New Nematicidal Metabolites from a Fungus,Irpex lacteus

N-Benzoyl-l-alanine amidohydrolase was purified from a cell-free extract of Corynebacterium equi H-7 which was grown in a medium containing hippuric acid as the sole carbon source. The purified enzyme was homogeneous on polyacrylamide gel electrophoresis and SDS-polyacrylamide gel electrophoresis. The molecular weight was 230,000 and the enzyme consisted of six subunits, identical in molecular weight (approximately 40,000). The isoelectric point of the enzyme was pH 4.6. The optimum pH of the enzyme reaction was 8.0 and the enzyme was stable from pH 7.0 to 8.0. The enzyme hydrolyzed N-benzoyl-l-alanine, N-benzoylglycine, and N-benzoyl-l-aminobutyric acid. The Km values for these substrates were 4.3 mm, 6.7 mm, and 4.3 mm, respectively. The enzyme was activated by Co²⁺.     

Screening for Milk-clotting Enzyme from Basidiomycetes

Screening tests for aspartic proteinases with milk-clotting activity were done on basidiomycetes. Crude enzymes from 6 strains had a high ratio of milk-clotting activity to caseinolytic activity. These enzymes showed acidic pH optimum for proteolytic activity and were inhibited considerably by pepstatin, a specific aspartic proteinase inhibitor. Among them, the crude enzyme from Laetiporus sulphureus was more heat-labile than the other enzymes.     

The Disintegration of Soybean by a Cellulase Preparation from Irpex lacteus Fr. and the Enzyme Relating to It

It was found that there was a fairly well correlation between the soybean disintegrating activity (SD activity) of Driselase, a cellulase preparation from Irpex lacteus, and the improvement of feed efficiency caused from its supplementation to a ration.

When the seed coat of soybean was hydrolysed by Driselase, arabinose, galactose, and other aldoses were liberated; on the other hand, some ketoses such as fructose, sucrose, raffinose and such were detected as a result of the hydrolysis of the cotyledon. On the fractionation of Driselase with column chromatography, acid proteinase was appeared to be parallel, in a certain extent, with SD activity. These suggested that Driselase partially attacked the cell walls of the cotyledon and led to the leakage of intracellular substances such as ketoses and protein.

Since it was revealed, however, that only a kind of pectin hydrolase was detected in the fraction with high SD activity, the maceration of soybean by a pectin hydrolase was thought to be chiefly concerned with SD activity.     

Sodium Citrate as a Substitute for Fetal Calf Serum in the Micronucleus Test

The micronucleus test developed recently by Schmid and coworkers (Boller and Schmid 1970, Ledebur and Schmid 1973, Schmid 1976) is a rapid, convenient, and sensitive procedure for the detection of induced chromosome aberrations in vivo. It is now widely used for evaluating the mutagenic potential of drugs and other chemicals. The test involves the demonstration of micronuclei which result from lagging of acentric chromosome fragments or even of whole chromosomes during mitosis due to spindle disruption in the anucleate young erythrocytes of bone marrow smears (for details see Schmid 1976). Success or failure of the technique largely depends on the quality of the smear. Cell clumping and cell damage render the smear valueless. Schmid (1976) recommends the use of fetal calf serum for preparing the best smears. However, as he also noted, fetal calf serum is very expensive. Moreover it is not readily available in certain countries, particularly developing ones. It is not easy to procure heat inactivated human AB serum either, which Schmid has suggested as a good substitute for fetal calf serum. Difficulty in obtaining these important elements of the procedure is overcome to a great extent by the brief use of 1% sodium citrate solution at 20-25 C as a substitute for fetal calf serum.     

Purification and Characterization of a Pepstatin-insensitive Carboxyl Proteinase from Polyporus tulipiferae (Irpex lacteus)

A pepstatin-insensitive carboxyl proteinase of Polyporus tulipiferae (formerly Irpex lacteus) was purified by methods including affinity chromatography with chymostatin as the ligand.

Although the enzyme’s maximum proteolytic activity on hemoglobin was at pH 2.8, it was not affected by carboxyl proteinase inhibitors such as DAN, EPNP, and pepstatin. On the other hand, the enzyme was inhibited by chymostatin competitively and its Ki value was estimated to be 1.6×10^?5 m. The enzyme was very heat labile and was inactivated completely at pH 4.6 by heating at 45°C for 15min. Polyporus enzyme and Scytalidium lignicolum enzyme A₁ hydrolyzed the same peptide bond of Z-tetrapeptides, but their primary specificities were slightly different. Polyporus enzyme as well as Ganoderma lucidum enzyme contains histidine, and the amino acid compositions of Polyporus enzyme and other pepstatin-insensitive carboxyl proteinases resembled each other.     

Characterization of a Novel Dye-Decolorizing Peroxidase (DyP)-Type Enzyme from Irpex lacteus and Its Application in Enzymatic Hydrolysis of Wheat Straw

Irpex lacteus is a white rot basidiomycete proposed for a wide spectrum of biotechnological applications which presents an interesting, but still scarcely known, enzymatic oxidative system. Among these enzymes, the production, purification, and identification of a new dye-decolorizing peroxidase (DyP)-type enzyme, as well as its physico-chemical, spectroscopic, and catalytic properties, are described in the current work. According to its N-terminal sequence and peptide mass fingerprinting analyses, I. lacteus DyP showed high homology (>95%) with the hypothetical (not isolated or characterized) protein cpop21 from an unidentified species of the family Polyporaceae. The enzyme had a low optimal pH, was very stable to acid pH and temperature, and showed improved activity and stability at high H₂O₂ concentrations compared to other peroxidases. Other attractive features of I. lacteus DyP were its high catalytic efficiency oxidizing the recalcitrant anthraquinone and azo dyes assayed (k_cat/K_m of 1.6 × 10⁶ s^-1 M^-1) and its ability to oxidize nonphenolic aromatic compounds like veratryl alcohol. In addition, the effect of this DyP during the enzymatic hydrolysis of wheat straw was checked. The results suggest that I. lacteus DyP displayed a synergistic action with cellulases during the hydrolysis of wheat straw, increasing significantly the fermentable glucose recoveries from this substrate. These data show a promising biotechnological potential for this enzyme.     

Purification and properties of an exo-cellulase of Avicelase type from a wood-rotting fungus, Irpex lacteus (Polyporus tulipiferae).

A cellulase component of Avicelase type was obtained from Driselase, a commercial enzyme preparation from a wood-rotting fungus Irpex lacteus (Polyporus tulipiferae). It showed a single band on SDS-polyacrylamide electrophoresis. The amino acid composition of this cellulase resembled those of cellulase components of endo-type from the same fungus. However, it produced exclusively cellobiose from CMC as well as from water-insoluble celluloses such as Avicel or cotton at earlier stages of hydrolysis. In addition, the hydrolysis of CMC practically stopped after an initial rapid stage. The cellulase showed a strong synergistic action with an endo-cellulase of higher randomness (typical CMCase-type) in the hydrolysis of CMC as well as Avicel. In contrast to cellotriose and -tetraose, cellopentaose and -hexaose were attacked very rapidly, and only cellobiose was produced. These results suggest that the cellulase is an exo-type component. However, it mutarotated the products from cellopentaitol in the same direction as endo-cellulases. it represented a relatively large portion of the total cellulase activity, and may play an important role in the degradation of native cellulose in vivo.     

Purification, characterization, and mode of action of a rhamnogalacturonan hydrolase from Irpex lacteus, tolerant to an acetylated substrate

A novel rhamnogalacturonase (RGase) acting on an acetylated substrate was detected in the commercial preparation Driselase, an enzymatic mixture derived from the basidiomycete Irpex lacteus. The activity was isolated by hydrophobic interaction chromatography, gel filtration, and preparative isoelectric focusing, resulting in the isolation of five different rhamnogalacturonan hydrolases exhibiting various isoelectric points from 6.2 to 7.7. Sodium dodecyl sulfate polyacrylamide gel electrophoresis and mass spectrometry analyses after trypsin cleavage of the five fractions revealed that the five rhamnogalacturonases have a molar mass of 55 kDa without any divergences in the identified peptides. The RGase with a pI of 7.2 exhibited a pH optimum between 4.5 and 5 and a temperature optimum between 40°C and 50°C. Its mode of action was analyzed by mass spectrometry of the oligosaccharides produced after hydrolysis of acetylated and nonacetylated rhamnogalacturonan. Oligomers esterified by an acetyl group on the reducing galacturonic acid residue or fully acetylated were detected in the hydrolysate showing that the novel enzyme is able to bind acetylated galacturonic acid in its active site.     

Induction,Purification and Characterization of a Novel Manganese Peroxidase from Irpex lacteus CD2 and Its Application in the Decolorization of Different Types of Dye

Manganese peroxidase (MnP) is the one of the important ligninolytic enzymes produced by lignin-degrading fungi which has the great application value in the field of environmental biotechnology. Searching for new MnP with stronger tolerance to metal ions and organic solvents is important for the maximization of potential of MnP in the biodegradation of recalcitrant xenobiotics. In this study, it was found that oxalic acid, veratryl alcohol and 2,6-Dimehoxyphenol could stimulate the synthesis of MnP in the white-rot fungus Irpex lacteus CD2. A novel manganese peroxidase named as CD2-MnP was purified and characterized from this fungus. CD2-MnP had a strong capability for tolerating different metal ions such as Ca²⁺, Cd²⁺, Co²⁺, Mg²⁺, Ni²⁺ and Zn²⁺ as well as organic solvents such as methanol, ethanol, DMSO, ethylene glycol, isopropyl alcohol, butanediol and glycerin. The different types of dyes including the azo dye (Remazol Brilliant Violet 5R, Direct Red 5B), anthraquinone dye (Remazol Brilliant Blue R), indigo dye (Indigo Carmine) and triphenylmethane dye (Methyl Green) as well as simulated textile wastewater could be efficiently decolorized by CD2-MnP. CD2-MnP also had a strong ability of decolorizing different dyes with the coexistence of metal ions and organic solvents. In summary, CD2-MnP from Irpex lacteus CD2 could effectively degrade a broad range of synthetic dyes and exhibit a great potential for environmental biotechnology.     

An Acrylic Spray Used as a Substitute for Cover Glasses

It has been found that a plastic spray (“Krylon”, manufactured by Krylon, Inc., 2601 Broad Street, Philadelphia, Pa.) is suitable as a covering medium for stained, paraffin-embedded tissue sections. The material is supplied in an aerosol bomb type dispenser. The technic and advantages of using a plastic spray to replace both the usual mounting medium and cover glass are described below.     

Biochar as a Substitute for Vermiculite in Potting Mix for Hybrid Poplar

The purpose of this study was to evaluate biochar as a substitute for vermiculite in potting mixes for unrooted vegetative cuttings of hybrid poplar as represented by the clone ‘NM6’ (Populus nigra L. × Populus suaveolens Fischer subsp. maximowiczii A. Henry). We compared three treatments (peat moss (control), peat moss mixed with vermiculite, and peat moss mixed with biochar) at three times (pre-experiment, pre-fertilizer, and post-fertilizer). The biochar and vermiculite mixes had significantly higher cation exchange capacity (CEC) and pre-experiment exchangeable K than the control. Trees grown in the biochar and vermiculite mixes had significantly higher shoot K than the control at pre-fertilizer and post-fertilizer and significantly higher shoot and total biomass at post-fertilizer. The biochar mix was also associated with lower root biomass and higher shoot/root biomass ratio than the vermiculite mix at post-fertilizer. Vector analysis indicated that all treatments were deficient in N at pre-fertilizer, and the control was also deficient in K at pre-fertilizer and post-fertilizer. Linear regression confirmed that shoot biomass was strongly correlated (R²?=?0.97) with N and K uptake (in addition to initial cutting diameter), also, root biomass was strongly correlated (R²?=?0.96) with potting mix CEC (in addition to shoot biomass). Luxury consumption of K at pre-fertilizer indicates that the increases in shoot and total biomass observed with the biochar and vermiculite treatments arise from this nutrient being “pre-loaded” in both mixes. We conclude that biochar provides benefits equivalent to vermiculite in terms of key nutrient availability and total biomass productivity.     

Extracellular Oxidase from the Neonothopanus nambi Fungus as a Promising Enzyme for Analytical Applications

The Protein Journal - The extracellular enzyme with oxidase function was extracted from the Neonothopanus nambi luminescent fungus by using mild processing of mycelium with β-glucosidase and...     

Validity of Spinal Cord Examination as a Substitute Procedure for Routine Rabies Diagnosis

A significant portion of specimens received by this laboratory for rabies diagnosis is unsatisfactory for testing due to decomposition of the brain, or severe mutilation of the head when the animal was killed. Examination of the spinal cord was therefore explored as a possible alternative method when standard brain examination was not possible. In this study, both brain and spinal cord of 248 rabies-suspect animals were examined to assess the reliability of the spinal cord method. Brain and spinal cord of the 248 animals were examined by fluorescent antibody (FA) method, and mouse inoculation tests were performed on 247 brain specimens and 13 spinal cord specimens. By using both brain and spinal cord, 30 animals representing 8 species were diagnosed as rabid by FA, and 218, representing 11 species, were negative. There was 100% agreement between two procedures with FA as the criterion. This study showed that in cases where the usual examination is precluded due to brain destruction, the spinal cord procedure offers an equally reliable alternate method of diagnosis.     

Sustainability Assessment of Red Sand as a Substitute for Virgin Sand and Crushed Limestone

This article assesses the sustainability benefits of replacing virgin sand and crushed limestone with Red Sand for road construction and top dressing. The sustainability of Red Sand was assessed using a triple bottom line analysis that includes economic, social, and environmental objectives. Each of these objectives consists of a number of headline performance indicators, with each being the aggregate of key performance indicators that measure whether Red Sand applications foster or impede sustainability. Red Sand is a newly developed product that is expected to be commercially available in 2014. It is produced by washing and carbonating the coarse fraction of the residue produced by the Bayer alumina refining process. Our assessment indicates that replacing virgin sand and crushed limestone with Red Sand will provide a range of financial and environmental benefits. For example, some environmental impacts associated with using virgin sand and crushed limestone, such as loss of biodiversity and land degradation, can be avoided by substituting Red Sand. Also, the use of Red Sand for road construction and top dressing is expected to conserve land and raw materials for future generations, thus enhancing intergenerational social equity. The energy consumption associated with producing Red Sand is projected to be lower than that required to quarry virgin sand and crushed limestone, thereby conserving energy and reducing the overall greenhouse impact of road construction and top‐dressing applications that use virgin sand and crushed limestone. The greenhouse benefit of Red Sand is further enhanced by avoiding the loss of vegetation associated with sand and limestone quarrying. There are also intangible benefits expected from the substitution of Red Sand, including ecological, aesthetic, and recreational benefits associated with bushland conservation, a significant issue in areas surrounding metropolitan Perth.