共查询到20条相似文献，搜索用时 15 毫秒
1.
Colin J. Garroway Jeff Bowman Denis Carr Paul J. Wilson 《Evolutionary Applications》2008,1(4):620-630
We investigated the relationships among landscape quality, gene flow, and population genetic structure of fishers (Martes pennanti) in ON, Canada. We used graph theory as an analytical framework considering each landscape as a network node. The 34 nodes were connected by 93 edges. Network structure was characterized by a higher level of clustering than expected by chance, a short mean path length connecting all pairs of nodes, and a resiliency to the loss of highly connected nodes. This suggests that alleles can be efficiently spread through the system and that extirpations and conservative harvest are not likely to affect their spread. Two measures of node centrality were negatively related to both the proportion of immigrants in a node and node snow depth. This suggests that central nodes are producers of emigrants, contain high‐quality habitat (i.e., deep snow can make locomotion energetically costly) and that fishers were migrating from high to low quality habitat. A method of community detection on networks delineated five genetic clusters of nodes suggesting cryptic population structure. Our analyses showed that network models can provide system‐level insight into the process of gene flow with implications for understanding how landscape alterations might affect population fitness and evolutionary potential. 相似文献
2.
Translocation of animals to re-establish extirpated populations or to maintain declining ones has often been carried out without genetic information on source or target populations, or adequate consideration of the potential effects of mixing genetic stocks. We consider the conservation status of the fisher (Martes pennanti) and evaluate the potential genetic consequences of past and future translocations on this medium-sized carnivore by examining population variation in mitochondrial control-region sequences. We sampled populations throughout the fisher's range in North America including five populations unaffected by translocations and two western populations that had received long-distance translocations. Twelve haplotypes showed little sequence divergence. Haplotype frequencies differed significantly among subspecies and between populations within subspecies. Analysis of molecular variance (amova) and neighbour-joining analyses of haplotype relationships revealed population subdivision similar to current subspecies designations, but which may reflect an isolation-by-distance pattern. Populations in Oregon and in Montana and Idaho received several translocations and each showed greater similarity to the populations where translocations originated than to adjacent populations. Additional sequences obtained from museum specimens collected prior to any translocations suggest historical gene flow among populations in British Columbia, Washington, Oregon, and California. Anthropogenic impacts in that region have greatly reduced and isolated extant populations in Oregon and California. Future translocations may be necessary to recover populations in Washington and portions of Oregon and California; our results indicate that British Columbia would be the most appropriate source population. 相似文献
3.
MARK J. JORDAN J. MARK HIGLEY SEAN M. MATTHEWS OLIN E. RHODES MICHAEL K. SCHWARTZ REGINALD H. BARRETT PER J. PALSB
LL 《Molecular ecology resources》2007,7(5):797-801
We developed 22 new microsatellite loci for the fisher (Martes pennanti), a North American mesocarnivore. The loci were developed with samples from the southern Sierra Nevada Mountains in California, and were screened with samples from this population and four other populations. We observed a range of six to 21 polymorphic loci per population, with the Sierra Nevada population exhibiting markedly lower levels of variation compared to the other four. 相似文献
4.
- The management of population size and genetic diversity in fragmented landscapes is the central issue in conservation biology. Functional connectivity between remnant habitat patches affects these parameters. However, the functional connectivity for genetic diversity would be characterised by a greater spatial scale than population size even within the same habitat network. The reason for this difference is that while dispersal frequency generally decreases with increasing distance, only a few immigrants may effectively contribute to gene flow, whereas a certain number of dispersers may be required to influence population abundance.
- Here, we investigated the effects of habitat network structures on population abundance and genetic diversity of the ninespine stickleback, Pungitius pungitius, in remnant wetland ponds in northern Japan. We tested (i) whether both population abundance and genetic diversity are positively related not only to habitat size but also to connectivity and (ii) whether the dispersal effect extends to greater spatial scales in genetic diversity than in population size.
- We employed a graph theoretical index to measure the degree of pond connectivity. This index can evaluate the connectivity threshold distance above which individuals cannot disperse and clarify the difference in the spatial scale of effective dispersal between population abundance and genetic diversity.
- Pond connectivity significantly affected the spatial variation of both population abundance and genetic diversity. In contrast, pond size was related only to population abundance. As we predicted, the connectivity threshold distance for genetic diversity was more than two times greater than that for population abundance (12.5 km versus 5 km, respectively).
- Our findings indicate that the landscape managers should consider various spatial scales as a conservation unit for the management of a habitat network in accordance with the conservation targets that they establish. We also found that small artificial agricultural ditches and streams may play important roles in sustaining the population networks of wetland organisms.
5.
Philip Bertrand Jeff Bowman Rodney J. Dyer Micheline Manseau Paul J. Wilson 《Molecular ecology》2017,26(15):3898-3912
Sex‐specific genetic structure is a commonly observed pattern among vertebrate species. Facing differential selective pressures, individuals may adopt sex‐specific life history traits that ultimately shape genetic variation among populations. Although differential dispersal dynamics are commonly detected in the literature, few studies have used genetic structure to investigate sex‐specific functional connectivity. The recent use of graph theoretic approaches in landscape genetics has demonstrated network capacities to describe complex system behaviours where network topology represents genetic interaction among subunits. Here, we partition the overall genetic structure into sex‐specific graphs, revealing different male and female dispersal dynamics of a fisher (Pekania [Martes] pennanti) metapopulation in southern Ontario. Our analyses based on network topologies supported the hypothesis of male‐biased dispersal. Furthermore, we demonstrated that the effect of the landscape, identified at the population level, could be partitioned among sex‐specific strata. We found that female connectivity was negatively correlated with snow depth, whereas connectivity among males was not. Our findings underscore the potential of conducting sex‐specific analysis by identifying landscape elements or configuration that differentially promotes or impedes functional connectivity between sexes, revealing processes that may otherwise remain cryptic. We propose that the sex‐specific graph approach would be applicable to other vagile species where differential sex‐specific processes are expected to occur. 相似文献
6.
ABSTRACT To better understand distribution and density of fishers (Martes pennanti) in industrial forests of north-central British Columbia, Canada, we examined factors affecting the probability of a potential home range being occupied by 10 radiotagged resident fishers in the Sub-Boreal Spruce biogeoclimatic zone between 1996 and 2000. Percentage of a home range in wetlands and recently logged (within past 12 yr) best predicted likelihood of occupancy by each fisher. Probability of a home range area being occupied by a resident fisher decreased with increasing amounts of wetlands and recent logging present in the area. We estimated that a 5% increase in wetlands or recent logging decreased the relative probability of occupancy of a potential home range by 50%. The accelerated rate of timber harvest in forests affected by mountain pine beetle (Dendroctonus ponderosae) infestations may have substantial implications for the ability of the landscape of central British Columbia to support sustainable populations of fishers. 相似文献
7.
Craig M. Thompson William J. Zielinski Kathryn L. Purcell 《The Journal of wildlife management》2011,75(5):1164-1176
Ecosystem management requires an understanding of how landscapes vary in space and time, how this variation can be affected by management decisions or stochastic events, and the potential consequences for species. Landscape trajectory analysis, coupled with a basic knowledge of species habitat selection, offers a straightforward approach to ecological risk analysis and can be used to project the effects of management decisions on species of concern. The fisher (Martes pennanti) occurs primarily in late-successional forests which, in the Sierra Nevada mountains, are susceptible to high-intensity wildfire. Understanding the effects of fuels treatments and fire on the distribution of fisher habitat is a critical conservation concern. We assumed that the more a treated landscape resembled occupied female fisher home ranges, the more likely it was to be occupied by a female and therefore the lower the risk to the population. Thus, we characterized important vegetation attributes within the home ranges of 16 female fishers and used the distribution of these attributes as a baseline against which the effects of forest management options could be compared. We used principal components analysis to identify the major axes defining occupied female fisher home ranges and these, in addition to select univariate metrics, became our reference for evaluating the effects of landscape change. We demonstrated the approach at two management units on the Sierra National Forest by simulating the effects of both no action and forest thinning, with and without an unplanned fire, on vegetation characteristics over a 45-yr period. Under the no action scenario, landscapes remained similar to reference conditions for approximately 30-yr until forest succession resulted in a loss of landscape heterogeneity. Comparatively, fuel treatment resulted in the reduction of certain forest elements below those found in female fisher home ranges yet little overall change in habitat suitability. Adding a wildfire to both scenarios resulted in divergence from reference conditions, though in the no action scenario the divergence was 4× greater and the landscape did not recover within the 45-yr timeframe. These examples demonstrate that combining the results of forest growth and disturbance modeling with habitat selection data may be used to quantify the potential effects of vegetation management activities on wildlife habitat. © 2011 The Wildlife Society. 相似文献
8.
McRae BH 《Evolution; international journal of organic evolution》2006,60(8):1551-1561
Despite growing interest in the effects of landscape heterogeneity on genetic structuring, few tools are available to incorporate data on landscape composition into population genetic studies. Analyses of isolation by distance have typically either assumed spatial homogeneity for convenience or applied theoretically unjustified distance metrics to compensate for heterogeneity. Here I propose the isolation-by-resistance (IBR) model as an alternative for predicting equilibrium genetic structuring in complex landscapes. The model predicts a positive relationship between genetic differentiation and the resistance distance, a distance metric that exploits precise relationships between random walk times and effective resistances in electronic networks. As a predictor of genetic differentiation, the resistance distance is both more theoretically justified and more robust to spatial heterogeneity than Euclidean or least cost path-based distance measures. Moreover, the metric can be applied with a wide range of data inputs, including coarse-scale range maps, simple maps of habitat and nonhabitat within a species' range, or complex spatial datasets with habitats and barriers of differing qualities. The IBR model thus provides a flexible and efficient tool to account for habitat heterogeneity in studies of isolation by distance, improve understanding of how landscape characteristics affect genetic structuring, and predict genetic and evolutionary consequences of landscape change. 相似文献
9.
Aritz Ruiz‐Gonzalez Samuel A. Cushman María José Madeira Ettore Randi Benjamín J. Gómez‐Moliner 《Molecular ecology》2015,24(20):5110-5129
Landscape genetics provides a valuable framework to understand how landscape features influence gene flow and to disentangle the factors that lead to discrete and/or clinal population structure. Here, we attempt to differentiate between these processes in a forest‐dwelling small carnivore [European pine marten (Martes martes)]. Specifically, we used complementary analytical approaches to quantify the spatially explicit genetic structure and diversity and analyse patterns of gene flow for 140 individuals genotyped at 15 microsatellite loci. We first used spatially explicit and nonspatial Bayesian clustering algorithms to partition the sample into discrete clusters and evaluate hypotheses of ‘isolation by barriers’ (IBB). We further characterized the relationships between genetic distance and geographical (‘isolation by distance’, IBD) and ecological distances (‘isolation by resistance’, IBR) obtained from optimized landscape models. Using a reciprocal causal modelling approach, we competed the IBD, IBR and IBB hypotheses with each other to unravel factors driving population genetic structure. Additionally, we further assessed spatially explicit indices of genetic diversity using sGD across potentially overlapping genetic neighbourhoods that matched the inferred population structure. Our results revealed a complex spatial genetic cline that appears to be driven jointly by IBD and partial barriers to gene flow (IBB) associated with poor habitat and interspecific competition. Habitat loss and fragmentation, in synergy with past overharvesting and possible interspecific competition with sympatric stone marten (Martes foina), are likely the main factors responsible for the spatial genetic structure we observed. These results emphasize the need for a more thorough evaluation of discrete and clinal hypotheses governing gene flow in landscape genetic studies, and the potential influence of different limiting factors affecting genetic structure at different spatial scales. 相似文献
10.
11.
川金丝猴湖北种群是川金丝猴分布的最东缘,现主要分布于神农架国家公园和巴东自然保护区,其作为单独的管理单元,相对较低的遗传多样性、孤立的遗传状态和较小的种群数量,使得该种群面对环境变化脆弱性高。以神农架为研究区域,首先基于物种分布模型获得川金丝猴移动的阻力图层,利用电路理论分析适宜生境连接度;其次,设置道路和旅游两个人为干扰情景,运用最小费用距离模型与电路理论模型,分析道路和旅游活动对川金丝猴移动路径以及对不同亚群内和亚群间连通性的影响;最后,利用CDPOP软件模拟道路对川金丝猴遗传多样性的影响。结果表明:(1)神农架川金丝猴适宜生境分布较集中,生境斑块间存在多个潜在扩散区域;(2)道路改变了川金丝猴往来于南北生境间的最优路径,旅游干扰对川金丝猴移动路径无明显影响,其干扰主要在于川金丝猴对其具有回避性,回避距离为100 m;(3)道路显著降低金猴岭亚群内的连通性,并显著增加了所有亚群间的移动阻力,旅游活动对亚群内和亚群间的连通性无显著影响;(4)川金丝猴种群在150年内的遗传多样性呈下降趋势,道路的影响将加剧遗传多样性下降的程度。基于以上结果本文提出了针对性的保护建议,对于该物种的保护和其他濒危物种的类似研究具有较强的参考价值和借鉴意义。 相似文献
12.
Metapopulation‐structured species can be negatively affected when landscape fragmentation impairs connectivity. We investigated the effects of urbanization on genetic diversity and gene flow for two sympatric amphibian species, spotted salamanders (Ambystoma maculatum) and wood frogs (Lithobates sylvaticus), across a large (>35,000 km2) landscape in Maine, USA, containing numerous natural and anthropogenic gradients. Isolation‐by‐distance (IBD) patterns differed between the species. Spotted salamanders showed a linear and relatively high variance relationship between genetic and geographic distances (r = .057, p < .001), whereas wood frogs exhibited a strongly nonlinear and lower variance relationship (r = 0.429, p < .001). Scale dependence analysis of IBD found gene flow has its most predictable influence (strongest IBD correlations) at distances up to 9 km for spotted salamanders and up to 6 km for wood frogs. Estimated effective migration surfaces revealed contrasting patterns of high and low genetic diversity and gene flow between the two species. Population isolation, quantified as the mean IBD residuals for each population, was associated with local urbanization and less genetic diversity in both species. The influence of geographic proximity and urbanization on population connectivity was further supported by distance‐based redundancy analysis and multiple matrix regression with randomization. Resistance surface modeling found interpopulation connectivity to be influenced by developed land cover, light roads, interstates, and topography for both species, plus secondary roads and rivers for wood frogs. Our results highlight the influence of anthropogenic landscape features within the context of natural features and broad spatial genetic patterns, in turn supporting the premise that while urbanization significantly restricts interpopulation connectivity for wood frogs and spotted salamanders, specific landscape elements have unique effects on these two sympatric species. 相似文献
13.
Craig M. Thompson J. Andrew Royle James D. Garner 《The Journal of wildlife management》2012,76(4):863-871
Wildlife management often hinges upon an accurate assessment of population density. Although undeniably useful, many of the traditional approaches to density estimation such as visual counts, livetrapping, or mark–recapture suffer from a suite of methodological and analytical weaknesses. Rare, secretive, or highly mobile species exacerbate these problems through the reality of small sample sizes and movement on and off study sites. In response to these difficulties, there is growing interest in the use of non-invasive survey techniques, which provide the opportunity to collect larger samples with minimal increases in effort, as well as the application of analytical frameworks that are not reliant on large sample size arguments. One promising survey technique, the use of scat detecting dogs, offers a greatly enhanced probability of detection while at the same time generating new difficulties with respect to non-standard survey routes, variable search intensity, and the lack of a fixed survey point for characterizing non-detection. In order to account for these issues, we modified an existing spatially explicit, capture–recapture model for camera trap data to account for variable search intensity and the lack of fixed, georeferenced trap locations. We applied this modified model to a fisher (Martes pennanti) dataset from the Sierra National Forest, California, and compared the results (12.3 fishers/100 km2) to more traditional density estimates. We then evaluated model performance using simulations at 3 levels of population density. Simulation results indicated that estimates based on the posterior mode were relatively unbiased. We believe that this approach provides a flexible analytical framework for reconciling the inconsistencies between detector dog survey data and density estimation procedures. © 2011 The Wildlife Society. 相似文献
14.
构建良好的生态网络是国土空间生态修复的重要内容,对保障区域生态安全,提高景观连通性、保护生物多样性具有重要意义。基于景观生态学原理,遵循“生态源地识别-综合阻力面构建-生态网络生成”基本模式构建区域生态网络是相关研究的主流做法。但该模式内部各环节所依赖的理论基础差异较大,相应的细化思路方法多元,考虑到尺度特征和景观的空间异质性,综合评估不同方法组合下研究结果的差异对深化原理认知和有效指导实践都具有重要意义。考虑到采用景观生态学原理构建生态网络中各环节技术方法的差异性,选取生态源地识别的4种方法、综合阻力面构建的2种方法以及生态网络生成的2种方法,分别基于最小累积阻力模型和电路理论对比两个视角,通过方法组合形成相应的生态网络并进行对比分析。研究结果表明：(1)由于原理差异,各环节下不同方法的分析结果具有显著差异,主要表现在生态源地的数量、面积和空间分布;阻力面高阻力值分布状况;以及生态廊道、生态节点的数量与格局特征等方面;(2)在基于最小累积阻力模型原理的对比方案中,构建包含Harary指数、整体连通性指数、可能连通性指数、成本比、网络密度、效能鲁棒性和廊道密度7个指标的评价体系,对该方... 相似文献
15.
Fishers are mid-sized forest carnivores indigenous to North America that experienced sharp population declines from the early 1800s through to the mid-1900s. To evaluate levels of genetic variation within and subdivision among northern fisher populations 459 individuals were genotyped using 13 microsatellite loci. Genetic diversity was found to be slightly lower in re-introduced populations than in adjacent indigenous populations. Furthermore, fisher populations revealed much more genetic structuring than two closely related mustelids. Further investigation is needed to determine if fishers are more philopatric than martens and wolverines or if barriers to dispersal explain the levels of structure identified in this study. 相似文献
16.
Understanding the relationship between structural and functional connectivity is
essential for successful restoration and conservation management, particularly in
intensely managed agricultural landscapes. We evaluated the relationship between
structural and functional connectivity of the wetland plant Lychnis flos-cuculi
in a fragmented agricultural landscape using landscape genetic and network approaches.
First, we studied the effect of structural connectivity, such as geographic distance and
various landscape elements (forest, agricultural land, settlements and ditch verges), on
gene flow among populations as a measurement of functional connectivity. Second, we
examined the effect of structural graph-theoretic connectivity measures on gene flow among
populations and on genetic diversity within populations of L. flos-cuculi. Among
landscape elements, forests hindered gene flow in L. flos-cuculi, whereas gene
flow was independent of geographic distance. Among the structural graph-theoretic
connectivity variables, only intrapopulation connectivity, which was based on population
size, had a significant positive effect on gene flow, that is, more gene flow took place
among larger populations. Unexpectedly, interpopulation connectivity of populations, which
takes into account the spatial location and distance among populations, did not influence
gene flow in L. flos-cuculi. However, higher observed heterozygosity and lower
inbreeding was observed in populations characterised by higher structural interpopulation
connectivity. This finding shows that a spatially coherent network of populations is
significant for maintaining the genetic diversity of populations. Nevertheless, lack of
significant relationships between gene flow and most of the structural connectivity
measures suggests that structural connectivity does not necessarily correspond to
functional connectivity. 相似文献
17.
S. Dupas B. le Ru A. Branca N. Faure G. Gigot P. Campagne M. Sezonlin R. Ndemah G. Ong'amo P.‐A. Calatayud J.‐F. Silvain 《Molecular ecology》2014,23(9):2313-2325
Current population genetic models fail to cope with genetic differentiation for species with large, contiguous and heterogeneous distribution. We show that in such a case, genetic differentiation can be predicted at equilibrium by circuit theory, where conductance corresponds to abundance in species distribution models (SDMs). Circuit‐SDM approach was used for the phylogeographic study of the lepidopteran cereal stemborer Busseola fuscaFüller (Noctuidae) across sub‐Saharan Africa. Species abundance was surveyed across its distribution range. SDMs were optimized and selected by cross‐validation. Relationship between observed matrices of genetic differentiation between individuals, and between matrices of resistance distance was assessed through Mantel tests and redundancy discriminant analyses (RDAs). A total of 628 individuals from 130 localities in 17 countries were genotyped at seven microsatellite loci. Six population clusters were found based on a Bayesian analysis. The eastern margin of Dahomey gap between East and West Africa was the main factor of genetic differentiation. The SDM projections at present, last interglacial and last glacial maximum periods were used for the estimation of circuit resistance between locations of genotyped individuals. For all periods of time, when using either all individuals or only East African individuals, partial Mantel r and RDA conditioning on geographic distance were found significant. Under future projections (year 2080), partial r and RDA significance were different. From this study, it is concluded that analytical solutions provided by circuit theory are useful for the evolutionary management of populations and for phylogeographic analysis when coalescence times are not accessible by approximate Bayesian simulations. 相似文献
18.
Graph theory is a body of mathematics dealing with problems of connectivity, flow, and routing in networks ranging from social groups to computer networks. Recently, network applications have erupted in many fields, and graph models are now being applied in landscape ecology and conservation biology, particularly for applications couched in metapopulation theory. In these applications, graph nodes represent habitat patches or local populations and links indicate functional connections among populations (i.e. via dispersal). Graphs are models of more complicated real systems, and so it is appropriate to review these applications from the perspective of modelling in general. Here we review recent applications of network theory to habitat patches in landscape mosaics. We consider (1) the conceptual model underlying these applications; (2) formalization and implementation of the graph model; (3) model parameterization; (4) model testing, insights, and predictions available through graph analyses; and (5) potential implications for conservation biology and related applications. In general, and for a variety of ecological systems, we find the graph model a remarkably robust framework for applications concerned with habitat connectivity. We close with suggestions for further work on the parameterization and validation of graph models, and point to some promising analytic insights. 相似文献
19.
The recent application of graph‐based network theory analysis to biogeography, community ecology and population genetics has created a need for user‐friendly software, which would allow a wider accessibility to and adaptation of these methods. EDENetworks aims to fill this void by providing an easy‐to‐use interface for the whole analysis pipeline of ecological and evolutionary networks starting from matrices of species distributions, genotypes, bacterial OTUs or populations characterized genetically. The user can choose between several different ecological distance metrics, such as Bray‐Curtis or Sorensen distance, or population genetic metrics such as FST or Goldstein distances, to turn the raw data into a distance/dissimilarity matrix. This matrix is then transformed into a network by manual or automatic thresholding based on percolation theory or by building the minimum spanning tree. The networks can be visualized along with auxiliary data and analysed with various metrics such as degree, clustering coefficient, assortativity and betweenness centrality. The statistical significance of the results can be estimated either by resampling the original biological data or by null models based on permutations of the data. 相似文献
20.
Abstract: Fishers (Martes pennanti) have recolonized eastern Ontario, Canada, but little is known about the survival of this harvested population. We estimated fisher survival and cause-specific mortality in Leeds and Grenville County, Ontario, from 2003–2005. The overall 2-year survival rate (95% CI) was 0.35 (0.21-0.56, n = 59). We attributed observed mortality rates mainly to natural causes (28.6%) and nuisance trapping (21.4%). Given reported recruitment rates, our estimated fisher mortality has likely led to population declines in the study area, especially during 2003. Thus, we do not recommend an increase in fisher harvest quotas in the study area at this time. 相似文献