Comparative research on the cerebroside and sulfocerebroside content of the mammalian brain

Data are presented on cerebroside and sulfocerebroside content of the brain for 31 mammalian species from 8 orders. The increase in concentration of both glycolipids in the brain of mammals in phylogenesis was demonstrated. Low levels of cerebrosides and sulfocerebrosides were found in the brain of lower mammals (Insectivora, Chiroptera) and high ones--in the brain of higher mammals (Carnivora, Primates). Irrespectively from taxonomic position and ecological factors, in the brain of all mammals investigated higher content of cerebrosides with hydroxy acids was found as compared to the content of cerebrosides with normal fatty acids. The ratio of these cerebrosides in the brain of terrestrial mammals is 2-3 times higher than in aquatic and semi-aquatic ones. The data obtained are discussed in relation to the development of the brain of mammals during their phylogenesis.     

Basal metabolic rates in mammals: taxonomic differences in the allometry of BMR and body mass

No single equation adequately describes the allometric relation between body mass and BMR for mammals. Least squares regression of log-transformed data for 248 eutherian species results in a line with a slope (-0.30) significantly different from that of Kleiber's line (-0.25). Interordinal comparisons of least squares regressions of log-transformed BMR and mass suggest that the Insectivora have a significantly steeper slope to their allometric relationship than do most other orders, while the non-insectivore orders are statistically homogeneous with respect to slope. With respect to elevation, Edentata have the lowest BMRs; Marsupialia, Primates and Chiroptera are indistinguishable from each other but above the edentates; Primates, Chiroptera, Rodentia, Lagomorpha and Carnivora form the next highest homogeneous grouping; and Artiodactyla have the highest BMRs, significantly greater than all but Lagomorpha and Carnivora. Analysis of intraordinal variation within the Rodentia suggests significant heterogeneity among families in BMR-mass allometry.     

Comparative studies of retinol transport in plasma

The comparative immunology and biochemistry of plasma retinol transport were studied using radioimmunoassays previously developed for human and for rat retinol-binding protein (RBP). Serum or plasma from 25 species of verebrates, from the mammalian orders Primates, Artiodactyla, Perissodactyla, Carnivora, and Rodentia and from the classes Aves, Amphibia, and Pisces, were assayed. There was a high degree of immunological specificity within a given mammalian order. Sera from seven subhuman primate species tested reacted in the human RBP immunoassay, and sera from four of five rodents reacted in the rat RBP immunoassay. Primate sera failed to react in the rat RBP immunoassay, and rodent sera failed to react in the human RBP immunoassay. Except for a slight reactivity of canine serum in the human RBP immunoassay, other sera showed no immunoreactivity. Using gel filtration, apparent molecular weights were estimated at 60,000-80,000 for the retinol transport systems in whole serum from cow, swine, chicken, and dog. Canine RBP was isolated and partially characterized. Purified canine RBP was generally similar to human and rat RBP with regard to molecular weight (approximately 20,000) and other properties. In plasma, canine RBP circulates as a protein-protein complex of higher apparent molecular weight. The complex remains to be characterized. These data suggest that mammals in general have a retinol transport system similar to the human and rat transport systems but that immunologically important differences in RBP occur among mammalian orders.     

Volume comparisons in the cerebellar complex of primates. II. Cerebellar nuclei

Volumes of medial, interposed, and lateral cerebellar nuclei (MCN, ICN, and LCN) were measured in Insectivora, Scandentia, and Primates, including man. The relative size of the nuclei was expressed in size indices. Insectivora had by far the smallest cerebellar nuclei. The simians, in general, had larger cerebellar nuclei than the prosimians, but there was considerable overlap. From Insectivora to man, the MCN was the least progressive and the LCN the most progressive. The indices are expected to reflect the relative size of the three longitudinal zones of the cerebellum (vermis/MCN, pars intermedius/ICN, hemisphere/LCN). They, together with those of the ventral pons and cerebellum (part I), are discussed in relation to the predominant locomotor pattern of a species, and with reference to evolutionary trends in primate phylogeny.     

Novel mammalian herpesviruses and lineages within the Gammaherpesvirinae: cospeciation and interspecies transfer

Novel members of the subfamily Gammaherpesvirinae, hosted by eight mammalian species from six orders (Primates, Artiodactyla, Perissodactyla, Carnivora, Scandentia, and Eulipotyphla), were discovered using PCR with pan-herpesvirus DNA polymerase (DPOL) gene primers and genus-specific glycoprotein B (gB) gene primers. The gB and DPOL sequences of each virus species were connected by long-distance PCR, and contiguous sequences of approximately 3.4 kbp were compiled. Six additional gammaherpesviruses from four mammalian host orders (Artiodactyla, Perissodactyla, Primates, and Proboscidea), for which only short DPOL sequences were known, were analyzed in the same manner. Together with available corresponding sequences for 31 other gammaherpesviruses, alignments of encoded amino acid sequences were made and used for phylogenetic analyses by maximum-likelihood and Bayesian Monte Carlo Markov chain methods to derive a tree which contained two major loci of unresolved branching details. The tree was rooted by parallel analyses that included alpha- and betaherpesvirus sequences. This gammaherpesvirus tree contains 11 major lineages and presents the widest view to date of phylogenetic relationships in any subfamily of the Herpesviridae, as well as the most complex in the number of deep lineages. The tree's branching pattern can be interpreted only in part in terms of the cospeciation of virus and host lineages, and a substantial incidence of the interspecies transfer of viruses must also be invoked.     

A survey of intraspecific predation within the class Mammalia

The occurrence of cannibalism in mammals was studied during a general review of cannibalism (Polis, 1981). In total, there were 146 references documenting intraspecific predation in 75 species of mammals distributed between seven orders. Of these references, 138 refer to cannibalism whereas eight studies refer to intraspecific killing unaccompanied by cannibalism. Of the papers that specified the identity of both the predator and the prey, approximately 80% referred to infanticide (including cannibalism). It appears that infanticide often functions as part of a reproductive strategy. Juveniles and adults are occasional intraspecific prey for some species of Insectivora, Chiroptera, Primates, Lagomorpha, Rodentia, Carnivora, and Artio-dactyla. Cannibalism was best documented for the carnivores, rodents and primates. In general, cannibalism often occurs during normal predatory activities and is a function of low food availability, environmental stress, and a high density of conspecifics.     

Western Amazonia as a Hotspot of Mammalian Biodiversity Throughout the Cenozoic

A state-of-the-art review of the Cenozoic fossil record from Western Amazonia is provided, based on literature and new data (regarding Paleogene native ungulates). It allows summarizing the evolution and dynamics of middle Eocene–Holocene mammalian guilds, at the level of species, families, and orders. Major gaps in the Western Amazonian mammal record occur in the pre-Lutetian and early Miocene intervals, and in the Pliocene epoch. Twenty-three orders, 89 families, and 320 species are recognized in the fossil record, widely dominated by eutherians from the middle Eocene onward. Probable Allotheria (Gondwanatheria) occur only in the earliest interval, whereas Metatheria and Eutheria are conspicuous components of any assemblage. Taxonomic diversity was probably fairly constant at the ordinal level (~12–14 orders in each time slice considered) and much more variable in terms of family and species richness: if most intervals are characterized by 40–50 co-occurring species and 19–31 co-occurring families, the early Miocene period illustrates a depauperate fauna (21 species, 17 families), strongly contrasting with the late Miocene climactic guild (82 species, 38 families). Recent mammalian taxonomic diversity from Western Amazonia (12 orders, 37 families, and 286 species) is at odds with all past intervals, as it encompasses only three orders of South American origin (Didelphimorphia, Cingulata, and Pilosa) but four North American immigrant orders (Artiodactyla, Perissodactyla, Carnivora, and Lagomorpha). In terms of taxonomic diversity, recent mammalian guilds are fully dominated by small-sized taxa (Chiroptera, Rodentia, and Primates). This overview also confirms the scarcity of large mammalian flesh-eaters in ancient Neotropical mammalian assemblages. The pattern and the timing of mammalian dispersals from northern landmasses into Western Amazonia are not elucidated yet.     

Genetic variability of antigenic structure of the Lpm-protein and alpha2-macroglobulin among non-mustelid mammals

The data on interspecific distribution and antigenic variability of homologues of mink Lpm-protein (Lpm) and alpha 2M-globulin (alpha 2M) among 43 species of 6 orders of mammals are presented. Strong variability of antigenic structure of Lpm and alpha 2M of Rodentia and Artiodactyla orders was established. This fact allows to classify the macroglobulins studied as belonging to the group of evolutionary high-speed plasma globulins. In the plasma of human and green marmoset (Cercopithecus aephiops) the only homologue of alpha 2M was found. The lack of reaction to Lpm in above-mentioned species allows to postulate significant differences between Carnivora and Primates in the organization of this gene cluster. Unique features of antigenic variability of Lpm and alpha 2M were also fixed among other systematical groups tested. Taken together, the data obtained stimulate scientific interest to the study of molecular organization of the Lpm and alpha 2M gene families.     

Lineage-specific evolutionary rate in mammalian mtDNA

The existence of a lineage-specific nucleotide substitution rate in mammalian mtDNA has been investigated by analyzing the mtDNA of all available species, that is, 35 complete mitochondrial genomes from 14 mammalian orders. A detailed study of their evolutionary dynamics has been carried out on both ribosomal RNA and first and second codon positions (P12) of H-strand protein-coding genes by using two different types of relative-rate tests. Results are quite congruent between ribosomal and P12 sites. Significant rate variations have been observed among orders and among species of the same order. However, rate variation does not exceed 1.8-fold between the fastest (Proboscidea and Primates) and the slowest (Perissodactyla) evolving orders. Thus, the observed mitochondrial rate variations among taxa do not invalidate the suitability of mtDNA for drawing mammalian phylogeny. Dependence of evolutionary rate differences on variations in mutation and/or fixation rates was examined. Body size, generation time, and metabolic rate were tested, and no significant correlation was observed between them and the taxon-specific evolutionary rates, most likely because the latter might be influenced by multiple overlapping variable constraints.     

Parallel Phylogenies of Pneumocystis Species and their Mammalian Hosts

ABSTRACT. The single name Pneumocystis carinii consists of an heterogeneous group of specific fungal organisms that colonize a very wide range of mammalian hosts. In the present study, mitochondrial large subunit (mtLSU) and small subunit (mtSSU) rRNA sequences of P. carinii organisms from 24 different mammalian species were compared. The mammals were included in six major groups: Primates (12 species). Rodents (5 species). Carnivores (3 species). Bats (1 species), Lagomorphs (1 species), Marsupials (1 species) and Ungulates (1 species). Direct sequencing of PCR products demonstrated that specific mtSSU and mtLSU rRNA Pneumocystis sequence could be attributed to each mammalian species. No animal harbored P. carinii f. sp. hominis. Comparison of combined mtLSU and mtSSU aligned sequences confirmed cospeciation of P. carinii and corresponding mammalian hosts. P. carinii organisms isolated from mammals of the same zoological group systematically clustered together. Within each cluster, the genetic divergence between P. carinii organisms varied in terms of the phylogenetic divergence existing among the corresponding host species. However, the relative position of P. carinii groups (rodent, carnivore or primate-derived P. carinii) could not be clearly determined. Further resolution will require the integration of additional sequence data.     

Phylogenetic Relationships of the Order Insectivora Based on Complete 12S rRNA Sequences from Mitochondria

Despite numerous studies, there is no single accepted hypothesis of eutherian ordinal relationships. Among the least understood mammalian orders is the group Insectivora. Currently, molecular and morphological data are in conflict over the possible monophyly of the living members of Insectivora (lipotyphlans), and the relationships within the group remain largely unresolved. One of the primary criticisms concerning molecular analyses is the noticeable lack of data from a well-sampled group of lipotyphlan insectivores. The mitochondrial 12S rRNA gene has been widely used to resolve interordinal and intraordinal relationships across a variety of mammalian taxa. This study compares 118 complete mammalian 12S rRNA sequences, representing all of the 18 eutherian orders and 3 metatherian orders, and includes as well taxa from each of the six families of lipotyphlan insectivores. Insectivoran lineages are thought to have diverged concurrently with the general radiation of mammalian orders. This study suggests that the 12S rRNA sequences lack the ability to resolve relationships extending into this period. This would explain the polyphyly, unusual affinities, and low support derived in this and other studies employing 12S rRNA sequences to diagnose relationships among eutherian orders. The results of these analyses suggest that even extensive taxon sampling is insufficient to provide well supported groups among eutherian orders. Additional genes and species sampling will be necessary to elucidate whether the Insectivora form a monophyletic group.     

Acquisition of social behavior in mammalian lineages is related with duplication events of FPR genes

Formyl peptide receptors (FPRs) were firstly detected in immune cells where they act as key mediators of leukocyte chemotaxis, promoting the host defense against pathogens. Recently, three paralogs were reported in Homo sapiens (FPR1–3) and seven paralogs in Mus musculus (FPR1, FPRrs1–4, FPRrs6 and FPRrs7), but information from other mammalian lineages is scarce, including ambiguities in the current nomenclature system (e.g. absence of an orthologous relation between human and mouse FPR3). Here, we explored the FPR gene repertoire across 175 mammalian genomes using integrative phylogenetic and synteny analyses to describe the evolutionary history of FPRs in all mammalian orders. FPRs present a well conserved synteny but showed dynamic episodes of duplication events specific to several mammalian orders (Chiroptera, Perissodactyla, Primates and Rodentia), with up to 11 paralogs in some cases. Despite FPRs could be expressed in a panoply of tissues, there is a suggestion that they maintain an exclusive immunological function. However, we observed that species with social behavior have higher repertoire of FPRs in contrast with species with solitary lifestyle. Such evidence suggests a strict relationship between the optimization of the immunological system (by FPR duplication patterns) and the mammalian social behavior.     

中国及其邻近地区兽类分布的趋势

本文应用Terent'ev(1963)始创的方格法对我国及其邻近地区的兽类(除冀手目外)进行了统计,揭示和初步阐述了兽类及其各目中:(一)种的分化中心和密度分布趋势;(二)种的密度分布与纬度及三大自然区主要自然因素的关系。最后,以Schilder(1956)的方法编制了中国与邻近地区兽类区系种的相似性及其数量关系图,提出若干值得进一步探讨的分布现象。     

Chromosome painting of the pygmy tree shrew shows that no derived cytogenetic traits link primates and scandentia

We hybridized human chromosome paints on metaphases of the pygmy tree shrew (Tupaia minor, Scandentia). The lack of the ancestral mammalian 4/8 association in both Primates and Scandentia was long considered a cytogenetic landmark that phylogenetically linked these mammalian orders. However, our results show that the association 4/8 is present in Tupaia along with not previously reported associations for 1/18 and 7/10. Altogether there are 11 syntenic associations of human chromosome segments in the pygmy tree shrew karyotype: 1/18, 2/21, 3/21, 4/8, 7/10, 7/16, 11/20, 12/22 (twice), 14/15 and 16/19. Our data remove any cytogenetic evidence that Scandentia has a preferential phylogenetic relationship with Primates.     

Subsistence hunting and bushmeat exploitation in central-western Tanzania

An ethnozoological research was carried out in the Tabora District (central-western Tanzania) from December '95 to February '96, to gather information on the sustainable exploitation of wildlife there and to outline the zoological culture of the native people (the Banyamwezi). The objective was to describe the hunting activity and the techniques employed in capturing wild mammals and to gather quantitative data on game harvest. An inventory of the mammal species living in the study area was conducted by three different methods: (1) direct field observation of animals and their tracks; (2) identification of animals captured by the villagers; (3) interviews with the hunters. The activities of 10 local hunters from seven villages were followed during a nine week period. The number of mammals killed and the techniques used for each species were recorded. Other data were collected through interviews of the villagers and concerned (1) the use of every species as food or for other purposes; (2) the species considered as pests; (3) the best places and time for hunting the different species; (4) the time spent hunting them; (5) the food restrictions and taboos; (6) the extent of the bushmeat market (quantity, price, etc.). A total of 236 animals belonging to 37 species were killed during the study period with the following breakdown into taxonomic groups: Bovidae (44.06%), Carnivora (22.88%), Lagomorpha (8.05%), Rodentia (7.2%), diurnal Primates (5.93%), Insectivora (4.23%), Hyracoidea (0.84%), nocturnal Primates (0.84%), Hippopotamidae (0.42%) and Pholidota (0.42%). Four different techniques were used by local hunters in the study area: guns (53.81%), traps (19.06%), spears (11.01%) and dogs (16.01%). Poaching is rampant because of the scarcity of ranger staff and vehicles for patrolling.     

Characterization and phylogenetic utility of the mammalian protamine p1 gene

We sequenced the protamine P1 gene (ca. 450 bp) from 20 bats (order Chiroptera) and the flying lemur (order Dermoptera). We compared these sequences with published sequences from 19 other mammals representing seven orders (Artiodactyla, Carnivora, Cetacea, Perissodactyla, Primates, Proboscidea, and Rodentia) to assess structure, base compositional bias, and phylogenetic utility. Approximately 80% of second codon positions were guanine, resulting in protamine proteins containing a high frequency of arginine residues. Our data indicate that codon usage for arginine differs among higher mammalian taxa. Parsimony analysis of 40 species representing nine orders produced a well-resolved tree in which most nodes were supported strongly, except at the lowest taxonomic levels (e.g., within Artiodactyla and Vespertilionidae). These data support monophyly of several taxa proposed by morphologic and molecular studies (all nine orders: Laurasiatheria, Cetartiodactytla, Yangochiroptera, Noctilionoidea, Rhinolophoidea, Vespertilionoidea, Phyllostomidae, Natalidae, and Vespertilionidae) and, in agreement with recent molecular studies, reject monophyly of Archonta, Volitantia, and Microchiroptera. Bats were sister to a clade containing Perissodactyla, Carnivora, and Cetartiodactyla, and, although not unequivocally, rhinolophoid bats (traditional microchiropterans) were sister to megachiropterans. Sequences of the protamine P1 gene are useful for resolving relationships at and above the familial level in bats, and generally within and among mammalian orders, but with some drawbacks. The coding and intervening sequences are small, producing few phylogenetically informative characters, and aligning the intron is difficult, even among closely related families. Given these caveats, the protamine P1 gene may be important to future systematic studies because its functional and evolutionary constraints differ from other genes currently used in systematic studies.     

Synaptonemal complex analysis of spermatocytes of Talpa occidentalis (Insectivora, Mammalia): autosomal synapsis and substaging of zygonema and pachynema

Spermatocytes from the mole, Talpa occidentalis, a species that includes both XX males and intersexes, were surface-spread and silver-stained to substage meiotic prophase from early zygonema through pachynema. In zygonema, only the Z2 and Z3 substages were found. This stage differed in comparison with such species as the Chinese hamster, laboratory mouse, and deer mouse, which belong to orders other than Insectivora. Pachynema, in which five substages were established (P1-P5), seems to be a more homogeneous stage, and remarkable differences with respect to the above-mentioned species were not found. Synaptic adjustment was demonstrated in X-Y pairing. Nonhomologous pairing was evident at the Y-centromeric region and considered likely in the proximal arm of this chromosome. In addition to sequencing the events taking place during zygonema and pachynema in males from a wild population in which some members show sex reversal, our finding represents the first attempt to substage zygonema and pachynema in an Insectivore species, thus contributing to current knowledge of the nature and degree of variability in the mammalian synaptic process.     

Additional support for Afrotheria and Paenungulata,the performance of mitochondrial versus nuclear genes,and the impact of data partitions with heterogeneous base composition

We concatenated sequences for four mitochondrial genes (12S rRNA, tRNA valine, 16S rRNA, cytochrome b) and four nuclear genes [aquaporin, alpha 2B adrenergic receptor (A2AB), interphotoreceptor retinoid-binding protein (IRBP), von Willebrand factor (vWF)] into a multigene data set representing 11 eutherian orders (Artiodactyla, Hyracoidea, Insectivora, Lagomorpha, Macroscelidea, Perissodactyla, Primates, Proboscidea, Rodentia, Sirenia, Tubulidentata). Within this data set, we recognized nine mitochondrial partitions (both stems and loops, for each of 12S rRNA, tRNA valine, and 16S rRNA; and first, second, and third codon positions of cytochrome b) and 12 nuclear partitions (first, second, and third codon positions, respectively, of each of the four nuclear genes). Four of the 21 partitions (third positions of cytochrome b, A2AB, IRBP, and vWF) showed significant heterogeneity in base composition across taxa. Phylogenetic analyses (parsimony, minimum evolution, maximum likelihood) based on sequences for all 21 partitions provide 99-100% bootstrap support for Afrotheria and Paenungulata. With the elimination of the four partitions exhibiting heterogeneity in base composition, there is also high bootstrap support (89-100%) for cow + horse. Statistical tests reject Altungulata, Anagalida, and Ungulata. Data set heterogeneity between mitochondrial and nuclear genes is most evident when all partitions are included in the phylogenetic analyses. Mitochondrial-gene trees associate cow with horse, whereas nuclear-gene trees associate cow with hedgehog and these two with horse. However, after eliminating third positions of A2AB, IRBP, and vWF, nuclear data agree with mitochondrial data in supporting cow + horse. Nuclear genes provide stronger support for both Afrotheria and Paenungulata. Removal of third positions of cytochrome b results in improved performance for the mitochondrial genes in recovering these clades.