Tulip allergens in Alstroemeria and some other liliiflorae

A study has been made of the occurrence of tulip allergens (tuliposides) among several plant genera belonging to the Liliiflorae. All species of the genera Alstroemeria, Erythronium and Tulipa can be considered potentially allergenic (tuliposide-A). Tuliposide-B is more generally distributed and occurs in Lilium, Notholirion and Calochortus as well. Small amounts of both tuliposides are found in Fritillaria. A brief discussion is given of the systematic implications of the results.     

Phylogenetic systematics of Erythronium (Liliaceae): morphological and molecular analyses

For a nearly complete set of species of Erythronium (Liliaceae), we examined two plastid loci (the rps16 intron and the 5′ trnK intron, excluding the matK exon), one nuclear locus (nrITS) and morphology to evaluate species relationships and that of Erythronium to Amana, the putatively most closely allied genus. A matrix of morphological characters was developed through observation of around 900 living and herbarium specimens; evolution of these was examined using character optimization on the combined (total‐evidence) tree. Parsimony methods were used to examine the morphological and molecular data sets produced, both separately and in combination, with Bayesian methods also used on the molecular data sets. These established that the genus is probably sister to Amana (although most analyses placed Amana inside Erythronium) and that Tulipa is sister to the pair of Erythronium and Amana. Within Erythronium, there are three strongly supported geographically distinct clades: (1) Eurasian and (2) eastern and (3) western North American. Separation of species in these three clades is less clear, particularly among the western North American taxa. © 2012 The Linnean Society of London, Botanical Journal of the Linnean Society, 2012, ●●, ●●–●●.     

Contributions to the pollen morphology and taxonomy of the Liliaceae

Pollen of 34 species from 7 genera of the Liliaceae were examined by LM and SEM with respect to the taxonomy of the family. Detailed pollen­morphological characteristics are given for all genera in the family on the basis of the results presented here together with data from the literature. The genera Tulipa and Lilium are heterogeneous in both aperture type and exine ornamentation. Pollen of Tulipa is monosulcate, 3-aperturate or inaperturate, with a microreticulate-striate, reticulate-implecto-striate, scabrate, perforate-rugulate, perforate-striate exine surface. Pollen of Lilium is monosulcate and 3-porate with a macroreticulate exine. The other genera are homogeneous in possessing of single longitudinal aperture (type monosulcate). The pattern of exine ornamentation and the structure of the aperture and its membrane are peculiar features for species and genera. Pollen of Erythronium and Tulipa are occasionally operculate, while in other representatives of the Liliaceae an operculum is lacking. Pollen morphological data support the division of the family into 3 tribes, namely Lloydieae, Lilieae, and Tulipeae.     

Comparative Genome Analysis and Phylogenetic Relationship of Order Liliales Insight from the Complete Plastid Genome Sequences of Two Lilies (Lilium longiflorum and Alstroemeria aurea)

Monocots are one of the most diverse, successful and economically important clades of angiosperms. We attempt to analyse the complete plastid genome sequences of two lilies and their lengths were 152,793bp in Lilium longiflorum (Liliaceae) and 155,510bp in Alstroemeria aurea (Alstroemeriaceae). Phylogenetic analyses were performed for 28 taxa including major lineages of monocots using the sequences of 79 plastid genes for clarifying the phylogenetic relationship of the order Liliales. The sister relationship of Liliales and Asparagales-commelinids was improved with high resolution. Comparative analyses of inter-familial and inter-specific sequence variation were also carried out among three families of Liliaceae, Smilacaceae, and Alstroemeriaceae, and between two Lilium species of L . longflorum and L . superbum . Gene content and order were conserved in the order Liliales except infA loss in Smilax and Alstroemeria . IR boundaries were similar in IRa, however, IRb showed different extension patterns as JLB of Smilax and JSB in Alstroemeria . Ka/Ks ratio was high in matK among the pair-wise comparison of three families and the most variable genes were psaJ, ycf1, rpl32, rpl22, matK, and ccsA among the three families and rps15, rpoA, matK, and ndhF between Lilium.     

Reassessment of diversity and analysis of distribution in Tulipa (Liliaceae) in Uzbekistan

The diversity and distribution of the genus Tulipa in Uzbekistan are discussed; 34 taxa of Tulipa are recognized in Uzbekistan. The taxa were mapped using GIS software and their distributions were analyzed. Six species are endemic to the country. A national check‐list of Tulipa was created based on the classification developed by Zonneveld (2009). ‘Hot spot’ areas of tulip diversity in Uzbekistan are western Tien‐Shan (18 taxa), the western Pamir–Alay mountains (18 taxa) and the Turan lowland (5 taxa). An assessment of rare tulip species according to IUCN red list categories and criteria was performed for the first time for Uzbekistan. Evaluation of the latest classification of Tulipa clearly shows that further studies are required to arrive at a natural classification of the genus.     

Membrane-bound ATPase of intact vacuoles and tonoplasts isolated from mature plant tissue

Intact vacuoles were isolated from petals of Hippeastrum and Tulipa (Wagner G.J. and Siegelman, H.W. (1975) Science 190, (1298–1299). The ATPase activity of fresh vacuole suspensions was found to be 2–3 times that of protoplasts from the same tissue. 70–80% of the ATPase activity of intact vacuoles was recovered in tonoplast preparations. The antibiotic Dio-9 at 6 μg/10⁶ vacuoles or protoplasts causes 40% inhibition. However, only the protoplast ATPase is sensitive to oligomycin. N,N′-dicyclohexylcarbodiimide (DCCD) slightly stimulates ATPase activity in both vacuole and protoplast suspensions, whereas ethyl-3-(3-dimethylaminopropyl carbodiimide) (EDAC) strongly inhibits.Spectrophotometric studies show that in the petal the vacuolar contents have a pH of 4.0 for Tulipa and 4.3 for Hippeastrum, whereas the intact isolated vacuole has an internal pH of 7.0 (in pH 8.0 buffer) for Tulipa and about 7.3 for Hippeastrum. Internal ion concentrations of 150, 46, 30, 30 and 6 mM were found for K⁺, Na⁺, Mg²⁺, Cl^?, and Ca²⁺ respectively, which are about the same as those in protoplasts.     

The proliferous species of Elaphoglossum (Elaphoglossaceae) and their relatives

Thirteen taxa of the fern genusElaphoglossum reproduce vegetatively by a bud borne at the retuse apex of the sterile frond. These and six of their nonproliferous close relatives, all of tropical America, are discussed and described. All but one belong to various species groups in the closely allied sectionsSetosa andUndulata, the remaining one belonging to sectionLepidoglossa. Fourteen of the taxa are new:E. boryanum var.eutecnum, E. cardioglossum, E. entecnum, E. exsertipes, E. herpestes, E. inciens, E. nanoglossum, E. omissum, E. phoras, E. phyllitidis, E. plumosum f. maternum, E. pseudoboryanum, E. rufum, andE. wardiae.     

Subcellular localization of enzymes of anthocyanin biosynthesis in protoplasts

Flavanone synthase, chalcone-flavanone isomerase and UDP-glucose; anthocyanidin-3-O-glucosyltransferase activities of protoplasts and subcellular fractions of protoplasts of Hippeastrum and Tulipa were investigated. Subcellular fractions studied were intact vacuoles, cytosol and particulate components of protoplasts less the vacuole. The cytosol fraction had the highest activity of the three enzymes studied. Results similar to those found for Hippeastrum were obtained with fractions from leaves and petals of Tulipa. The increase in flavanone synthase activity in the cytosol fraction from petals of Hippeastrum during development paralleled the increase in anthocyanin content of the petals.     

Totipotency in Tissue Explants and Callus of Some Members of the Liliaceae, Iridaceae, and Amaryllidaceae

In vitro responses of twelve species of bulbs and conns werecompared. Plantlets could be induced directly without interveningcallus on stem tissue in nine species, on ovary tissue in fivespecies, and on leaf tissue in four species. In Gladiolus, Hyacinthus,Muscari, Ornithogahim, and Scilla plantlets were formed withoutgrowth factors added to the Murashige and Skoog medium. In Hippeastrum,Schizoslylis, Sparaxis, and Ipheion auxin was required. No plantletscould be induced directly on explants of growing tissue of Freesia,Tulipa, or Narcissus. Adventitious plantlets could be inducedon pieces of bulb or corm from ten species but such materialwas difficult to free from contamination. Callus was obtained from all species except Tulipa and Hippeastrum.Plantlets could be regenerated from callus except that of Gladiolus,Sparaxis, and Schizostylis. Differences in responses of the twelve species tend to cut acrossthe three families and no simple relation is evident betweenthe natural rate of vegetative increase and the in vitro behaviour.     

Anthocyanidin glycosides from the flowers of Alstroemeria

Three anthocyanins were isolated from the red flowers of four cultivars of Alstroemeria. Two compounds were novel anthocyanidin glycosides; the 3-rutinoside and 3-monoglucoside of 6-hydroxycyanidin. Cyanidin 3-rutinoside was also present in the petals.     

Distribution of seed fatty acids and the taxonomy of Vochysiaceae

The distribution of seed fatty acids of 16 species of Vochysiaceae native to Brazil, corresponding to the genera Callisthene, Qualea, Salvertia and Vochysia, and amounting to 57 samples, were studied. The methyl esters of the fatty acids were analyzed by GC–EIMS. For most species, fatty acid patterns are seemingly useful for species characterization. Intraspecific variability of samples of Salvertia grandiflora seems to have geographic significance. With one exception, palmitic and oleic acids predominate in the fatty acids distribution of Qualea and Callisthene. Q. grandiflora possesses exceptional amounts of lauric acid. Relatively high amounts of either C_20–C₂₂ (saturated or monounsaturated) or stearic acids characterize Salvertia and Vochysia. UPGMA analysis of fatty acids distribution based on Euclidean distances resulted in a cluster combining Callisthene and all samples of Qualea, except Q. grandiflora. Samples of Vochysia are combined into several clusters. The dendrogram is suggestive of taxonomic relationships, allowing the distinction of taxa down to the sub-sectional level. V. pyramidalis, from section Ciliantha, subsection Ferrugineae, has closer chemical affinities with species of section Vochysiella, subsection Decorticantes. Comparing with monomers of polysaccharide seed cell walls of Vochysiaceae, fatty acid patterns revealed lower intraspecific variability and higher taxonomic resolution.     

Molecular analysis of species of Tulipa L. from Iran based on ISSR markers

Molecular characterization of Tulipa L. species can elucidate the relationships among the species and provide more information about the taxonomy of this valuable genus. In this study, the genetic relationship among 39 Tulipa accessions from Khorassan and Yazd Provinces, located in east and northeast Iran, were analyzed using inter-simple sequence repeat (ISSR) primers. Ten selected ISSR primers from 20 screened primers generated a total of 97 polymorphic DNA bands. Unweighted pair-group method of cluster analysis based on Dice similarity values separated the accessions into nine groups. Seven species were recognized within these groups, and T.?micheliana Hoog was the most frequently encountered species. The subgroups formed within both T.?micheliana and T.?lehmanniana Merckl. revealed a low level of diversity within these species. T.?biebersteiniana Schultes & Schultes fil. and T.?biflora Pallas accessions made a separate clusters. The grouping of accessions was generally consistent with principal coordinate analysis (PCA) and clearly showed the position of species in the subgenera and sections of Tulipa. These results clearly showed the usefulness of DNA fingerprinting for identification of Tulipa accessions, and it is imperative to collect and characterize more genetic variability from the other distribution areas of this genus.     

The Biochemical of Tetradium,Euodia and Melicope and their significance in the Rutaceae

From the stem and root barks of Tetradium glabrifolium (Rutaceae) benzophenanthridine alkaloids have been isolated together with furoquinoline alkaloids, coumarins and limonoids. The occurrence of the l-benzyltetrahydroisoquinolinederived benzophenanthridines adds Tetradium to the small group of rutaceous genera (Fagaropsis, Phellodendron, Toddalia, Zanthoxylum) known to produce alkaloids of this type. These findings support Hartley's decision to reassign taxa from Euodia (sensu Engler) into the three genera Tetradium, Euodia s. s. and Melicope and his contention that Tetradium is closely allied to Zanthoxylum and Phellodendron, with which it shares several unusual chemical characters. Hartley's re-alignment of Tetradium, which cuts across Engler's sub-families Rutoideae and Toddalioideae, is therefore sustained by the known distribution of secondary metabolites, whilst available information suggests a wide disparity between the chemical profiles of Tetradium and Melicope. The chemosystematic significance of the addition of Tetradium to the 1-benzyltetrahydroisoquinoline producing genera and the potential of these taxa to have acted as a starting point for biochemical evolution within the Rutaceae is discussed.     

Pollen morphology of some endemic Turkish Centaurea L. (Asteraceae, section Phaloletis) and their taxonomic value

In this study, the detailed pollen morphological structures of some endemic Turkish species of Centaurea amaena Boiss., C. antalyense H. Duman & A. Duran, C. aphrodisea Boiss., C. hierapolitana Boiss., C. luschaniana Heimerl, C. lycia Boiss., C. tossiensis Freyn. Et Sint., and C. wagenitzii Hub.-Mor. (Asteraceae, section Phaloletis) were studied under light microscopy (LM) and scanning electron microscopy (SEM) for the first time. LM and SEM investigations showed that the pollen grains of eight taxa are more or less spheroidal-subprolate, the amb triangular and tricolporate. The exine sculpture is tectate, microechinate-scabrate in the pollen of Centaurea taxa. Spinules are less dense in Centaurea amaena, C. antalyense, C. hierapolitana, and C. lycia, but they are more dense in C. aphrodisea, C. luschaniana, C. tossiensis, and C. wagenitzii. Spinule dimensions are different from each other. The exine has one layer of columellae beneath the spines. We determined all taxa that have the Helianthoid type. Exine sctructure and sculpture as well as spine density and dimensions in Asteraceae are the most reliable characteristics for discriminating taxa.     

Molecular phylogenetic analysis of Tulipa (Liliaceae) based on noncoding plastid and nuclear DNA sequences with an emphasis on Turkey

We investigated the phylogenetic relationships in Tulipa in Turkey using DNA sequences from the plastid trnL‐trnF region and the internal transcribed spacer (ITS) of nuclear ribosomal DNA. We generated trnL‐trnF and nuclear ITS sequences for 11 Tulipa spp. from Turkey and compared the utility of trnL‐trnF and ITS sequences for phylogenetic analysis. Neighbor‐joining, Bayesian and maximum parsimony methods were implemented using the same matrices. Our study of Tulipa based on molecular data revealed congruent results with previous studies. Despite the relatively lower resolution of trnL‐trnF than that of ITS, both sequence matrices generated similar results. Three clades were clearly distinguished, corresponding to subgenera Tulipa, Eriostemones and Orithyia. It is not fully resolved whether Clusianae should be recognized as a separate section of subgenus Tulipa or a distinct subgenus. © 2013 The Linnean Society of London, Botanical Journal of the Linnean Society, 2013, 172 , 270–279.     

Rooting Around the Eutherian Family Tree: the Origin and Relations of the Taeniodonta

Placing early groups into the overall phylogeny of eutherian mammals can be challenging, particularly when the group does not have extant members. We investigated the relationships of the Taeniodonta, an extinct group from the Late Cretaceous through Paleogene of North America. This group has a few purported close relatives, including Cimolestes, Procerberus, and Alveugena, that may form a sequence of ancestors and descendants. The leading hypothesis is that Procerberus gave rise to taeniodonts through Alveugena. We test this hypothesis and analyze relations to known stem and crown Eutheria to determine the place of taeniodonts in eutherian phylogeny. Cladistic analyses were performed using previously published characters and datasets, namely a taeniodont/cimolestid specific dataset and a reanalysis of Wible and colleagues (2009), with added taxa for both. Our studies suggest that taeniodonts arose from Cimolestes through Alveugena, that Procerberus is more distantly related to taeniodonts, and that taeniodonts and their relatives are stem eutherians. We diagnose the Taeniodonta based on these analyses. Other Paleogene groups, especially those allied with Cimolestes such as tillodonts and pantolestans, merit further study. Our findings indicate that stem eutherians such as the Taeniodonta, in addition to crown eutherians, continued to diversify during the Paleogene.     

The systematic value of nuclear genome size for “all” species of Tulipa L. (Liliaceae)

Nuclear genome size, as measured by flow cytometry with propidium iodide, was used to investigate the relationships within the genus Tulipa L. (Liliaceae). More than 400 accessions representing 123 taxa from mainly wild-collected plants were investigated. Most species of Tulipa have the same basic chromosome number, 2n = 2x = 24. However, the somatic DNA 2C value (2C) is shown to range from 32 to 69 pg for the diploids. The largest genome contains roughly 3.4 × 10¹⁰ more base pairs than the smallest and has chromosomes that are more than twice as large. These large differences in the amount of nuclear DNA predict that the hybrids, if any arise, are usually sterile. Depending on the size of the total genome, 1 pg amounts to several thousand genes. Moreover, genome sizes are evaluated here in combination with available morphological, geographical, and molecular data. Therefore, the taxonomy proposed here is not a single-character taxonomy based on genome size alone. The genus Tulipa, as here determined, has 87 species, 29 more than accepted by van Raamsdonk et al. [Acta Hort (ISHS) 430:821–828, 1997], but including 25 species that were not available to them. Of these 87 species, 28 were not seen by Hall (The genus Tulipa, The Royal Horticultural Society, London, 1940) in a living state and placed by him in an addendum. Species of the subgenus Clusianae (Baker) Zonn. differ strongly in nuclear DNA content (DNA 2C value), 32 versus 40–68 pg for all other tulips, and are placed here in a separate subgenus. Also Orithyia, the only group with a style and with only 38–39 pg is placed in a separate subgenus. Therefore, all tulips are attributed to four subgenera, Clusianae (Baker) Zonn., Tulipa, Eriostemones Raamsd., and Orithyia (D. Don) Baker and divided further into 12 sections. Seven of the eight series of section Eichleres (A.D. Hall) Raamsd. are now placed in four sections: (1) section Lanatae (Raamsd.) Zonn., mainly confined to species from the Pamir-Alay and including series Lanatae Raamsd., (2) section Multiflorae (Raamsd.) Zonn. (including series Glabrae Raamsd.), (3) section Vinistriatae (Raamsd.) Zonn. (including series Undulatae Raamsd.), and (4) section Spiranthera Vved. ex Zonn. and Veldk. Triploids, tetraploids, and pentaploids were found in several species. DNA content confirmed the close relationships of the species within the different sections. The rather similar looking and therefore often confused T. armena Boiss. (51.8 pg), T. systola Stapf (56.3 pg), and T. julia K., Koch (61.6 pg) could be clearly distinguished. The same is true for T. biebersteiniana Schult. f. (56.9 pg), T. sylvestris ssp. australis (Link) Pamp. (62.0 pg), and T. primulina Baker (64.6 pg). T. doerfleri Gand. and T. whittalli (Dykes) Hall could be placed as polyploid forms of T. orphanidea Boiss. ex Heldr. On the basis of DNA content, a systematic association between T. julia K. Koch and the triploid T. aleppensis Boiss. and between T. systola Stapf and the triploid T. praecox Tenore was suggested. The new species T. lemmersii Zonn., Peterse, and de Groot is described, and four possible new species are indicated. Genome size as measured by using flow cytometry may conveniently be used to produce systematic data. It is applicable even in the case of dormant bulbs or sterile plants for monitoring the trade in bulbous species.