Studies on woloszynskioid dinoflagellates IV: The genus Biecheleria gen. nov.

The well known freshwater dinoflagellate Woloszynskia pseudopalustris is transferred to the new genus Biecheleria , based on the very unusual structure of the eyespot (comprising a stack of cisternae), the apical apparatus of a single elongate amphiesma vesicle, the structure of the resting cyst, and molecular data. Biecheleria is phylogenetically related to Symbiodinium and Polarella of the family Suessiaceae. This family, which extends back to the Jurassic, is redefined with the eyespot (Type E sensu Moestrup and Daugbjerg) and apical apparatus as diagnostic features, unknown elsewhere in the dinoflagellates. Biecheleria also comprises the brackish water species Biecheleria baltica sp. nov. (presently identified as Woloszynskia halophila ) and the marine species Biecheleria natalensis (syn. Gymnodinium natalense ). Gymnodinium halophilum described in 1952 by B. Biecheler but apparently not subsequently refound, is transferred to Biecheleria . The Suessiaceae further includes the marine species Protodinium simplex , described by Lohmann in 1908 but shortly afterwards (1921) transferred to Gymnodinium by Kofoid and Swezy and subsequently known as Gymnodinium simplex . It only distantly related to Gymnodinium . A new family, the Borghiellaceae, is proposed for the sister group to the Suessiaceae, based on eyespot structure (Type B of Moestrup and Daugbjerg), the morphology of the apical apparatus (if present), and molecular data. It presently comprises the genera Baldinia and Borghiella . Cells of Biecheleria pseudopalustris and B. baltica contain a microtubular strand (msp) associated with vesicles containing opaque material. Such structures are known in other dinoflagellates to serve as a peduncle, indicating that the two species may be mixotrophic.     

拟棘壳孢属的一新种及本属已知种的检索表

本文报道分离自贵州省土壤的拟棘壳孢属Pyrenochaetopsis真菌一新种,对该种结合形态特征及分子系统学分析明确其分类地位,命名为土栖拟棘壳孢Pyrenochaetopsis terricola;编制了该属13个已知种的分种检索表。研究标本保存于贵州大学植物病理学实验室（HGUP）和中国微生物菌种保藏管理委员会普通微生物中心（CGMCC）。     

Towards a new classification of the giant paraphyletic genus Cyperus (Cyperaceae): phylogenetic relationships and generic delimitation in C4 Cyperus

Maximum likelihood and Bayesian inference analyses of nuclear ribosomal DNA (ETS1f) and plastid DNA (rpl32‐trnL, trnH‐psbA) sequence data are presented for ‘C₄ Cyperus’ (Cyperaceae). The term ‘C₄ Cyperus’ encompasses all species of Cyperus s.l. that use C₄ photosynthesis linked with chlorocyperoid vegetative anatomy. Sampling comprises 107 specimens of 104 different taxa, including many of the subdivisions of C₄ Cyperus s.s. and all C₄ segregate genera (Alinula, Ascolepis, Kyllinga, Lipocarpha, Pycreus, Queenslandiella, Remirea, Sphaerocyperus and Volkiella). According to our results, C₄ Cyperus is a well‐supported monophyletic clade nested in C₃ Cyperus. Despite the lack of resolution along the backbone of the C₄ Cyperus clade and for some internal branches, several well‐supported clades can be distinguished. The first clade in C₄ Cyperus is formed by Cyperus cuspidatus and C. waterloti. Other recognizable and well‐supported clades correspond to segregate genera, i.e. Ascolepis, Lipocarpha including Volkiella, and Kyllinga. Species of C₄ Cyperus s.s. form a core grade in which the C₄ segregate genera are embedded. Pycreus, the largest segregate genus composed of c. 120 species, is not monophyletic as it includes several C₄ species of Cyperus s.s. This study establishes a phylogenetic framework for revising the classification and character evolution in Cyperus s.l. © 2013 The Linnean Society of London     

Intergeneric phylogenetic relationships in catfishes of the Loricariinae (Siluriformes: Loricariidae), with the description of Fonchiiloricaria nanodon: a new genus and species from Peru

Recent investigations in the upper Río Huallaga in Peru revealed the presence of an intriguing species of the Loricariinae. To characterize and place this species within the evolutionary tree of the subfamily, a molecular phylogeny of this group was inferred based on the 12S and 16S mitochondrial genes and the nuclear gene F-reticulon4. The phylogeny indicated that this distinctive species was a member of the subtribe Loricariina. Given its phylogenetic placement, and its unusual morphology, this species is described as a new genus and new species of Loricariinae: Fonchiiloricaria nanodon. This new taxon is diagnosed by usually possessing one to three premaxillary teeth that are greatly reduced; lips with globular papillae on the surface; the distal margin of lower lip bearing short, triangular filaments; the premaxilla greatly reduced; the abdomen completely covered by plates, with the plates between lateral abdominal plates small and rhombic; a caudal fin with 14 rays; the orbital notch absent; five lateral series of plates; dorsal-fin spinelet absent; preanal plate present, large and solid, and of irregular, polygonal shape, the caudal peduncle becoming more compressed posteriorly for the last seven to 10 plates.     

Higher‐level phylogenetic affinities of the Neotropical genus Mastigodryas Amaral, 1934 (Serpentes: Colubridae), species‐group definition and description of a new genus for Mastigodryas bifossatus

Most Neotropical colubrid snakes belong to a single, well‐supported lineage. Relationships between the major constituents of this clade remain. Here, we explore the phylogenetic relationships of Mastigodryas and its affinities to other Neotropical colubrid genera by combining DNA and morphological data. Analyses demonstrate that the concatenation of multiple individuals into a single terminal can mask the detection of new taxa. Further, non‐random missing data and/or taxa in some empirical datasets can bias species tree analyses more than concatenation approaches. Our results place Mastigodryas in a strongly supported clade that includes Drymarchon, Rhinobothryum, Drymoluber, Simophis and Leptodrymus. Mastigodryas bifossatus is more closely related to species of Drymoluber and Simophis than to its congeners. Thus, we erect a new genus to accommodate it and recover a monophyletic Mastigodryas. We highlight the importance of the use of morphological characters to diagnose suprageneric clades by showing that some key external and hemipenial characteristics are phylogenetically informative.     

Phylogenetic relationships of the enigmatic land snail genus Prestonella: the missing African element in the Gondwanan superfamily Orthalicoidea (Mollusca: Stylommatophora)

The land snail superfamily Orthalicoidea, although generally assumed to be of Gondwanan origin, is considered by the majority of recent authors to be absent from the African continent. However, two poorly-known African genera, Aillya and Prestonella , have historically been referred to the orthalicoid family Bulimulidae s.l. Anatomical study of Aillya has subsequently shown it to be morphologically distinct from the Bulimulidae and referable to a family of its own, outside the Orthalicoidea, but Prestonella has remained an enigmatic taxon of unknown affinity. Using molecular and morphological evidence, we demonstrate conclusively that Prestonella is indeed a member of the Bulimulidae s.l. We thus confirm that this family is represented in Africa, and that it has a classical disjunct, tri-continental southern distribution. Thus, either the origin of the family must at the least predate the separation of Africa and South America in the Mid Cretaceous (under a vicariance scenario) or there must have been subsequent dispersal between the isolated Gondwanan fragments. In view of the limited dispersal ability of terrestrial snails, we consider the former more likely. Anatomically, Prestonella exhibits many character states thought to be plesiomorphic, suggesting a relationship with the subfamily Bulimulinae. Bayesian analysis of nuclear DNA sequence data places it as sister group (posterior probability = 1.0) to an Australasian clade comprising Bothriembryon and Placostylus . However, taxon sampling within the Orthalicoidea is currently inadequate to permit meaningful resolution of subfamilial affinity using molecular data. Similarly, although those orthalicoid taxa for which molecular data are available comprise a well-supported clade, the relationships of this clade to other stylommatophoran clades remain unresolved.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 96 , 203–221.     

Evolutionary significance of oral morphology in the carnivorous tadpoles of tiger frogs, genus Hoplobatrachus (Ranidae)

We describe the larval stages of three species of the Asian-African tiger frogs Hoplobatrachus chinensis, H. occipitalis and H. tigerinus . The tadpoles of all three species are very similar, with peculiar oral features: (1) double rows of needle-like labial teeth, (2) strong emarginations on the large jaw sheaths and (3) keratinized spurs on the buccal floor. Characters 1 and 2 (and perhaps 3) are probably related to the carnivorous habits of these tadpoles. A molecular phylogeny based on 2430 base pairs of two nuclear and four mitochondrial genes corroborated monophyly of Asian and African Hoplobatrachus, and identified Euphlyctis as their sister group. Tadpoles of the latter genus lack buccal spurs and double labial tooth rows but share large jaw sheaths, the upper with a medial projection. Therefore, the common ancestor of Euphlyctis and Hoplobatrachus probably was also characterized by this state, and may have been facultatively carnivorous. Further carnivorous specializations in Hoplobatrachus could explain why tiger frogs have been so successful in populating arid environments where ponds are at high risk of desiccation. Larval morphology may prove to be the key innovation which enabled them to disperse, in the Late Cenozoic, into their current very wide distribution area in Asia and Africa.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 81 , 171–181.     

Genetic diversity of parasitic dinoflagellates in the genus amoebophrya and its relationship to parasite biology and biogeography

We determined 18S rRNA gene sequences of Amoebophrya strains infecting the thecate dinoflagellates Alexandrium affine and Gonyaulax polygramma from Korean coastal waters and compared those data with previously reported sequences of Amoebophrya from cultures, infected cells concentrated from field samples, and environmental 18S rRNA gene sequences obtained from a variety of marine environments. Further, we used these data to examine genetic diversity in Amoebophrya strains relative to geographic origin, host phylogeny, site of infection, and host specificity. In our analyses of known dinoflagellate taxa, the 13 available Amoebophrya sequences clustered together within the dinoflagellates as three groups forming a monophyletic group with high bootstrap support (maximum likelihood, ML: 100%) or a posterior probability (PP) of 1. When the Amoebophrya sequences were analyzed along with environmental sequences associated with Marine Alveolate Group II, nine subgroups formed a monophyletic group with high bootstrap support (ML: 100%) and PP of 1. Sequences known to be from Amoebophrya spp. infecting dinoflagellate hosts were distributed in seven of those subgroups. Despite differences in host species and geographic origin (Korea, United States, and Europe), Amoebophrya strains (Group II) from Gymnodinium instriatum, A. affine, Ceratium tripos (AY208892), Prorocentrum micans, and Ceratium lineatum grouped together by all of our tree construction methods, even after adding the environmental sequences. By contrast, strains within Groups I and III divided into several lineages following inclusion of environmental sequences. While Amoebophrya strains within Group II mostly developed within the host cytoplasm, strains in Groups I and III formed infections inside the host nucleus, a trait that appeared across several of the subgroups. Host specificity varied from moderately to extremely species-specific within groups, including Group II. Taken together, our results imply that genetic diversity in Amoebophrya strains does not always reflect parasite biology or biogeography.     

Light and Electron Microscopic Description of Sphaerospora dicentrarchi N. Sp. (Myxosporea: Sphaerosporidae) from Wild and Cultured Sea Bass, Dicentrarchus labrax L.

ABSTRACT. A new myxosporean, Sphaerospora dicentrarchi n. sp., was found in numerous organs of wild and cultured sea bass ( Dicentrarchus labrax L.). It is distinguished from all previously reported Sphaerospora spp. by the shape and small size of the spores, location in the host and its geographical distribution. Prevalence of infection was 100% and 83.5% in wild and cultured fish, respectively. Outstanding ultrastructural features are the presence of a binucleate sporoplasm, valvogenic spheroidal structures and capsulogenic lipid inclusions. Other data concerning ultrastructure and sporogenesis are presented.     

Two new species that are likely to represent the most basal clade of the genus Trichadenotecnum (Psocoptera: Psocidae)

Two new Trichadenotecnum species, T. corniculum and T. germinatum, were described from Japan. These species were considered to compose a monophyletic group newly defined here as the corniculum group. Judging from morphology of male terminalia, the corniculum group was considered to represent the basal most clade of the genus Trichadenotecnum.     

Zschokkella mugilis N. Sp. (Myxosporea: Bivalvulida) from Mullets (Teleostei: Mugilidae) of Mediterranean Waters: Light and Electron Microscopic Description

A new Myxosporea, Zschokkella mugilis n. sp., was found in the gall bladder of several mugilids. It is distinguished from all previously reported Zschokkella from mugilids by the absence of valve ornamentation and from other species by the size of the spores. Prevalence of infection was 62.5% for Mugil capito, 70% for M. cephalus and 64.3% for Liza saliens. Plasmodia with rhizoids attached to epithelial cells appeared to compromise the host as evidenced in light and transmission electron micrographs presented herein. General ultrastructure and disporous sporogenesis of Z. mugilis resembled other Myxosporeans, but sporogonic cells did not seem to be formed in pansporoblasts.     

A morphological and molecular assessment of the genus Sinotubimorpha (Halymeniaceae, Rhodophyta)

A critical reassessment of the morphological features of two closely related red algal genera,Grateloupia C.Agardh and Sinotubimorpha W.X.Li & Z.F.Ding (Halymeniaceae),pointed out that members of the t...     

指定木霉属三个种的附加模式并报道中国新记录种

对来自我国南方的木霉属标本进行分类学研究,首次发现灵芝木霉T. ganodermatis、异味木霉T. ingratum 和特里克木霉T. trixiae的有性阶段,对它们进行描述并指定3个种的附加模式。报道了3个中国新记录种：新厚木霉Trichoderma neocrassum、垫状木霉T. pulvinatum和塞缪尔斯木霉T. samuelsii、提供了它们的形态描述和图示。基于RPB2和TEF1基因序列的系统发育分析确定了上述种的系统发育位置。建立一个新名称取代晚出同名Trichoderma crystalligenum W.T. Qin & W.Y. Zhuang。     

A morphological and molecular assessment of the genus Prionitis J. Agardh (Halymeniaceae, Rhodophyta)

A critical reassessment of the morphological features of two closely related red algal genera, Grateloupia C. Agardh and Prionitis J. Agardh (Halymeniaceae), shows that members of the two genera share very similar reproductive (including the Grateloupia‐type auxiliary‐cell ampullae) and vegetative characters. Diagnostic features hitherto used for distinguishing these two genera, the texture of blades (lubricous to leathery in Grateloupia vs cartilaginous in Prionitis) and the position of reproductive structures (scattered over the entire blade in Grateloupia vs confined to particular portions of the blade in Prionitis), are continuous across some 75 species of both genera, thus making it difficult to draw a clear‐cut distinction between the two genera. In ribulose‐1,5‐bisphosphate carboxylase/oxygenase gene (rbcL) sequence analyses, the species of Grateloupia and Prionitis, including the two generitypes, constitute a large monophyletic clade in the Halymeniaceae. It is therefore proposed that Prionitis be included in the synonymy under Grateloupia and the appropriate combinations are proposed.     

Molecular genetic evidence that dinoflagellates belonging to the genus Symbiodinium freudenthal are haploid

Microscopic and cytological evidence suggest that many dinoflagellates possess a haploid nuclear phase. However, the ploidy of a number of dinoflagellates remains unknown, and molecular genetic support for haploidy in this group has been lacking. To elucidate the ploidy of symbiotic dinoflagellates belonging to the genus Symbiodinium, we used five polymorphic microsatellites to examine populations harbored by the Caribbean gorgonians Plexaura kuna and Pseudopterogorgia elisabethae; we also studied a series of Symbiodinium cultures. In 690 out of 728 Symbiodinium samples in hospite (95% of the cases) and in all 45 Symbiodinium cultures, only a single allele was recovered per locus. Statistical testing of the Symbiodinium populations harbored by P. elisabethae revealed that the observed genotype frequencies deviate significantly from those expected under Hardy-Weinberg equilibrium. Taken together, our results confirm that, in the vegetative life stage, members of Symbiodinium, both cultured and in hospite, are haploid. Furthermore, based on the phylogenetics of the dinoflagellates, haploidy in vegetative cells appears to be an ancestral trait that extends to all 2,000 extant species of these important unicellular protists.     

Molecular diversity of the syndinean genus Euduboscquella based on single-cell PCR analysis

The genus Euduboscquella is one of a few described genera within the syndinean dinoflagellates, an enigmatic lineage with abundant diversity in marine environmental clone libraries based on small subunit (SSU) rRNA. The region composed of the SSU through to the partial large subunit (LSU) rRNA was determined from 40 individual tintinnid ciliate loricae infected with Euduboscquella sampled from eight surface water sites in the Northern Hemisphere, producing seven distinct SSU sequences. The corresponding host SSU rRNA region was also amplified from eight host species. The SSU tree of Euduboscquella and syndinean group I sequences from environmental clones had seven well-supported clades and one poorly supported clade across data sets from 57 to 692 total sequences. The genus Euduboscquella consistently formed a supported monophyletic clade within a single subclade of group I sequences. For most parasites with identical SSU sequences, the more variable internal transcribed spacer (ITS) to LSU rRNA regions were polymorphic at 3 to 10 sites. However, in E. cachoni there was variation between ITS to LSU copies at up to 20 sites within an individual, while in a parasite of Tintinnopsis spp., variation between different individuals ranged up to 19 polymorphic sites. However, applying the compensatory base change model to the ITS2 sequences suggested no compensatory changes within or between individuals with the same SSU sequence, while one to four compensatory changes between individuals with similar but not identical SSU sequences were found. Comparisons between host and parasite phylogenies do not suggest a simple pattern of host or parasite specificity.     

The phylogeny of the annelid genus Ophryotrocha (Dorvilleidae)

Ophyotrocha is easy to keep in the laboratory and has therefore been used in several studies of evolution and speciation. The phylogenetic relationships within the group are, however, still not clear and morphological and molecular data are contradictory. Here we attempt to shed light on the phylogeny by adding an additional gene (cytochrome c oxidase subunit I) to the previous analyses of the group. However, the results are still incongruent with the results from the morphological data. We also include a species of the genus Iphitime, and conclude that this species falls within the Ophryotrocha clade. The implications are discussed.