Using DNA barcoding to assess Caribbean reef fish biodiversity: expanding taxonomic and geographic coverage

This paper represents a DNA barcode data release for 3,400 specimens representing 521 species of fishes from 6 areas across the Caribbean and western central Atlantic regions (FAO Region 31). Merged with our prior published data, the combined efforts result in 3,964 specimens representing 572 species of marine fishes and constitute one of the most comprehensive DNA barcoding "coverages" for a region reported to date. The barcode data are providing new insights into Caribbean shorefish diversity, allowing for more and more accurate DNA-based identifications of larvae, juveniles, and unknown specimens. Examples are given correcting previous work that was erroneous due to database incompleteness.     

Taxonomic list of the asteroids (Echinodermata: Asteroidea) from the shelf and superior slope from the Colombian Caribbean

Between 1998 and 2001 we surveyed the benthic macrofauna of the continental shelf and its upper slope in the Colombian Caribbean. The INVEMAR-MACROFAUNA I-II expeditions used a "semi-ballon" net were for 10 minute bottom drags from Punta Gallinas (Guajira) to Arboletes (Antioquia). These covered seven ecological sectors from the Colombian Caribbean: Guajira (GUA), Palomino (PAL), Tayrona (TAY), Magdalena (MAG), Archipiélagos Coralinos (ARCO), Morrosquillo (MOR), and Darié (DAR). We collected 4109 Asteroidea individuals belonging to six orders, 13 families, 26 genera, four subgenera, 35 species and eight subspecies. Luidia barbadensis, Luidia heterozona barimae, Luidia ludwigi scotti, Luidia sarsi elegans, Prionaster elegans, Cheiraster (Cheiraster) planus, Cheiraster (Cheiraster) sepitus, Cheiraster (Barbadosaster) echinulatus, Pseudarchaster gracilis gracilis, Rosaster alexandri, Pteraster acicula, Pteraster militarioides militarioides, Doraster constellatus, Mammaster sigsbeei and Coronaster briareus are first records for the Colombian Caribbean. Luidia sarsi elegans, Marginaster pectinatus, Tamaria halperni and Stephanasterias albula are first records for the south Caribbean and Pterasterpersonatus and Dipsacaster antillensis are first records for the Caribbean sea.     

Global biogeographical data bases on marine fishes: caveat emptor

A review of georeferenced collection‐site records for Caribbean shore‐fishes served by major online distributors of aggregated biodiversity data found large‐scale errors in over a third of the species and genera, in nearly two‐thirds of the families. To avoid compromising the value of their services to the global science community online providers must actively address the question of data quality.     

Some Digenetic Trematodes of Marine Fishes from the Barrier Reef and Reef Lagoon of Belize

A total of 200 marine fishes (36 species) from the Caribbean Sea off Belize were examined for digenetic trematodes and 163 (81.5%) harbored at least one species. Five species are described as new: Lasiotocus asymmetricus (Monorchiidae) from Haemulon flavolineatum; Stephanostomum belizense (Acanthocolpidae) from Caranx bartholomaei; Neolepidapedon belizense (Lepocreadiidae) from Sphyraena barracuda; Opecoeloides belizensis (Opecoelidae) from Priacanthus arenatus; Saturnius belizensis (Hemiuridae) from Mugil curema. 72 previously known species were identified, and all represent new geographical distribution records while many are recorded from new hosts. Their zoogeographical affinities are very strongly with the tropical western Atlantic, although some also occur in the eastern Atlantic, Mediterranean, and Indo-Pacific regions.     

Repeated invasions into the twilight zone: evolutionary origins of a novel assemblage of fishes from deep Caribbean reefs

Mesophotic and deeper reefs of the tropics are poorly known and underexplored ecosystems worldwide. Collectively referred to as the ‘twilight zone’, depths below ~30–50 m are home to many species of reef fishes that are absent from shallower depths, including many undescribed and endemic species. We currently lack even a basic understanding of the diversity and evolutionary origins of fishes on tropical mesophotic reefs. Recent submersible collections in the Caribbean have provided new specimens that are enabling phylogenetic reconstructions that incorporate deep‐reef representatives of tropical fish genera. Here, we investigate evolutionary depth transitions in the family Gobiidae (gobies), the most diverse group of tropical marine fishes. Using divergence‐time estimation coupled with stochastic character mapping to infer the timing of shallow‐to‐deep habitat transitions in gobies, we demonstrate at least four transitions from shallow to mesophotic depths. Habitat transitions occurred in two broad time periods (Miocene, Pliocene–Pleistocene), and may have been linked to the availability of underutilized niches, as well as the evolution of morphological/behavioural adaptations for life on deep reefs. Further, our analysis shows that at least three evolutionary lineages that invaded deep habitats subsequently underwent speciation, reflecting another unique mode of radiation within the Gobiidae. Lastly, we synthesize depth distributions for 95 species of Caribbean gobies, which reveal major bathymetric faunal breaks at the boundary between euphotic and mesophotic reefs. Ultimately, our study is the first rigorous investigation into the origin of Caribbean deep‐reef fishes and provides a framework for future studies that utilize rare, deep‐reef specimens.     

Reef fishes community structure in 4 atolls of the San Andrés - Providencia Archipelago (Southwestern Caribbean)

In 1994 and 1995, 131 visual censuses of reef fishes were made using the stationary sampling method in Courtown, Albuquerque, Serrana and Roncador, four atolls of the Archipelago of San Andrés and Old Providence in the Southwestern Caribbean. Fish species and their abundances were recorded in four geomorphologic zones: lagoon, windward barrier reef, windward terrace and forereef terrace. A total of 98 species were censused; the most abundant were Chromis cyanea (14%), Clepticus parra (14%) and Stegastes partitus (10%). The most abundant families were Pomacentridae (37%), Labridae (28%) and Scaridae (10%). Analysis of similarities showed that differences between zones were greater than differences between atolls, but lagoon and forereef terrace were not significantly different. Cluster and ordination analysis confirmed these results; in addition, the ordination analysis placed the groups according to depth and wave-exposure gradients, suggesting that these two physical variables were responsibles for the clustering. Differences in equitability and species richness appear also due to these variables. Inverse analysis showed in each group few characteristic species, then the differences between zones were due specially to dominance of some species. The dominant trophic categories were planktivorous and herbivorous that were significantly different between zones. In shallow zones (shallow lagoonal patch reefs) and high wave-exposed zones (winward barrier reef) dominated herbivorous fishes, while in deeper zones (terraces and deep lagoonal patch reefs) planktivorous were more abundant.     

Diversity of Saint Helena Island and zoogeography of zoantharians in the Atlantic Ocean: Jigsaw falling into place

Diversity surveys in isolated sites, such as oceanic islands, provide biogeographic data that can improve our analyses and knowledge of evolutionary processes in the oceans. Zoantharians (Cnidaria: Anthozoa) are common and widespread components of shallow-water reefs, but distributional analyses are scarce for this group. In this study, we collected Zoantharia specimens from around Saint Helena Island (STH) in the mid-Atlantic and identified species using external morphology and molecular data. Moreover, we compiled and analysed the most comprehensive distributional data for zoantharian species in the subtropical and tropical Atlantic Ocean to date. Our results show eight zoantharian species in STH, which includes seven new records for STH waters. Furthermore, all families and genera of the suborder Brachycnemina recorded are widespread in the Atlantic Ocean, including at least four amphi-Atlantic species. The Caribbean is the richness centre in the Atlantic Ocean for zoantharian species, a pattern similar to that observed for many other subtropical/tropical marine taxa. However, Zoantharia may have a lower endemism rate in some areas than other common reef animals, for example zooxanthellate scleractinian corals and reef fishes. Moreover, zoantharian species have a more extensive distribution than close-related taxa such as zooxanthellate scleractinian corals and hydrocorals in the Atlantic Ocean.     

Fish with Chips: Tracking Reef Fish Movements to Evaluate Size and Connectivity of Caribbean Marine Protected Areas

Coral reefs and associated fish populations have experienced rapid decline in the Caribbean region and marine protected areas (MPAs) have been widely implemented to address this decline. The performance of no-take MPAs (i.e., marine reserves) for protecting and rebuilding fish populations is influenced by the movement of animals within and across their boundaries. Very little is known about Caribbean reef fish movements creating a critical knowledge gap that can impede effective MPA design, performance and evaluation. Using miniature implanted acoustic transmitters and a fixed acoustic receiver array, we address three key questions: How far can reef fish move? Does connectivity exist between adjacent MPAs? Does existing MPA size match the spatial scale of reef fish movements? We show that many reef fishes are capable of traveling far greater distances and in shorter duration than was previously known. Across the Puerto Rican Shelf, more than half of our 163 tagged fish (18 species of 10 families) moved distances greater than 1 km with three fish moving more than 10 km in a single day and a quarter spending time outside of MPAs. We provide direct evidence of ecological connectivity across a network of MPAs, including estimated movements of more than 40 km connecting a nearshore MPA with a shelf-edge spawning aggregation. Most tagged fish showed high fidelity to MPAs, but also spent time outside MPAs, potentially contributing to spillover. Three-quarters of our fish were capable of traveling distances that would take them beyond the protection offered by at least 40–64% of the existing eastern Caribbean MPAs. We recommend that key species movement patterns be used to inform and evaluate MPA functionality and design, particularly size and shape. A re-scaling of our perception of Caribbean reef fish mobility and habitat use is imperative, with important implications for ecology and management effectiveness.     

Length–weight relationships of 10 fish species from Shengsi Ma'an Archipelago Special Marine Protected Area,East China Sea

The length–weight relationships (LWR) for 10 species belonging to seven families from the Shengsi Ma'an Archipelago Special Marine Protected Area (East China Sea) are presented. Four fishes had no previous LWR estimates in FishBase, and one new maximum fish length was recorded in the study.     

Taxonomic and Distributional Databases of Fishes in Taiwan

The fishes of Taiwan comprise total 2450 species in 250 families, about 1/10 of the world's fishes. Curatorial and distributional data of Taiwanese fish have been integrated into a database that can be accessed interactively on the Internet at http://fishdb.sinica.edu.tw. The database includes the following items: basic information and specimen photo of each species, distributional database, bibliographic database, curatorial database, inquiring system for Chinese fish names of the world fishes, and new version of erratum of Fishes of Taiwan. The above regional database of Taiwanese fishes provides hyperlinks to fish data for each species in the global fish data, FishBase, of ICLARM (http://www.fishbase.org). Through the collaboration with FishBase and other global networks for taxonomic purposes, like Species 2000, BioNet, or GBIF (Global Biodiversity Information Facilities), users in the world can also obtain updated data provided by Taiwan. We hope our experience with database establishment can be used as a model to help other countries to develop their own regional fish databases or even to build up databases of other groups of organisms. There should be one good approach for all people in the world for sharing complete and updated biodiversity information via the Internet.     

Comparison of digenean faunas of sillaginid fishes from inshore and offshore waters of Visakhapatnam Coast, Bay of Bengal

The sillaginid fishes of Visakhapatnam Coast, Bay of Bengal, are found to be hosts for 16 species of digeneans of which seven are adult digeneans belonging to families Opecoelidae, Zoogonidae and Hemiuridae and nine are larval digeneans representing families Bucephalidae, Heterophyidae, Cryptogonimidae, Acanthocolpidae, Hemiuridae and Didymozoidae. The digenean fauna of sillaginid fishes from shallow coastal waters (< 10 m depth) and deeper offshore waters (30–50 m depth) are compared and results are discussed in the light of existing information on the migratory movements of different species of sillaginids and their occurrence in coastal or offshore waters. The usefulness of metacercariae of these fishes as 'biological tags' is considered.     

Ecological and zoogeographic characterization of the ichthyofauna of Sivuch’ya Bay (Peter the Great Bay,Sea of Japan)

An inventory of the ichthyofauna of Sivuch’ya Bay (Far Eastern State Marine Biosphere Reserve) was made for the first time. Based on the results of our research (during all seasons of 1994–2004), the list of Sivuchya Bay fishes includes 108 species belonging to 15 orders, 45 families, and 84 genera. The greatest number of taxa was found for the orders Perciformes (17 families, 33 genera, and 40 species) and Scorpaeniformes (8, 18, and 28, respectively). The following families dominate in terms of the number of species: Stichaeidae, 15 species; Cottidae, 11; Pleuronectidae, 9; Gobiidae, 5; Hexagrammidae, 5; Clupeidae, 4; and Tetraodontidae, 4. These seven families include 53 species (49.1%). The data, confirmed by the results of regression analysis, show that the bay ichthyofauna is well studied. Zoogeographical analysis indicates that the bulk of ichthyofauna is constituted by fishes of Asian origin (low boreal, low boreal-subtropical and widely distributed boreal), 80 species (74.1%). Bottom and near-bottom fishes are dominating elements of the Sivuch’ya Bay ichthyofauna, with 83 species (76.9%); pelagic fishes 25 species make up (23.1%).     

Marine biodiversity of Costa Rica, the microcrustacea: Copepoda (Crustacea: Maxillopoda)

This report is part of a series that summarizes the species and localities of Costa Rican marine taxa. A review of the literature on copepods, both pelagic and benthic for the Pacific and Caribbean coast of Costa Rica, includes eighty species. Sixty seven pelagic species have been found, distributed between sixteen calanoid, one cyclopoid, three harparticoid and four poecilostomatoid families. Moreover, thirteen benthonic species distributed into six families, all harparticoids, are reported. Among the pelagic families, Pontellidae has six species, while Paracalanidae and Eucalanidae had five each. Other families, like Calanidae, Pseudodiaptomidae and Acartiidae had four species and most families only one. Forty five species are reported only for the Pacific coast, thirteen for the Caribbean coast, only nine species occurred in both coasts; being a direct consequence of the more intensive research effort in the Pacific. Pelagic copepod biodiversity reflects different oceanographic conditions in both coasts. Typical estuarine species were found in the lower region of the Gulf of Nicoya, while a mixture of estuarine and oceanic species were found in Golfo Dulce. Diversity in the Caribbean, specially at the Cahuita coral reef is lower in comparison with the copepod diversity found in other regions in the Caribbean sea. This may be due to the high sediment resuspension rate characteristic of the Cahuita coral reef, which could affect the reproduction of many holozooplankters, specially copepods. Although sixty seven pelagic copepod species appears to be in low numbers, in terms of specific biodiversity it is as high when compared to numbers found in other tropical areas. Thirteen species are reported in the literature, all harparticoids. Five species, three sub-species and one genera were new to science. Balacopsylla is reported for the first time from a neotropical regions, while the genus Karllangia, represented by two coexisting species in the Caribbean coast, belong to a few circumtropical-subtropical genera. The most diverse family was Tetragonicipitidae. This is the first effort to summarize the available information about the biodiversity of marine copepods for Costa Rica's coasts.     

An evaluation of the use of branching fire-corals (Millepora spp.) as refuge by reef fish in the Abrolhos Bank, eastern Brazil

Branching scleractinians provide fish with critical refuge against predation. While in the Caribbean and Indo-Pacific regions they are conspicuous elements of the reef community, in the tropical Southwestern Atlantic (Brazil) branching corals are lacking and massive forms dominate. The only branching forms that occur in Brazil are stinging fire-corals of genus Millepora (Hydrozoa). Preliminary observations showed that several fish species seek refuge within fire-corals in Brazil, suggesting that they may replace the functional role played by scleractinians in other regions. Here, the association of fishes to individual fire-coral colonies (Millepora alcicornis and M. brasiliensis) and the relationship between fire-coral cover and fish abundance was studied in eastern Brazil. A total of 38 fish species from 18 families (37?% of the regional species pool) were recorded within fire-corals. Most records were of relatively small-bodied fishes and juveniles of large-bodied fishes. Comparative observations between day and night indicated that fire-corals are used as sleeping sites by a few species. Volume of colonies was positively correlated with fish abundance and species richness. Over a large spatial scale (tens of kilometers) fire-coral cover had a positive and significant influence on the abundance of three fish species only (Abudefduf saxatilis, Acanthurus coeruleus and Microspatodon chrysurus). Although physical attributes of colonies and fire-coral cover may help to account for some of the spatial variability in fish abundance, fire-corals may be considered as an alternative instead of a critical microhabitat for fish. The advantages and drawbacks of living in a branching and stinging environment are discussed.     

Microhabitat characteristics of <Emphasis Type="Italic">Stegastes planifrons</Emphasis> and <Emphasis Type="Italic">S. adustus</Emphasis> territories

Stegastes adustus and Stegastes planifrons are two species of damselfishes commonly found in the Caribbean. These territorial fishes have been widely studied due to their major ecological role on coral reef in controlling the growth of macroalgae that compete with corals for space and, inversely, on their deleterious role in destroying coral tissues to impulse the development of algae. However, few studies were conducted on the biotic and abiotic components of their territories. In the present study, territory size and surfaces of benthic components (macroalgae, algal turf, massive corals, branching corals, Milleporidae, sponges, sand and rubbles) were estimated for the two species at two contrasted sites. At Ilet Pigeon site (IP), the two damselfishes were found at different depth and exhibited different territory sizes. S. adustus defended a larger territory characterized by massive corals, sand and Milleporidae, while S. planifrons territories were smaller, deeper and characterized by branching corals, sponges and rubble. At Passe-à-Colas site (PC), the two fish species coexisted in the same depth range and defended territories of similar size. Their territories presented higher proportions of macroalgae, but smaller surfaces of Milleporidae than at IP. At PC, the main difference between the two species was a higher surface of massive corals inside S. planifrons territories than S. adustus territories. Differences in microhabitat characteristics between the two Stegastes seemed mostly site related. This resulted from the high plasticity of two species, allowing them to persist on Caribbean coral reefs after the decline of most branching acroporids, their former favorite habitats.     

Diversity in the Monogenea and Digenea: does lifestyle matter?

If the cestodes are excluded, then the parasitic platyhelminths of fishes divide neatly into the external and monoxenous Monogenea and the internal and heteroxenous Digenea. Both groups have apparently had long associations of coevolution, host switching and adaptation with fishes and have become highly successful in their respective habitats. Current estimates of species richness for the two groups suggest that they may be remarkably similar. Here we consider the nature of the diversity of the Monogenea and Digenea of fishes in terms of richness of species and higher taxa to determine what processes may be responsible for observed differences. The Monogenea includes at least two super-genera (Dactylogyrus and Gyrodactylus) each of which has hundreds of species; no comparable genera are found in the Digenea. Possible reasons for this difference include the higher host specificity of monogeneans and their shorter generation time. If allowance is made for the vagaries of taxonomic 'lumping' and 'splitting', then there are probably comparable numbers of families of monogeneans and digeneans in fishes. However, the nature of the families differ profoundly. Richness in higher taxa (families) in the Digenea is explicable in terms of processes that appear to have been unimportant in the Monogenea. Readily identifiable sources of diversity in the Digenea are: recolonisation of fishes by taxa that arose in association with tetrapods; adoption of new sites within hosts; adoption of new diets and feeding mechanisms; adaptations relating to the exploitation of ecologically similar groups of fishes and second intermediate hosts; and adaptations relating to the exploitation of phylogenetic lineages of molluscs. In contrast, most higher- level monogenean diversity (other than that associated with the subclasses) relates principally to morphological specialisation for attachment by the haptor.     

The importance of the marine ornamental reef fish trade in the wider Caribbean

The marine ornamental fish trade began in the 1930s in Sri Lanka, spread to Hawaii and the Philippines in the 1950s, and expanded to a multi-million dollar industry in the 1970s with fisheries established throughout the tropical Pacific, Indian and Atlantic Oceans. Currently, 45 countries supply global markets an estimated 14-30 million fish annually, with an import value of US$28-44 million. The largest suppliers are Indonesia and the Philippines, followed by Brazil, Maldives, Vietnam, Sri Lanka and Hawaii. In the tropical Western Atlantic, 16 countries have export fisheries, including the U.S. (Florida and Puerto Rico). The U.S. is the world's largest buyer, followed by the European Union and Japan. The global trade consists of over 1400 species of reef fishes, of which only about 25 are captive bred on a commercial scale. Damselfish, anemonefish, and angelfish constitute over 50% of the global volume; butterflyfish, wrasses, blennies, gobies, triggerfish, filcfish, hawkfishes, groupers and basselets account for 31% of the trade, and the remaining 16% is represented by 33 families. The most important fishes from the Caribbean are angelfish (six species), seahorses (two species), royal gramma, jawfish, queen triggerfish, redlip blenny, puddingwife, bluehead wrasse, and blue chromis. The Caribbean currently supplies a small percentage of the global trade in marine ornamental species, but ornamental fisheries in this region represent important emerging industries. It is critical that effective ornamental fishery management plans and regulations are developed and enforced, and fishery-dependent and fishery-independent data are collected and utilized in decision making processes to ensure sustainable ornamental fisheries throughout the region.     

TAXONOMIC STATUS OF THE GENUS SOTALIA: SPECIES LEVEL RANKING FOR "TUCUXI" (SOTALIA FLUVIATILIS) AND "COSTERO" (SOTALIA GUIANENSIS) DOLPHINS

Dolphins of the genus Sotalia are found along the Caribbean and Atlantic coasts of Central and South America and in the Amazon River and most of its tributaries. At present, the taxonomy of these dolphins remains unresolved. Although five species were described in the late 1800s, only one species is recognized currently ( Sotalia fluviatilis ) with two ecotypes or subspecies, the coastal subspecies ( Sotalia fluviatilis guianensis ) and the riverine subspecies ( Sotalia fluviatilis fluviatilis ). Recent morphometric analyses, as well as mitochondrial DNA analysis, suggested recognition of each subspecies as separate species. Here we review the history of the classification of this genus and present new genetic evidence from ten nuclear and three mitochondrial genes supporting the elevation of each subspecies to the species level under the Genealogical/Lineage Concordance Species Concept and the criterion of irreversible divergence. We also review additional evidence for this taxonomic revision from previously published and unpublished genetic, morphological, and ecological studies. We propose the common name "costero" for the coastal species, Sotalia guianensis ( Van Bénéden 1864 ), and accept the previously proposed "tucuxi" dolphin, Sotalia fluviatilis (Gervais, 1853), for the riverine species.     

Two new species of swallowerfishes of the genera Chiasmodon and Kali (Chiasmodontidae)

Described are two new species of swallowerfishes—Chiasmodon lavenbergi sp. n. from the western Pacific, differing from other species of the genus by the retaining of epidermal spinules on the skin in adult fishes and by a fixed marginal teeth in the jaws, and Kali caribbaea sp. n. from the southern part of the Caribbean Sea (western Atlantic), differing from other species of the genus by features of dentition and a set of certain other characters.     

Influences of body mass,temperature, oxygen tension,and salinity on respiratory oxygen consumption of cyprinodontoid fishes of three families

This review evaluates the current state of knowledge of influences of body mass, ambient temperature, P_O2, and salinity on routine metabolic rates of members of three families, Fundulidae, Cyprinodontidae, and Poeciliidae, belonging to the order Cyprinodontiformes. The study was motivated by Winberg’s (Fisheries Research Board of Canada, Translation Series No. 194. Distributed by the Fisheries Research Board of Canada Biological Station, Nanaimo, BC, 1960) conclusion that the Cyprinodontiformes (Winberg included only live-bearing poeciliids) generally have lower metabolic rates that do other fishes. Based on available information Winberg’s conclusion was borne out that live-bearing freshwater poeciliids show lower than average routine metabolic rates compared to other freshwater fish groups. This is also true of poeciliids from saline waters, and of both freshwater and saline-water members of the related families Fundulidae and Cyprinodontidae. However, considerable variation in metabolic patterns was noted within and among these three families. There were geographic variations between subspecies of some species. Some island groups/species showed lower routine metabolic rates than did allied mainland groups/species. Thermal responses (Q₁₀ values) in routine metabolic rates of these fishes showed variations with geographic location, P_O2, salinity and size. Values of P_O2crit were altered among species by temperature, body size/age, and possibly salinity. Influences of ambient salinity on routine metabolic rates of these cyprinodontoid fishes also showed variations with temperature and size/age of individuals. The patterns of metabolic responses in these cyprinodontoid fishes to environmental conditions were generally similar to those of other species. Unfortunately, the available information on these fishes lacks the uniformity that would allow for critical and quantitative comparisons between and among the cyprinodontoids and with other species.