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1.
Denitrification by Chromobacterium violaceum   总被引:2,自引:0,他引:2       下载免费PDF全文
One host (Rana catesbiana)-associated and two free-living mesophilic strains of bacteria with violet pigmentation and biochemical characteristics of Chromobacterium violaceum were isolated from freshwater habitats. Cells of each freshly isolated strain and of strain ATCC 12472 (the neotype strain) grew anaerobically with glucose as the sole carbon and energy source. The major fermentation products of cells grown in Trypticase soy broth (BBL Microbiology Systems, Cockeysville, Md.) supplemented with glucose included acetate, small amounts of propionate, lactate, and pyruvate. The final cell yield and culture growth rate of each strain cultured anaerobically in this medium increased approximately twofold with the addition of 2 mM NaNO3. Final growth yields increased in direct proportion to the quantity of added NaNO3 over the range of 0.5 to 5 mM. Each strain reduced NO3, producing NO2, NO, and N2O. NO2 accumulated transiently. With 2 mM NaNO3 in the medium, N2O made up 85 to 98% of the N product recovered with each strain. N-oxides were recovered in the same quantity and distribution whether 0.01 atm (ca. 1 kPa) of C2H2 (added to block N2O reduction) was present or not. Neither N2 production nor gas accumulation was detected during NO3 reduction by growing cells. Cell growth in media containing 0.5 to 5 mM NaNO2 in lieu of NaNO3 was delayed, and although N2O was produced by the end of growth, NO2 -containing media did not support growth to an extent greater than did medium lacking NO3 or NO2. The data indicate that C. violaceum cells ferment glucose or denitrify, terminating denitrification with the production of N2O, and that NO2 reduction to N2O is not coupled to growth but may serve as a detoxification mechanism. No strain detectably fixed N2 (reduced C2H2).  相似文献   

2.
Role of Chemotaxis in the Ecology of Denitrifiers   总被引:4,自引:2,他引:2       下载免费PDF全文
A modification of the Adler capillary assay was used to evaluate the chemotactic responses of several denitrifiers to nitrate and nitrite. Strong positive chemotaxis was observed to NO3 and NO2 by soil isolates of Pseudomonas aeruginosa, Pseudomonas fluorescens, and Pseudomonas stutzeri, with the peak response occurring at 10−3 M for both attractants. In addition, a strong chemoattraction to serine (peak response at 10−2 M), tryptone, and a soil extract, but not to NH4+, was observed for all denitrifiers tested. Chemotaxis was not dependent on a previous growth on NO3, NO2, or a soil extract, and the chemoattraction to NO3 occurred when the bacteria were grown aerobically or anaerobically. However, the best response to NO3 was usually observed when the cells were grown aerobically with 10 mM NO3 in the growth medium. Capillary tubes containing 103 M NO3 submerged into soil-water mixtures elicited a significant chemotactic response to NO3 by the indigenous soil microflora, the majority of which were Pseudomonas spp. A chemotactic strain of P. fluorescens also was shown to survive significantly better in aerobic and anaerobic soils than was a nonmotile strain of the same species. Both strains had equal growth rates in liquid cultures. Thus, chemotaxis may be one mechanism by which denitrifiers successfully compete for available NO3 and NO2, and which may facilitate the survival of naturally occurring populations of some denitrifiers.  相似文献   

3.
Kinetics of Denitrifying Growth by Fast-Growing Cowpea Rhizobia   总被引:3,自引:2,他引:1       下载免费PDF全文
Two fast-growing strains of cowpea rhizobia (A26 and A28) were found to grow anaerobically at the expense of NO3, NO2, and N2O as terminal electron acceptors. The two major differences between aerobic and denitrifying growth were lower yield coefficients (Y) and higher saturation constants (Ks) with nitrogenous oxides as electron acceptors. When grown aerobically, A26 and A28 adhered to Monod kinetics, respectively, as follows: Ks, 3.4 and 3.8 μM; Y, 16.0 and 14.0 g · cells eq−1; μmax, 0.41 and 0.33 h−1. Yield coefficients for denitrifying growth ranged from 40 to 70% of those for aerobic growth. Only A26 adhered to Monod kinetics with respect to growth on all three nitrogenous oxides. The apparent Ks values were 41, 270, and 460 μM for nitrous oxide, nitrate, and nitrite, respectively; the Ks for A28 grown on nitrate was 250 μM. The results are kinetically and thermodynamically consistent in explaining why O2 is the preferred electron acceptor. Although no definitive conclusions could be drawn regarding preferential utilization of nitrogenous oxides, nitrite was inhibitory to both strains and effected slower growth. However, growth rates were identical (μmax, 0.41 h−1) when A26 was grown with either O2 or NO3 as an electron acceptor and were only slightly reduced when A28 was grown with NO3 (0.25 h−1) as opposed to O2 (0.33 h−1).  相似文献   

4.
A more sensitive analytical method for NO3 was developed based on the conversion of NO3 to N2O by a denitrifier that could not reduce N2O further. The improved detectability resulted from the high sensitivity of the 63Ni electron capture gas chromatographic detector for N2O and the purification of the nitrogen afforded by the transformation of the N to a gaseous product with a low atmospheric background. The selected denitrifier quantitatively converted NO3 to N2O within 10 min. The optimum measurement range was from 0.5 to 50 ppb (50 μg/liter) of NO3 N, and the detection limit was 0.2 ppb of N. The values measured by the denitrifier method compared well with those measured by the high-pressure liquid chromatographic UV method above 2 ppb of N, which is the detection limit of the latter method. It should be possible to analyze all types of samples for nitrate, except those with inhibiting substances, by this method. To illustrate the use of the denitrifier method, NO3 concentrations of <2 ppb of NO3 N were measured in distilled and deionized purified water samples and in anaerobic lake water samples, but were not detected at the surface of the sediment. The denitrifier method was also used to measure the atom% of 15N in NO3. This method avoids the incomplete reduction and contamination of the NO3 -N by the NH4+ and N2 pools which can occur by the conventional method of 15NO3 analysis. N2O-producing denitrifier strains were also used to measure the apparent Km values for NO3 use by these organisms. Analysis of N2O production by use of a progress curve yielded Km values of 1.7 and 1.8 μM NO3 for the two denitrifier strains studied.  相似文献   

5.
Heterotrophic bacteria, yeasts, fungi, plants, and animal breath were investigated as possible sources of N2O. Microbes found to produce N2O from NO3 but not consume it were: (i) all of the nitrate-respiring bacteria examined, including strains of Escherichia, Serratia, Klebsiella, Enterobacter, Erwinia, and Bacillus; (ii) one of the assimilatory nitrate-reducing bacteria examined, Azotobacter vinelandii, but not Azotobacter macrocytogenes or Acinetobacter sp.; and (iii) some but not all of the assimilatory nitrate-reducing yeasts and fungi, including strains of Hansenula, Rhodotorula, Aspergillus, Alternaria, and Fusarium. The NO3-reducing obligate anaerobe Clostridium KDHS2 did not produce N2O. Production of N2O occurred only in stationary phase. The nitrate-respiring bacteria produced much more N2O than the other organisms, with yields of N2O ranging from 3 to 36% of 3.5 mM NO3. Production of N2O was apparently not regulated by ammonium and was not restricted to aerobic or anaerobic conditions. Plants do not appear to produce N2O, although N2O was found to arise from some damaged plant tops, probably due to microbial growth. Concentrations of N2O above the ambient level in the atmosphere were found in human breath and appeared to increase after a meal of high-nitrate food.  相似文献   

6.
The capacity for dissimilatory reduction of NO3 to N2 (N2O) and NH4+ was measured in 15NO3-amended marine sediment. Incubation with acetylene (7 × 10−3 atmospheres [normal]) caused accumulation of N2O in the sediment. The rate of N2O production equaled the rate of N2 production in samples without acetylene. Complete inhibition of the reduction of N2O to N2 suggests that the “acetylene blockage technique” is applicable to assays for denitrification in marine sediments. The capacity for reduction of NO3 by denitrification decreased rapidly with depth in the sediment, whereas the capacity for reduction of NO3 to NH4+ was significant also in deeper layers. The data suggested that the latter process may be equally as significant as denitrification in the turnover of NO3 in marine sediments.  相似文献   

7.
Microbial Fe reduction in acetate- and succinate-containing enrichment cultures initiated with an estuarine sediment inoculum was studied. Fe reduction was unaffected when SO42− reduction was inhibited by MoO42−, indicating that both processes could occur independently. Bacterially produced sulfide precipitated as FeS but was not completely responsible for Fe reduction. The separation of oxidized Fe particles from bacteria by dialysis tubing demonstrated that direct bacterial contact was necessary for Fe reduction. Fe reduction in cultures amended with NO3 was delayed until NO3 and NO2 were removed. However, bacterial attachment to oxidized Fe particles in NO3-amended cultures occurred early during growth in a manner similar to NO3-free cultures. During late stages of growth, bacteria not attached to Fe particles became pale and swollen, while attached cells remained bright blue when examined by 4′,6-diamidine-2-phenylindole epifluo-rescence microscopy. The presence of added oxidized Mn had no effect on Fe reduction. The results suggested that enzymatic Fe reduction was responsible for reducing Fe in these cultures even in the presence of sulfide and that cells incapable of Fe reduction became unhealthy when Fe(III) was the only available electron acceptor.  相似文献   

8.
Nitrate (NO3) and nitrite (NO2) are the physiological sources of nitric oxide (NO), a key biological messenger molecule. NO3/NO2 exerts a beneficial impact on NO homeostasis and its related cardiovascular functions. To visualize the physiological dynamics of NO3/NO2 for assessing the precise roles of these anions, we developed a genetically encoded intermolecular fluorescence resonance energy transfer (FRET)-based indicator, named sNOOOpy (sensor for NO3/NO2 in physiology), by employing NO3/NO2-induced dissociation of NasST involved in the denitrification system of rhizobia. The in vitro use of sNOOOpy shows high specificity for NO3 and NO2, and its FRET signal is changed in response to NO3/NO2 in the micromolar range. Furthermore, both an increase and decrease in cellular NO3 concentration can be detected. sNOOOpy is very simple and potentially applicable to a wide variety of living cells and is expected to provide insights into NO3/NO2 dynamics in various organisms, including plants and animals.  相似文献   

9.
We adapted a method for the rapid screening of colonies of free-living Rhizobium japonicum for hydrogenase activity to determine the hydrogenase status of individual soybean nodules. Crude bacteroid suspensions from nodules containing strains known to be hydrogen uptake positive (Hup+) caused a localized decolorization of filter paper disks, whereas suspensions from nodules arising from inoculation with hydrogen uptake-negative (Hup) mutants or strains did not decolorize the disks. The reliability of the method was demonstrated by its successful application to 29 slow-growing rhizobia. The Hup phenotype on methylene blue filters agreed with that determined amperometrically with either methylene blue or oxygen as the electron acceptor.  相似文献   

10.
Until recently, denitrification was thought to be the only significant pathway for N2 formation and, in turn, the removal of nitrogen in aquatic sediments. The discovery of anaerobic ammonium oxidation in the laboratory suggested that alternative metabolisms might be present in the environment. By using a combination of 15N-labeled NH4+, NO3, and NO2 (and 14N analogues), production of 29N2 and 30N2 was measured in anaerobic sediment slurries from six sites along the Thames estuary. The production of 29N2 in the presence of 15NH4+ and either 14NO3 or 14NO2 confirmed the presence of anaerobic ammonium oxidation, with the stoichiometry of the reaction indicating that the oxidation was coupled to the reduction of NO2. Anaerobic ammonium oxidation proceeded at equal rates via either the direct reduction of NO2 or indirect reduction, following the initial reduction of NO3. Whether NO2 was directly present at 800 μM or it accumulated at 3 to 20 μM (from the reduction of NO3), the rate of 29N2 formation was not affected, which suggested that anaerobic ammonium oxidation was saturated at low concentrations of NO2. We observed a shift in the significance of anaerobic ammonium oxidation to N2 formation relative to denitrification, from 8% near the head of the estuary to less than 1% at the coast. The relative importance of anaerobic ammonium oxidation was positively correlated (P < 0.05) with sediment organic content. This report of anaerobic ammonium oxidation in organically enriched estuarine sediments, though in contrast to a recent report on continental shelf sediments, confirms the presence of this novel metabolism in another aquatic sediment system.  相似文献   

11.
Denitrification in San Francisco Bay Intertidal Sediments   总被引:23,自引:17,他引:6       下载免费PDF全文
The acetylene block technique was employed to study denitrification in intertidal estuarine sediments. Addition of nitrate to sediment slurries stimulated denitrification. During the dry season, sediment-slurry denitrification rates displayed Michaelis-Menten kinetics, and ambient NO3 + NO2 concentrations (≤26 μM) were below the apparent Km (50 μM) for nitrate. During the rainy season, when ambient NO3 + NO2 concentrations were higher (37 to 89 μM), an accurate estimate of the Km could not be obtained. Endogenous denitrification activity was confined to the upper 3 cm of the sediment column. However, the addition of nitrate to deeper sediments demonstrated immediate N2O production, and potential activity existed at all depths sampled (the deepest was 15 cm). Loss of N2O in the presence of C2H2 was sometimes observed during these short-term sediment incubations. Experiments with sediment slurries and washed cell suspensions of a marine pseudomonad confirmed that this N2O loss was caused by incomplete blockage of N2O reductase by C2H2 at low nitrate concentrations. Areal estimates of denitrification (in the absence of added nitrate) ranged from 0.8 to 1.2 μmol of N2 m−2 h−1 (for undisturbed sediments) to 17 to 280 μmol of N2 m−2 h−1 (for shaken sediment slurries).  相似文献   

12.
13.
A recent study (D. C. Cooper, F. W. Picardal, A. Schimmelmann, and A. J. Coby, Appl. Environ. Microbiol. 69:3517-3525, 2003) has shown that NO3 and NO2 (NOx) reduction by Shewanella putrefaciens 200 is inhibited in the presence of goethite. The hypothetical mechanism offered to explain this finding involved the formation of a Fe(III) (hydr)oxide coating on the cell via the surface-catalyzed, abiotic reaction between Fe2+ and NO2. This coating could then inhibit reduction of NOx by physically blocking transport into the cell. Although the data in the previous study were consistent with such an explanation, the hypothesis was largely speculative. In the current work, this hypothesis was tested and its environmental significance explored through a number of experiments. The inhibition of ~3 mM NO3 reduction was observed during reduction of a variety of Fe(III) (hydr)oxides, including goethite, hematite, and an iron-bearing, natural sediment. Inhibition of oxygen and fumarate reduction was observed following treatment of cells with Fe2+ and NO2, demonstrating that utilization of other soluble electron acceptors could also be inhibited. Previous adsorption of Fe2+ onto Paracoccus denitrificans inhibited NOx reduction, showing that Fe(II) can reduce rates of soluble electron acceptor utilization by non-iron-reducing bacteria. NO2 was chemically reduced to N2O by goethite or cell-sorbed Fe2+, but not at appreciable rates by aqueous Fe2+. Transmission and scanning electron microscopy showed an electron-dense, Fe-enriched coating on cells treated with Fe2+ and NO2. The formation and effects of such coatings underscore the complexity of the biogeochemical reactions that occur in the subsurface.  相似文献   

14.
Aquaspirillum magnetotacticum MS-1 grew microaerobically but not anaerobically with NO3 or NH4+ as the sole nitrogen source. Nevertheless, cell yields varied directly with NO3 concentration under microaerobic conditions. Products of NO3 reduction included NH4+, N2O, NO, and N2. NO2 and NH2OH, each toxic to cells at 0.2 mM, were not detected as products of cells growing on NO3. NO3 reduction to NH4+ was completely repressed by the addition of 2 mM NH4+ to the growth medium, whereas NO3 reduction to N2O or to N2 was not. C2H2 completely inhibited N2O reduction to N2 by growing cells. These results indicate that A. magnetotacticum is a microaerophilic denitrifier that is versatile in its nitrogen metabolism, concomitantly reducing NO3 by assimilatory and dissimilatory means. This bacterium appears to be the first described denitrifier with an absolute requirement for O2. The process of NO3 reduction appears well adapted for avoiding accumulation of several nitrogenous intermediates that are toxic to cells.  相似文献   

15.
Biological N2 fixation is the dominant supply of new nitrogen (N) to the oceans, but is often inhibited in the presence of fixed N sources such as nitrate (NO3 ). Anthropogenic fixed N inputs to the ocean are increasing, but their effect on marine N2 fixation is uncertain. Thus, global estimates of new oceanic N depend on a fundamental understanding of factors that modulate N source preferences by N2-fixing cyanobacteria. We examined the unicellular diazotroph Crocosphaera watsonii (strain WH0003) to determine how the light-limited growth rate influences the inhibitory effects of fixed N on N2 fixation. When growth (µ) was limited by low light (µ = 0.23 d−1), short-term experiments indicated that 0.4 µM NH4 + reduced N2-fixation by ∼90% relative to controls without added NH4 +. In fast-growing, high-light-acclimated cultures (µ = 0.68 d−1), 2.0 µM NH4 + was needed to achieve the same effect. In long-term exposures to NO3 , inhibition of N2 fixation also varied with growth rate. In high-light-acclimated, fast-growing cultures, NO3 did not inhibit N2-fixation rates in comparison with cultures growing on N2 alone. Instead NO3 supported even faster growth, indicating that the cellular assimilation rate of N2 alone (i.e. dinitrogen reduction) could not support the light-specific maximum growth rate of Crocosphaera. When growth was severely light-limited, NO3 did not support faster growth rates but instead inhibited N2-fixation rates by 55% relative to controls. These data rest on the basic tenet that light energy is the driver of photoautotrophic growth while various nutrient substrates serve as supports. Our findings provide a novel conceptual framework to examine interactions between N source preferences and predict degrees of inhibition of N2 fixation by fixed N sources based on the growth rate as controlled by light.  相似文献   

16.
Although previous research has demonstrated that NO3 inhibits microbial Fe(III) reduction in laboratory cultures and natural sediments, the mechanisms of this inhibition have not been fully studied in an environmentally relevant medium that utilizes solid-phase, iron oxide minerals as a Fe(III) source. To study the dynamics of Fe and NO3 biogeochemistry when ferric (hydr)oxides are used as the Fe(III) source, Shewanella putrefaciens 200 was incubated under anoxic conditions in a low-ionic-strength, artificial groundwater medium with various amounts of NO3 and synthetic, high-surface-area goethite. Results showed that the presence of NO3 inhibited microbial goethite reduction more severely than it inhibited microbial reduction of the aqueous or microcrystalline sources of Fe(III) used in other studies. More interestingly, the presence of goethite also resulted in a twofold decrease in the rate of NO3 reduction, a 10-fold decrease in the rate of NO2 reduction, and a 20-fold increase in the amounts of N2O produced. Nitrogen stable isotope experiments that utilized δ15N values of N2O to distinguish between chemical and biological reduction of NO2 revealed that the N2O produced during NO2 or NO3 reduction in the presence of goethite was primarily of abiotic origin. These results indicate that concomitant microbial Fe(III) and NO3 reduction produces NO2 and Fe(II), which then abiotically react to reduce NO2 to N2O with the subsequent oxidation of Fe(II) to Fe(III).  相似文献   

17.
We examined nitrate-dependent Fe2+ oxidation mediated by anaerobic ammonium oxidation (anammox) bacteria. Enrichment cultures of “Candidatus Brocadia sinica” anaerobically oxidized Fe2+ and reduced NO3 to nitrogen gas at rates of 3.7 ± 0.2 and 1.3 ± 0.1 (mean ± standard deviation [SD]) nmol mg protein−1 min−1, respectively (37°C and pH 7.3). This nitrate reduction rate is an order of magnitude lower than the anammox activity of “Ca. Brocadia sinica” (10 to 75 nmol NH4+ mg protein−1 min−1). A 15N tracer experiment demonstrated that coupling of nitrate-dependent Fe2+ oxidation and the anammox reaction was responsible for producing nitrogen gas from NO3 by “Ca. Brocadia sinica.” The activities of nitrate-dependent Fe2+ oxidation were dependent on temperature and pH, and the highest activities were seen at temperatures of 30 to 45°C and pHs ranging from 5.9 to 9.8. The mean half-saturation constant for NO3 ± SD of “Ca. Brocadia sinica” was determined to be 51 ± 21 μM. Nitrate-dependent Fe2+ oxidation was further demonstrated by another anammox bacterium, “Candidatus Scalindua sp.,” whose rates of Fe2+ oxidation and NO3 reduction were 4.7 ± 0.59 and 1.45 ± 0.05 nmol mg protein−1 min−1, respectively (20°C and pH 7.3). Co-occurrence of nitrate-dependent Fe2+ oxidation and the anammox reaction decreased the molar ratios of consumed NO2 to consumed NH4+ (ΔNO2/ΔNH4+) and produced NO3 to consumed NH4+ (ΔNO3/ΔNH4+). These reactions are preferable to the application of anammox processes for wastewater treatment.  相似文献   

18.
The effects of several photosynthetic inhibitors and uncouplers of oxidative phosphorylation on NO3 and NO2 assimilation were studied using detached barley (Hordeum vulgare L. cv Numar) leaves in which only endogenous NO3 or NO2 were available for reduction. Uncouplers of oxidative phosphorylation greatly increased NO3 reduction in both light and darkness, while photosynthetic inhibitors did not.

The NO2 concentration in the control leaves was very low in both light and darkness; 98% or more of the NO2 formed from NO3 was further assimilated in control leaves. More NO2 accumulated in the leaves in light and darkness in the presence of photosynthetic inhibitors. Of this NO2, 94% or more was further assimilated. It appears that metabolites, either external or internal to the chloroplast, capable of reducing NADP (which, in turn, could reduce ferredoxin via NADP reductase) might support NO2 reduction in darkness and light when photosynthetic electron flow is inhibited by photosynthetic inhibitors.

Nitrite assimilation was much more sensitive to uncouplers in darkness than in light: in darkness, 74% or more of NO2 formed from NO3 was further assimilated, whereas in light, 95% or more of the NO2 was further assimilated.

  相似文献   

19.
Dark-grown, detopped corn seedlings (cv. Pioneer 3369A) were exposed to treatment solutions containing Ca(NO3)2, NaNO3, or KNO3; KNO3 plus 50 or 100 millimolar sorbitol; and KNO3 at root temperatures of 30, 22, or 16 C. In all experiments, the accelerated phase of NO3 transport had previously been induced by prior exposure to NO3 for 10 hours. The experimental system allowed direct measurements of net NO3 uptake and translocation, and calculation of NO3 reduction in the root. The presence of K+ resulted in small increases in NO3 uptake, but appreciably stimulated NO3 translocation out of the root. Enhanced translocation was associated with a marked decrease in the proportion of absorbed NO3 that was reduced in the root. When translocation was slowed by osmoticum or by low root temperatures, a greater proportion of absorbed NO3 was reduced in the presence of K+. Results support the proposition that NO3 reduction in the root is reciprocally related to the rate of NO3 transport through the root symplasm.  相似文献   

20.
The effect of Ca2+ on NO3 assimilation in young barley (Hordeum vulgare L. var CM 72) seedlings in the presence and absence of NaCl was studied. Calcium increased the activity of the NO3 transporter under saline conditions, but had little effect under nonsaline conditions. Calcium decreased the induction period for the NO3 transporter under both saline and nonsaline conditions but had little effect on its apparent Km for NO3 both in the presence and absence of NaCl. The enhancement of NO3 transport by Ca2+ under saline conditions was dependent on the presence of Ca2+ in the uptake solution along with the salt, since Ca2+ had no effect when supplied before or after salinity stress. Although Mn2+ and Mg2+ enhanced NO3 uptake under saline conditions, neither was as effective as Ca2+. In longer studies, increasing the Ca2+ concentration in saline nutrient solutions resulted in increases in NO3 assimilation and seedling growth.  相似文献   

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