The hemolymph proteome of the honeybee: Gel‐based or gel‐free?

The honeybee has an invaluable economic impact and is a model for studying immunity, development and social behavior. The recent sequencing and annotation of the honeybee genome facilitates the study of its hemolymph, which reflects the physiological condition and mediates immune responses. We aimed at making a proteomic reference map of honeybee hemolymph and compared gel‐free and gel‐based techniques. One hundered and four 2‐DE spots corresponding to 62 different proteins were identified. Eight identical 2‐DLC experiments resulted in the identification of 32 unique proteins. One repeat was clearly not representative for the potential of the given 2‐DLC setup. Only 27% of the identified hemolymph proteins were found by both techniques. In addition, we found proteins of three different viruses which creates possibilities for biomarker design. Future hemolymph studies will benefit from this work.     

The origin of interlocus sexual conflict: is sex‐linkage important?

Sexual conflict has been proposed as a potential selective agent in the evolution of a variety of traits. Here, we present a simple model that investigates the initial conditions under which sex-linked and sex-limited harming alleles can invade a population. In this paper, we expand previous threshold models to study how sex-linkage and sex determination mechanisms affect the spreading conditions of a harming allele. Our models provide new insights into how sexual conflict could originate, showing that in diploid organisms the probability of a new harming allele spreading is independent of both the genetic sex determination system and the dominance relationships. However, the incidence of interlocus sexual conflicts in the initial steps of the invasion critically depends on the inheritance system.     

Are island‐like systems biologically similar to islands? A review of the evidence

Islands are geographically defined as land masses completely surrounded by water, and island systems have been used as models for many biogeographic, ecological, and evolutionary theories ever since Darwin's pioneering efforts. However, their biological definition is complex. Over the past few decades these theories have been applied to many study systems that only share some geographic features with island systems. These features include spatial fragmentation, limited area, spatial and temporal isolation from adjacent parts of the system, and low connectivity between different parts within the system, to mention just a few. These systems vary in their form, the matrix that surrounds them, the factors defining their borders, the extent of insularity they impose on the different taxa, and their geological similarity to different types of actual islands. Here, I seek to understand whether such island‐like systems (ILS) function biologically as true islands. In the first part, I describe the wide diversity of ILS suggested in the literature and the variation in the features that define their insularity. In the second part, I review the extent to which the main theories of island biology are applicable to these systems: species–area and species–isolation relationships, community composition, evolutionary radiations, and the extent of endemism and genetic diversity. In the third and final part, I suggest a new conceptual framework within which to classify and study the biology of ILS, as well as practical future research directions. I conclude that the term ‘biological island’ is a multi‐faceted concept, loosely related to its geographical definition. As ILS are often less isolated than true islands, and their biological patterns are only partly similar to those of true islands (and even this is true only for some ILS) the use of the term ‘island’ to describe any isolated habitat is therefore inappropriate.     

The P-glycoprotein homologues of Plasmodium falciparum: Are they involved in chloroquine resistance?

Chloroquine has been the mainstay of antimalarial chemotherapy but the rapid spread of resistance to this important drug has now compromised its efficacy. The mechanism of chloroquine resistance has not been known but recent evidence from Plasmodium falciparum, the causative agent of the most severe form of human malaria, suggested similarities to the multidrug resistance phenotype (MDR) of mammalian tumour cells which is mediated by a protein molecule termed P-glycoprotein. Two mdr genes (pfmdr1 and pfmdr2) encoding P-glycoprotein homologues have been identified in P. falciparum and one of these (pfmdr1) has several alleles that have been linked to the chloroquine resistance phenotype. In contrast analysis of a genetic cross between chloroquine-resistant and -sensitive P. falciparum has suggested that the genes encoding the known P-glycoprotein homologues are not linked. This review outlines the similarities of the chloroquine resistance phenotype with the MDR phenotype of mammalian tumour cells and explores the possible role of the pfmdr genes.     

Are Assemblages of Aquatic‐Breeding Anurans (Amphibia) Niches Structured or Neutral?

Local niche‐based processes and dispersal are important determinants of assemblage composition and species diversity. However, there is no consensus about the relative importance of niche and spatial processes to explain the distribution of anuran species in tropical systems. In our study, we analyzed the niche and neutral effects on anuran assemblages and found that biotic interactions were a predictor of assemblage structure. The Eltonian concept of niche was the best predictor for the structure of aquatic‐breeding anuran assemblages, as species tended to co‐occur more often than would be expected by chance. We suggest that the lack of environmental effect could be explained by differences in the pattern of movement between arboreal and non‐arboreal anurans. Once there is a reduction in the number of arboreal anurans in open areas, the importance of habitat heterogeneity to explain assemblage composition should decrease. The lack of correlation between the spatial component in our model and species composition is evidence that spatial processes, such as migration, did not play a major role in structuring local assemblages. Anurans are generally assumed as having poor dispersal ability, yet this assumption is not true for all anuran species. We suggest that future studies should include key behavioral traits, such as site fidelity and homing behavior, as these traits can represent the dispersal abilities of anurans and dispersal ability seems to be important when we try to predict patterns of anuran distribution.     

The failed invasion of Harmonia axyridis in the Azores,Portugal: Climatic restriction or wrong population origin?

We tested two questions:(i)whether the climatic conditions of the Azorean Islands in Portugal may have restricted the invasion of Harmonia axyridis across this archipelago and(ii)determine what population of this species could have a higher probability of invading the islands.We used MaxEnt to project the climate requirements of different H.axyridis populations from three regions of the world,and the potential global niche of the species in the Azorean islands.Then we assessed the suitability of the islands for each of the three H.axyridis populations and global potential niche through histograms analysis,Principal Component Analysis(PCA)of climate variables,and a variable-by-variable assessment of the suitability response curves compared with the climatic conditions of the Azores.Climatic conditions of the Azores are less suitable for the U.S.and native Asian populations of H.axyridis,and more suitable for European populations and the global potential niche.The PCA showed that the climatic conditions of the islands differed from the climatic requirements of H.axyridis.This difference is mainly explained by precipitation of the wettest month,isothermality,and the minimum temperature of the coldest month.We concluded that the climatic conditions of the Azores could have influenced the establishment and spread of H.axyridis on these islands from Europe.Our results showed that abiotic resistance represented by the climate of the potentially colonizable zones could hinder the establishment of invasive insects,but it could vary depending of the origin of the colonizing population.     

Are tyrosine residues involved in the photoconversion of the water‐soluble chlorophyll‐binding protein of Chenopodium album?

Non‐photosynthetic and hydrophilic chlorophyll (Chl) proteins, called water‐soluble Chl‐binding proteins (WSCPs), are distributed in various species of Chenopodiaceae, Amaranthaceae, Polygonaceae and Brassicaceae. Based on their photoconvertibility, WSCPs are categorised into two classes: Class I (photoconvertible) and Class II (non‐photoconvertible). Chenopodium album WSCP (CaWSCP; Class I) is able to convert the chlorin skeleton of Chl a into a bacteriochlorin‐like skeleton under light in the presence of molecular oxygen. Potassium iodide (KI) is a strong inhibitor of the photoconversion. Because KI attacks tyrosine residues in proteins, tyrosine residues in CaWSCP are considered to be important amino acid residues for the photoconversion. Recently, we identified the gene encoding CaWSCP and found that the mature region of CaWSCP contained four tyrosine residues: Tyr13, Tyr14, Tyr87 and Tyr134. To gain insight into the effect of the tyrosine residues on the photoconversion, we constructed 15 mutant proteins (Y13A, Y14A, Y87A, Y134A, Y13‐14A, Y13‐87A, Y13‐134A, Y14‐87A, Y14‐134A, Y87‐134A, Y13‐14‐87A, Y13‐14‐134A, Y13‐87‐134A, Y14‐87‐134A and Y13‐14‐87‐134A) using site‐directed mutagenesis. Amazingly, all the mutant proteins retained not only chlorophyll‐binding activity, but also photoconvertibility. Furthermore, we found that KI strongly inhibited the photoconversion of Y13‐14‐87‐134A. These findings indicated that the four tyrosine residues are not essential for the photoconversion.     

The Comstockiella system of chromosome behavior in the armored scale insects (Coccoïdea: Diaspididae)

Summary The Comstockiella chromosome system occurs in the armored scale insects and the closely allied palm scales. During development of the males, the paternal chromosome set becomes heterochromatic and remains so until spermatogenesis. With the exception of one chromosome, the heterochromatic complement loses its differential aspect during early spermatogenesis and its members pair with their euchromatic homologues There is but one division during which the two components of each bivalent separate to opposite poles. Both division products form sperm.One pair of chromosomes, the D pair, always shows differential behavior. The D pair usually does not form a bivalent. The heterochromatic homologue, D^H, divides equationally and is eliminated by anaphase lagging or telophase ejection; its daughter halves remain as pycnotic residues during the early phases of spermiogenesis. The euchromatic homologue, D^E, also divides equationally to contribute to both of the telophase nuclei. Compensation for the division of the D^E univalent may occur during either the early or late phases of spermatogenesis.In some species the D pair is a fixed entity, analogous to the sex chromosomes in this regard. In other species, more than one pair may be elected to the D role, but only one at a time, and always the same one within each cyst.Taxonomic evidence indicates the Comstockiella system was derived from the lecanoid system, previously known from the work of the Schraders and others. In the lecanoid system, the paternally derived heterochromatic set divides equationally, along with the euchromatic set, during the first spermatogenic division. During the second spermatogenic division, the two sets are segregated from each other. The two euchromatic derivatives form sperm while the heterochromatic derivatives persist for a while as pycnotic residues. Both the lecanoid and Comstockiella systems occur in some species often in the same testis, but only one of the two systems within any one cyst.The discussion is devoted to an analysis of the mode of inheritance expected in the Comstockiella system and its evolutionary derivation. The Comstockiella system may have been derived in a step-by-step fashion from the lecanoid. The two systems differ by four processes which occur at spermatogenesis in the Comstockiella but not the lecanoid system; these are (1) deheterochromatization, (2) chromosome pairing, (3) compensation for the extra division of the D^E chromosome, and (4) lagging or ejection to eliminate the D^H chromosome.In addition, the residual genetic effects of the heterochromatic set may have undergone considerable change before the lecanoid system could evolve into a Comstockiella. Once the evolutionary step were otherwise possible, mechanistic features would aid and abet the emergence of the new system even though it lacked immediate selective advantage.The variable-D aspect of some examples of the Comstockiella system cannot be readily understood in terms of known examples of chromosome behavior; an admittedly highly speculative hypothesis is offered in an attempt to explain the situation.The diaspidid system, in which the paternal chromosomes are eliminated at late cleavage, is believed on taxonomic grounds to have stemmed from the Comstockiella, and forms the final stage of the four-step evolutionary sequence. Necessary changes for the derivation of the diaspidid system from the Comstockiella are discussed.This work was begun during the tenure of a Guggenheim Memorial Fellowship, 1956–57, and has subsequently been supported in part by grants from the National Science Foundation (G-4497 and G-9772).     

To speciate,or not to speciate? Resource heterogeneity,the subjectivity of similarity,and the macroevolutionary consequences of niche‐width shifts in plant‐feeding insects

Coevolutionary studies on plants and plant‐feeding insects have significantly improved our understanding of the role of niche shifts in the generation of new species. Evolving plant lineages essentially constitute moving islands and archipelagoes in resource space, and host shifts by insects are usually preceded by colonizations of novel resources. Critical to hypotheses concerning ecological speciation is what happens immediately before and after colonization attempts: if an available plant is too similar to the current host(s), it simply will be incorporated into the existing diet, but if it is too different, it will not be colonized in the first place. It thus seems that the probability of speciation is maximized when alternative hosts are at an ‘intermediate’ distance in resource space. In this review, I wish to highlight the possibility that resource similarity and, thus, the definition of ‘intermediate’, are subjective concepts that depend on the herbivore lineage's tolerance to dietary variation. This subjectivity of similarity means that changes in tolerance can either decrease or increase speciation probabilities depending on the distribution of plants in resource space: insect lineages with narrow tolerances are likely to speciate by ‘island‐hopping’ on young, species‐rich plant groups, whereas more generalized lineages could speciate by shifting among resource archipelagoes formed by higher plant taxa. Repeated and convergent origins of traits known to broaden or to restrict host‐plant use in multiple different insect groups provide opportunities for studying how tolerance and resource heterogeneity may interact to determine speciation rates.     

The isotopic biosignatures of photo‐ vs. thiotrophic bivalves: are they preserved in fossil shells?

Symbiont‐bearing and non‐symbiotic marine bivalves were used as model organisms to establish biosignatures for the detection of distinctive symbioses in ancient bivalves. For this purpose, the isotopic composition of lipids (δ¹³C) and bulk organic shell matrix (δ¹³C, δ³⁴S, δ¹⁵N) from shells of several thiotrophic, phototrophic, or non‐symbiotic bivalves were compared (phototrophic: Fragum fragum, Fragum unedo, Tridacna maxima; thiotrophic: Codakia tigerina, Fimbria fimbriata, Anodontia sp.; non‐symbiotic: Tapes dorsatus, Vasticardium vertebratum, Scutarcopagia sp.). ?¹³C values of bulk organic shell matrices, most likely representing mainly original shell protein/chitin biomass, were depleted in thio‐ and phototrophic bivalves compared to non‐symbiotic bivalves. As the bulk organic shell matrix also showed a major depletion of δ¹⁵N (down to –2.2 ‰) for thiotrophic bivalves, combined δ¹³C and δ¹⁵N values are useful to differentiate between thio‐, phototrophic, and non‐symbiotic lifestyles. However, the use of these isotopic signatures for the study of ancient bivalves is limited by the preservation of the bulk organic shell matrix in fossils. Substantial alteration was clearly shown by detailed microscopic analyses of fossil (late Pleistocene) T. maxima and Trachycardium lacunosum shell, demonstrating a severe loss of quantity and quality of bulk organic shell matrix with time. Likewise, the composition and δ¹³C‐values of lipids from empty shells indicated that a large part of these compounds derived from prokaryotic decomposers. The use of lipids from ancient shells for the reconstruction of the bivalve's life style therefore appears to be restricted.     

Is the population turnover of patchy‐distributed annuals determined by dormancy dynamics or dispersal processes?

In species with fragmented distribution, regional turnover dynamics is given by the processes of local population extinction and patch (re)colonization by migrants spreading from neighboring occupied patches. In plants with dormant stages (e.g. seeds) and limited dispersal capacity, regional dynamics based on dispersal processes can be overridden by pseudo-turnover determined by signals inducing or breaking dormancy (e.g. due to changes in habitat quality) resulting in a low importance of habitat configuration and size.
In this study, I investigated the turnover dynamics of 5 annual plant species growing on ant mounds of Lasius flavus over three years. I analyzed whether the grassland-scale dynamics of these annuals is influenced by dispersal processes, or alternatively, by pseudo-turnover of soil seed populations. For that purpose I 1) searched for populations formed from soil seeds only, 2) compared the relative contribution of the soil seed bank and seed rain for population restoration after disappearance from the vegetation and 3) investigated whether colonization and extinction events are affected by patch isolation. I assumed if population turnover was rather a result of the soil seed bank dynamics then spatial effects would be hard to detect.
In spite of the presence of populations formed from soil seed and the relatively more important soil seed bank for potential population reestablishment, turnover dynamics followed the predictions of metapopulation theory. Population appearance was more probable in larger and less isolated patches. Probability of disappearance increased with decrease of population size that was negatively influenced by the patch size and its isolation. These findings indicate dispersal processes to be important in the turnover dynamics and only limited contribution of soil seed populations. Their small effectiveness is probably related to the low chance of recurrent disturbance on the mound surface.     

The evolution of ecological specialization in southern African ungulates: competition‐ or physical environmental turnover?

Using long‐term diet reconstructions spanning the past one million years, we contrast hypotheses that biotic interactions versus physical environmental changes are primary drivers of evolutionary turnover in mammals. We use stable carbon (δ¹³C) and oxygen (δ¹⁸O) isotope ratios in tooth enamel carbonate to trace herbivore niche shifts through the Late Quaternary Land Mammal Ages (LMAs) of grassland savannas in the South African interior (Cornelian‐1.0 to 0.6 Ma; Florisian‐500 to 10 ka; and Holocene/modern). Data reveal niche separation amongst closely related coeval taxa, and dispersals through time into empty niche spaces following extinctions. This suggests a primary role of competitive exclusion and niche displacement for speciation and extinctions in these early grassland environments. However, niche changes through time show a similar trend in many taxa, entailing increased δ¹³C (elevated C₄ grass consumption) from the Cornelian to the Florisian, and from the Florisian to the Holocene/modern, and elevated δ¹⁸O in Holocene/modern taxa that reflect global aridification around the terminal Pleistocene. Commonality in isotopic trends implies universal environmental forcing of ecological, and ultimately macroevolutionary, turnover. Yet some taxa shift from a mixed C₃/C₄ diet in the Florisian to a near‐pure C₃ diet today. Indeed, we find that while δ¹³C data are normally distributed for Cornelian fossils, non‐normal distributions characterize more recent time intervals. Such distributions are in line with the bimodal distribution of δ¹³C and diet in contemporary African ungulates. Thus, while environmental forcing did not, by necessity, lead to increases in C₄ intake, the results show changes from mixed to more specialized diets. We propose that this niche specialization was a function of long‐term exposure to C₄ grasslands, consistent with predictions that relatively high metabolic demands of C₄ grazing in subtropical environments forced the differentiation of herbivores into one of two highly specialized feeding niches, i.e. C₃ browsing or C₄ grazing.     

Trophic control of mesopredators in terrestrial ecosystems: top‐down or bottom‐up?

It has been argued that widespread extinctions of top predators have changed terrestrial ecosystem structures through mesopredator release, where increased abundances of medium-sized predators have detrimental effects on prey communities. This top-down concept has received much attention within conservation biology, but few studies have demonstrated the phenomenon. The concept has been criticized since alternative explanations involving bottom-up impacts from bioclimatic effects on ecosystem productivity and from anthropogenic habitat change are rarely considered. We analyse the response of a mesopredator (the red fox) to declines in top predators (wolf and Eurasian lynx) and agricultural expansion over 90 years in Sweden, taking bioclimatic effects into account. We show a top-down mesopredator release effect, but ecosystem productivity determined its strength. The impacts of agricultural activity were mediated by their effects on top predator populations. Thus, both top-down and bottom-up processes need to be understood for effective preservation of biodiversity in anthropogenically transformed ecosystems.     

ADARs: allies or enemies? The importance of A‐to‐I RNA editing in human disease: from cancer to HIV‐1

Adenosine deaminases acting on RNA (ADARs) are enzymes that convert adenosine (A) to inosine (I) in nuclear‐encoded RNAs and viral RNAs. The activity of ADARs has been demonstrated to be essential in mammals and serves to fine‐tune different proteins and modulate many molecular pathways. Recent findings have shown that ADAR activity is altered in many pathological tissues. Moreover, it has been shown that modulation of RNA editing is important for cell proliferation and migration, and has a protective effect on ischaemic insults. This review summarises available recent knowledge on A‐to‐I RNA editing and ADAR enzymes, with particular attention given to the emerging role played by these enzymes in cancer, some infectious diseases and immune‐mediated disorders.     

Is the early left‐right axis like a plant,a kidney,or a neuron? The integration of physiological signals in embryonic asymmetry

Embryonic morphogenesis occurs along three orthogonal axes. While the patterning of the anterior-posterior and dorsal-ventral axes has been increasingly well-characterized, the left-right (LR) axis has only relatively recently begun to be understood at the molecular level. The mechanisms that ensure invariant LR asymmetry of the heart, viscera, and brain involve fundamental aspects of cell biology, biophysics, and evolutionary biology, and are important not only for basic science but also for the biomedicine of a wide range of birth defects and human genetic syndromes. The LR axis links biomolecular chirality to embryonic development and ultimately to behavior and cognition, revealing feedback loops and conserved functional modules occurring as widely as plants and mammals. This review focuses on the unique and fascinating physiological aspects of LR patterning in a number of vertebrate and invertebrate species, discusses several profound mechanistic analogies between biological regulation in diverse systems (specifically proposing a nonciliary parallel between kidney cells and the LR axis based on subcellular regulation of ion transporter targeting), highlights the possible importance of early, highly-conserved intracellular events that are magnified to embryo-wide scales, and lays out the most important open questions about the function, evolutionary origin, and conservation of mechanisms underlying embryonic asymmetry.     

The naturalization to invasion transition: Are there introduction‐history correlates of invasiveness in exotic plants of Australia?

Of the large number of exotic plant species that become naturalized in new geographic regions, only a subset make the transition to become invasive. Identifying the factors that underpin the transition from naturalization to invasion is important for our understanding of biological invasions. To determine introduction‐history correlates of invasiveness among naturalized plant species of Australia, we compared geographic origin, reason for introduction, minimum residence time and growth form between naturalized non‐invasive species and naturalized invasive plant species. We found that more invasive species than expected originated from South America and North America, while fewer invasive species than expected originated from Europe and Australasia. There was no significant difference between invasive and non‐invasive species with respect to reason for introduction to Australia. However, invasive species were significantly more likely to have been resident in Australia for a longer period of time than non‐invasive species. Residence times of invasive species were consistently and significantly higher than residence times of non‐invasive species even when each continent of origin was considered separately. Furthermore, residence times for both invasive and non‐invasive species varied significantly as a function of continent of origin, with species from South America having been introduced to Australia more recently on average than species from Europe, Australasia and North America. We also found that fewer invasive species than expected were herbs and more invasive species than expected were primarily climbers. Considered together, our results indicate a high propensity for invasiveness in Australia among exotic plant species from South America, given that they appear in general capable of more rapid shifts to invasiveness than aliens from other regions. Furthermore, our findings support an emerging global generality that introduction‐history traits must be statistically controlled for in comparative studies exploring life‐history and ecological correlates of invasion success.     

Utrophin is lacking at the neuromuscular junctions in the extraocular muscles of normal cat: artefact or true?

Extraocular muscles (EOM) are typically spared in Duchenne muscular dystrophy. We hypothesized that this might be due to different patterns of utrophin expression. The expression of utrophin was examined in EOM of normal cats using immunohistochemical methods and Western blot. For detecting acetylcholine receptors (AChR), we used -bungarotoxin. Surprisingly, -bungarotoxin failed to stain the AChR and no expression of utrophin could be detected at the neuromuscular junctions. Our study could indicate that the expression of utrophin is dependent on the structure of the AChR.