Population genetic study in ten endogamous groups of West Bengal, India

Ten endogamous population groups of West Bengal (India)--Rabhas, Garos, Mechs, Rajbanshis, Jalia Kaibartas, Bagdis, Lodhas, Mundas, Brahmins, Vaidyas--have been typed for twelve polymorphic systems: ABO, Gm, Km, Hp, Cp, Tf, Alb, Hb, aP, EsD, AK and PGM1. The results are compared with those obtained on other Indian populations. Serological and anthropometric data, which have been included into population comparisons, reveal a considerable genetic variability of the groups under study. This variability is obviously connected with the population history of West Bengal.     

Discriminant analysis by anthropometric measures in elderly Bengalee Hindus of Calcutta, India

Although a sizeable proportion of India's population is elderly (55 years and above), virtually no information exists on how well anthropometric measures could be utilized to correct age group size in elderly individuals. The present investigation was aimed to study how good anthropometric measures could be manoeuvre for corrected group size in the elderly Bengalee Hindu population of Calcutta, India. A cross-sectional study was undertaken among 410 elderly (55 years and above) Bengalee Hindu individuals (men = 210, women = 200) utilizing various anthropometric measures, namely height, weight, body mass index (BMI), mid upper arm circumference (MUAC) and triceps skinfold. A discriminant analysis was then undertaken separately for men and women using the above mentioned anthropometric measures. The results revealed that overall 77.1% for men and 78.6% for women of all cases were correctly classified. No individuals were misclassified in the predicted groups III and I for both the sexes. The most discriminating variable for the groups was triceps skinfold in both sexes. These results provided evidence that the anthropometric characteristics of group III and I were very different from each other with those belonging to group II having intermediate characteristics.     

Biological Affinities Between Migrant and Parental Populations in Punjab, India

In the present study, we have examined biological affinities between parental population, migrants from Pakistan after 1947 and non-Punjabi migrants from other states of India in Punjab. About 500 adult individuals of both sexes from 300 families among three groups were measured for 16 anthropometric and physiometric variables. Analysis of both univariate and multivariate suggests an overall significant migration effect in almost all variables especially anthropometric measurements between both sexes. The higher discrimination has been found in migrants from other states of India with reference to anthropometric traits as compared to other two populations. This is because of more genetic heterogeneity as would be expected from many states and many ethnicities of migrants. It was also found that the other two populations are more or less qualitatively similar, which reflects common ethnohistorical or geographic affiliations. However, overall, women showed a greater migration effect than men.     

Status of Austro-Asiatic groups in the peopling of India: An exploratory study based on the available prehistoric,linguistic and biological evidences

Among the most contentious currently debated issues is about the people who had settled first in the Indian subcontinent. It has been suggested that the communities affiliated to the Austro-Asiatic linguistic family are perhaps the first to settle in India and the palaeoanthropological evidences suggest the earliest settlement probably around 60,000 years BP. Recent speculations, based on both traditional genetic markers and DNA markers, seem to corroborate the aforesaid view. However, these studies are inadequate both in terms of the representation of the constituent groups within this broad linguistic category as well as the number of samples that represent each of them. We strongly feel that, before making any formidable conclusions on the peopling of India and/or the history of settlement, it is necessary to ascertain that the Austro-Asiatic speakers, represented by over 30 different tribal groups, either genetically constitute a homogenous single entity or are a heterogeneous conglomeration, derived from different sources. As a first step towards this we tried to collate and analyse the existing information — geographic, ethno-historic, cultural and biological. The results of the analyses of anthropometric and genetic marker data indicate that the Austro-Asiatic groups, particularly the Mundari speakers, with certain exceptions, show greater homogeneity among them when compared to the other linguistic groups, although certain groups show as outliers. However, traditional genetic markers show lower within population heterozygosity compared to Dravidian and other Indian populations. This is contrary to what has been claimed in case of certain DNA markers. Given that relatively greater heterozygosity among the Austro-Asiatic populations has been taken as one of the important evidences supporting greater antiquity of these populations one should await results of detailed DNA studies being currently undertaken by us, involving a number of Austro-Asiatic and other ethnic populations of India to resolve the issue unequivocally.     

Genetic analysis of Indian HIV-1 nef: subtyping, variability and implications

HIV-1 subtype C is predominant in India and globally. In the present study, we analyze HIV-1 subtype C regulatory protein Nef sequences from five recent Indian seroconverters and five long-term survivors (LTSs) for variability at crucial functional domains. Sequence analysis suggested the possibility of using regulatory gene sequences for viral subtyping and evolutionary studies apart from structural genes. In the phylogenetic tree, Indian nef sequences segregated away from other reported subtype C sequences, forming an Indian subclade within subtype C. Our studies also suggested no evidence for the association of truncated Nef with slow progression of disease, as all LTSs had intact Nef. We could identify some variations in juxtapositions to crucial functional domains, especially in seroconverter sequences, when comparing them with others. In phylogenetic analysis, specifically for the base-pair regions 411-428 and 478-525, our seroconverter sequences segregated away from those reported earlier in the literature, indicating specific evolutionary changes in these conserved regions of nef in currently circulating viruses. But the dN/dS ratio for our samples was less than one on comparing them with reported subtype C and representative sequences of different clades, strongly emphasizing the necessity of sequence conservation at different disease stages and even across clades. HLA-I binding epitope predictions for common Indian HLAs indicated that specific mutations in seroconverter Nef may alter the intensity of epitope binding, which may alter the outcome of the immune response. Hence these data would be useful in designing Nef epitopes to be included in multi-epitope HIV-1 vaccine for the Indian population and would also be of immense help in HIV-1 evolutionary studies.     

Life cycle assessment of chitosan production in India and Europe

Purpose

The aim of this article is to present the first life cycle assessment of chitosan production based on data from two real producers located in India and Europe. The goal of the life cycle assessment (LCA) was to understand the main hot spots in the two supply chains, which are substantially different in terms of raw materials and production locations.

Methods

The LCA is based on consequential modelling principles, whereby allocation is avoided by means of substitution, and market mixes include only flexible, i.e. non-constrained suppliers. The product system is cradle to gate and includes the production of raw materials, namely waste shells from snow crab and shrimp in Canada and India, respectively, the processing of these in China and India and the manufacture of chitosan in Europe and India. Primary data for chitin and chitosan production were obtained from the actual producers, whereas raw material acquisition as well as waste management activities were based on literature sources. The effects of indirect land use change (iLUC) were also included. Impact assessment was carried out at midpoint level by means of the recommended methods in the International Life Cycle Data (ILCD) handbook.

Results and discussion

In the Indian supply chain, the production of chemicals (HCl and NaOH) appears as an important hot spot. The use of shrimp shells as raw material affects the market for animal feed, resulting in a credit in many impact indicators, especially in water use. The use of protein waste as fertilizer is also an important source of greenhouse-gas and ammonia emissions. In the European supply chain, energy use is the key driver for environmental impacts, namely heat production based on coal in China and electricity production in China and Europe. The use of crab shells as raw material avoids the composting process they would be otherwise subject to, leading to a saving in composting emissions, especially ammonia. In the Indian supply chain, the effect of iLUC is relevant, whereas in the European one, it is negligible.

Conclusions

Even though we assessed two products from the same family, the results show that they have very different environmental profiles, reflecting their substantially different supply chains in terms of raw material (shrimp shells vs. crab shells), production locations (locally produced vs. a global supply chain involving three continents) and the different applications (general-purpose chitosan vs. chitosan for the medical sector).

     

Phylogeography and origin of Indian domestic goats

The Indian subcontinent contains 20 well-characterized goat breeds, which vary in their genetic potential for the production of milk, meat, and fibre; disease resistance; heat tolerance; and fecundity. Indian goats make up 20% of the world's goat population, but there has been no extensive study of these economically important animals. Therefore, we have undertaken the present investigation of 363 goats belonging to 10 different breeds from different geographic regions of India using mtDNA sequence data from the HVRI region. We find evidence for population structure and novel lineages in Indian goats and cannot reconcile the genetic diversity found within the major lineage with domestication starting 10,000 years ago from a single mtDNA ancestor. Thus, we propose a more complex origin for domestic goats.     

People of India: Biological diversity and affinities

The Indian subcontinent comprises a vast collection of peoples with different morphological, genetic, cultural, and linguistic characteristics. While much of this variability is indigenous, a considerable fraction of it has been introduced through large-scale immigrations into India in historical times. From an evolutionary standpoint, it is of immense interest to quantify biological diversity in contemporary human populations, to study biological affinities and to relate observed patterns of affinities with cultural, linguistic and demographic histories of populations. Such efforts are intended to shed light on the peopling of India. The purpose of this paper is to present a broad overview of the physical (anthropometric) and genetic diversities and affinities of the peoples of India. I shall also attempt to examine how well biological, particularly genetic, diversities and affinities correlate with geographical, socio-cultural, and linguistic diversities and affinities. © 1998 Wiley-Liss, Inc.     

Growth pattern of the Kamars--a primitive tribe of Chhattisgarh,India

A cross sectional study of the physical growth status was made on 655 Kamar children (341 boys and 314 girls), aged 5 to 18 years, in the Raipur district of Chhattisgarh. The study aimed to find out the growth pattern of the Kamar children, which is considered to be a primitive tribe of Chhattisgarh, India and was compared with another Indian tribe and the official data for all India (ICMR). Anthropometric measurements included height, weight, sitting height, biacromial diameter, biilliocrystal diameter, upper arm circumference, calf circumference and measurements of the triceps and subscapular skinfolds. All anthropometric measurements except skinfold thickness exhibit uniform increase with age in both sexes. However, when height and weight of the Kamar boys and girls were compared with the data for other tribes and for all India, the Kamar children (both boys and girls) indicated lower weight and height and the difference showed to be significant, for almost all ages. Kamar boys showed higher anthropometric values than girls in almost all measurements except in biilliocrystal diameter and in measured skinfolds. Poor socio-economic status of this primitive tribe may be one of the reasons for this poor growth pattern. However, in-depth study is necessary in order to arrive at any basic conclusions and to recommend any policy and interventions.     

Variation in anthropometric characters and their relationship with climatic factors: a study on the peoples of Arunachal Pradesh, India

In the present study an attempt has been made to examine the anthropometric variation and the relationship of anthropometric variables with climatic factors among the peoples of Arunachal Pradesh, India. The distance analysis does not seem to provide any interesting corroboration between anthropometric data and the intra- and intergroup relationship. A similar trend has also been noticed while analysing the correlation coefficient between two indices (i.e. the cephalic and total facial index). The present study suggests that the climatic factors are playing an important role in regulating the variation of anthropometric characters among the different population groups of Arunachal Pradesh.     

Inferring the evolutionary history of Indian Plasmodium vivax from population genetic analyses of multilocus nuclear DNA fragments

The human malaria parasite Plasmodium vivax is globally widespread, causing high malaria morbidity. As P. vivax is highly endemic to India, and previous reports indicate genetic homogeneity in population samples, we tested the hypothesis of no genetic structuring in Indian P. vivax. Further, based on the reports of increasing incidence of Plasmodium falciparum infection in comparison with P. vivax in recent years in India, it was important to understand whether reduction in population size has resulted in decrease in P. vivax infection rate in India. For this, we utilized recently developed putatively neutral markers from chromosome 13 of P. vivax to score single nucleotide polymorphisms in 126 P. vivax isolates collected from 10 different places in India. The overall results indicated that Indian P. vivax bears high nucleotide diversity within population samples but moderate amount of genetic differentiation between population samples. STRUCTURE analysis grouped 10 population samples into three clusters based on the proportion of the genetic ancestries in each population. However, the pattern of clustering does not correlate with sampling locations in India. Furthermore, analyses of past demographic events indicated reduction in population size in majority of population samples, but when isolates from all the 10 samples were considered as a single population, the data fit to the demographic equilibrium model. All these observations clearly indicate that Indian P. vivax presents complex evolutionary history but possesses several features of being a part of ancestral distribution range of this species.     

Morphological and regional variations in body dimensions of the Gujjars of different localities in north-western India

Physical features and somatometric characters of the wide spread Gujjar population in North-Western India are fascinating. It is all the more interesting to study their morphological and regional variations in the body dimensions. In this paper, anthropometric characters of 200 adult subjects each belonging to Hindu Gujjars in the Ropar District of Punjab and Muslim Gujjars in the Chamba District of Himachal Pradesh in the North-Western part of India were compared. They differ significantly from each other for many physiognomic measurements, suggesting the biological diversity between the two population groups. Further, the comparison of anthropometric measurements between the different localities of the Gujjars showed morphological variations and regional diversity of the isolates in North-Western India. These findings may be attributed to the founder effect, genetic drift, and breeding and geographical isolation of the populations under study and not to secular trends. The findings have also been compared and discussed with the available results of other local populations in North-Western India.     

Austro-Asiatic tribes of Northeast India provide hitherto missing genetic link between South and Southeast Asia

Northeast India, the only region which currently forms a land bridge between the Indian subcontinent and Southeast Asia, has been proposed as an important corridor for the initial peopling of East Asia. Given that the Austro-Asiatic linguistic family is considered to be the oldest and spoken by certain tribes in India, Northeast India and entire Southeast Asia, we expect that populations of this family from Northeast India should provide the signatures of genetic link between Indian and Southeast Asian populations. In order to test this hypothesis, we analyzed mtDNA and Y-Chromosome SNP and STR data of the eight groups of the Austro-Asiatic Khasi from Northeast India and the neighboring Garo and compared with that of other relevant Asian populations. The results suggest that the Austro-Asiatic Khasi tribes of Northeast India represent a genetic continuity between the populations of South and Southeast Asia, thereby advocating that northeast India could have been a major corridor for the movement of populations from India to East/Southeast Asia.     

Founder effects explain the distribution of the HLAA1-B17 but not the absence of theA1-B8 haplotypes in India

The HLA system may play an important role in natural selection processes through its involvement in immune response and because of the HLA association of some diseases. Linkage disequilibrium in the HLA system poses many interesting questions. India. a melting pot of races and cultures in sympatric isolation, provides an ideal opportunity to study these aspects. Linkage disequilibrium and haplotype data are valuable in the comparison of various populations. An analysis of the available HLA A-B haplotype data for the Indian population documents the heterogeneous nature of the latter: each endogamous caste group, major group or even regional group has its characteristic haplotype profile. The haplotypeA1-B17 is present in most Indian populations butA10-B8 occurs mostly in North India: this may be a consequence of founder effects. The haplotypeAl-B8 a typical Caucasian haplotype, is absent in the Indian subcontinent: this may be due to the selective disadvantageA1-B8 confers in the Indian environment. The different regional and caste groups of India possessing diverse haplolype combinations provide an ideal opportunity to evaluate the selective values of these haplotypes and to study human immunogenetics.     

Body dimensions of Indian housewives

Anthropometric dimensions of Indian housewives have been measured from the viewpoint of architectural and product design ergonomics. Altogether, 79 different body dimensions were measured on 147 urban housewives of age range varying between 21 to 56 years. The average stature and weight of Indian housewives as observed in this study were 153.2 cm (SD +/- 5.7) and 55.1 kg (SD +/- 9.7), respectively. Average values along with 5th and 95th percentile values for all measurements have been determined. Values were compared with other Indian studies. A correlation between the body height, weight, and other measurements were obtained with the help of a PDP 11/23 microcomputer. Based on the existing data ratio scale relationships between the body height and other measurements of Indian women were determined. An anthropometric data, pack is presently lacking; therefore, the findings herein can be used while determining household workplace layouts, evaluating area specifications, determining work-surface heights, clearances, reach, etc. A similar study on a larger population size for Indian women has been suggested for establishing national standards.     

Height and cognitive achievement among Indian children

Taller children perform better on average on tests of cognitive achievement, in part because of differences in early-life health and net nutrition. Recent research documenting this height-achievement slope has primarily focused on rich countries. Using the India Human Development Survey, a representative sample of 40,000 households which matches anthropometric data to learning tests, this paper documents a height-achievement slope among Indian children. The height-achievement slope in India is more than twice as steep as in the U.S. An earlier survey interviewed some IHDS children's households eleven years before. Including matched early-life control variables reduces the apparent effect of height, but does not eliminate it; water, sanitation, and hygiene may be particularly important for children's outcomes. Being one standard deviation taller is associated with being 5 percentage points more likely to be able to write, a slope that falls only to 3.4 percentage points controlling for a long list of contemporary and early-life conditions.     

Phylogeography of olive ridley turtles (Lepidochelys olivacea) on the east coast of India: implications for conservation theory

Orissa, on the east coast of India, is one of the three mass nesting sites in the world for olive ridley turtles (Lepidochelys olivacea). This population is currently under threat as a result of fishery-related mortality; more than 100 000 olive ridleys have been counted dead in the last 10 years in Orissa. In general, the globally distributed olive ridley turtle has received significantly less conservation attention than its congener, the Kemp's ridley turtle (L. kempi), because the latter is recognized as a distinct species consisting of a single endangered population. Our study of mitochondrial DNA haplotypes suggests that the ridley population on the east coast of India is panmictic, but distinct from all other populations including Sri Lanka. About 96% of the Indian population consisted of a distinct 'K' clade with haplotypes not found in any other population. Nested clade analysis and conventional analysis both supported range expansions and/or long-distance colonization from the Indian Ocean clades to other oceanic basins, which suggested that these are the ancestral source for contemporary global populations of olive ridley turtles. These data support the distinctiveness of the Indian Ocean ridleys, suggesting that conservation prioritization should be based on appropriate data and not solely on species designations.     

Integrating Linguistics,Social Structure,and Geography to Model Genetic Diversity within India

India represents an intricate tapestry of population substructure shaped by geography, language, culture, and social stratification. Although geography closely correlates with genetic structure in other parts of the world, the strict endogamy imposed by the Indian caste system and the large number of spoken languages add further levels of complexity to understand Indian population structure. To date, no study has attempted to model and evaluate how these factors have interacted to shape the patterns of genetic diversity within India. We merged all publicly available data from the Indian subcontinent into a data set of 891 individuals from 90 well-defined groups. Bringing together geography, genetics, and demographic factors, we developed Correlation Optimization of Genetics and Geodemographics to build a model that explains the observed population genetic substructure. We show that shared language along with social structure have been the most powerful forces in creating paths of gene flow in the subcontinent. Furthermore, we discover the ethnic groups that best capture the diverse genetic substructure using a ridge leverage score statistic. Integrating data from India with a data set of additional 1,323 individuals from 50 Eurasian populations, we find that Indo-European and Dravidian speakers of India show shared genetic drift with Europeans, whereas the Tibeto-Burman speaking tribal groups have maximum shared genetic drift with East Asians.     

Evaluating the potential for reintroducing the endangered wild water buffalo (Bubalus arnee) in Kanha National Park,central India

Reintroducing megafauna to their historic range is an effective strategy to halt their extinctions and restore ecosystems. Wild water buffalo (Bubalus arnee) is an endangered megaherbivore that is lost from 95% of its range. About 90% of its global population (less than 4000) resides within India, in two isolated populations: northeast and central India. The central Indian population is on the verge of extinction and warrants urgent conservation interventions. We assess the potential and provide a strategy for reintroducing buffaloes in Kanha National Park, India. Habitat suitability using the global occurrence of buffalo revealed low-lying grasslands with least human pressure found in Kanha (390 km²) to be suitable. Within this suitable range, we evaluated vegetation composition, forage biomass, and potential carrying capacity. Multidimensional ordination classified these suitable sites into moist and dry grassland clusters. Moist grasslands were found to better suit reintroduction due to lower grazing pressure, higher productivity, and availability of perennial water sources. Distinct matriarchal clades of swamp and river buffalo were observed. Within the river buffalo clade, Indian wild buffaloes formed a distinct cluster with close proximity between northeast and central Indian samples, suggesting northeast buffaloes could be sourced for a founding population in Kanha. Following IUCN guidelines, we discuss the reintroduction strategy that could sustain approximately 200 buffaloes in the area and subsequently expand to other suitable habitats in central India. If implemented as proposed, recovery of this lost ecosystem engineer will help to restore grasslands, and swamp habitats, as well as contribute to its global conservation efforts.