体的可能性及前景．     

Gel Formation in Protein Amyloid Aggregation: A Physical Mechanism for Cytotoxicity

Amyloid fibers are associated with disease but have little chemical reactivity. We investigated the formation and structure of amyloids to identify potential mechanisms for their pathogenic effects. We incubated lysozyme 20 mg/ml at 55C and pH 2.5 in a glycine-HCl buffer and prepared slides on mica substrates for examination by atomic force microscopy. Structures observed early in the aggregation process included monomers, small colloidal aggregates, and amyloid fibers. Amyloid fibers were observed to further self-assemble by two mechanisms. Two or more fibers may merge together laterally to form a single fiber bundle, usually in the form of a helix. Alternatively, fibers may become bound at points where they cross, ultimately forming an apparently irreversible macromolecular network. As the fibers assemble into a continuous network, the colloidal suspension undergoes a transition from a Newtonian fluid into a viscoelastic gel. Addition of salt did not affect fiber formation but inhibits transition of fibers from linear to helical conformation, and accelerates gel formation. Based on our observations, we considered the effects of gel formation on biological transport. Analysis of network geometry indicates that amyloid gels will have negligible effects on diffusion of small molecules, but they prevent movement of colloidal-sized structures. Consequently gel formation within neurons could completely block movement of transport vesicles in neuronal processes. Forced convection of extracellular fluid is essential for the transport of nutrients and metabolic wastes in the brain. Amyloid gel in the extracellular space can essentially halt this convection because of its low permeability. These effects may provide a physical mechanism for the cytotoxicity of chemically inactive amyloid fibers in neurodegenerative disease.     

双向凝胶电泳缺陷胶及其原因

双向凝胶电泳是蛋白质组学研究中的关键技术之一,涉及较多的实验步骤和试剂,常出现缺陷胶而导致实验失败。从数千张电泳胶图中选取了21张典型的缺陷胶图,对它们进行了归类和总结,分析和讨论了形成缺陷胶的多种原因,提出了实验改进的方法和注意事项。     

亲和层析纯化肌质网Ca2+－ATP酶

建立了一种亲和层析纯化肌质网Ca²⁺-ATP酶的方法．用非离子型去污剂C₁₂E₈ 溶解肌质网,再通过反应红－120琼脂糖亲和层析柱使肌质网Ca²⁺-ATP酶纯度从粗品中的65％提高到99％,并具有较高ATP水解活性．经SDS－聚丙烯酰胺凝胶电泳检测,为电泳纯．     

含不可忽略缺失数据非线性再生散度模型参数的Bayes估计

给出协变量带有不可忽略缺失数据的非线性再生散度模型的Bayes方法,缺失数据机制由Logistic回归模型来确定.Gibbs抽样技术和Metropolis-Hastings算法(简称MH算法)用来得到模型参数、缺失数据机制中回归系数的联合Bayes估计,并用实例加以说明.     

蛋白质双向电泳图像分析

随着人类基因组计划的接近完成,蛋白质组（proteome）研究成为新的热点.其中高分辨率的双向电泳（two-dimensional gel electrophoresis,2-DE）技术使对组织或细胞的整个蛋白质组的综合分析成为可能.近年来这一技术有了很大的改进和提高,特别是图像分析系统,算法更为先进,功能日益强大,操作也更简便,为大规模研究提供了良好的工具.使用新一代的2D图像分析系统,对离体培养的雪旺氏细胞的蛋白质样品双向电泳结果进行了初步分析,探讨了在图像扫描、点检测、背景消除、匹配、结果报告和数据分析各步中的技术问题,并报告了进行2D图像分析的体会.