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1.
Melanin represents a major problem for the study of melanoma by microarrays since it is retained during RNA extraction and inhibits the enzymatic reactions used for probe preparation. Here we report a new method for cleaning RNA from melanin, based on the use of the cationic detergent cetyl‐trimethylammonium bromide (CTAB)–urea for RNA precipitation. This method is easy to perform and has a low cost. Purified RNA is recovered with high quality and good yield. CTAB–urea treated RNA from highly pigmented melanoma cells can be successfully reverse transcribed and labeled to obtain probes which can be subsequently used in cDNA microarray experiments, giving consistent and reproducible results.  相似文献   

2.
A method is described for measuring the porportion of a specific messenger RNA in the total RNA extracted from pulse-labelled cells. A model system consisting of total ribosomal RNA and Escherichia coli DNA is used to validate the method and to define the conditions under which it can be used.  相似文献   

3.
RNA extraction from polysaccharide-based cell-laden hydrogel scaffolds   总被引:2,自引:0,他引:2  
An effective method for obtaining high-quality RNA from polysaccharide-rich hydrogels would be of great interest to biomaterialists and tissue engineers. Based on the similarities between polysaccharide-based hydrogels and plant tissues, we used a plant-specific RNA extraction kit to extract RNA from mammalian cells encapsulated in hydrogel scaffolds. The results indicate that this method can be reliably used in isolating high-purity RNA from polysaccharide hydrogels.  相似文献   

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一种用矽石快速提取总RNA的方法   总被引:7,自引:0,他引:7  
根据矽石能与核酸结合的特性,建立了用矽石提取细胞和组织总RNA的方法,方法简便、快速,所得RNA适用于各种研究。  相似文献   

6.
RNASwift is an inexpensive, versatile method for the rapid extraction of RNA. Existing RNA extraction methods typically use hazardous chemicals including phenol, chloroform and formamide which are often difficult to completely remove from the extracted RNA. RNASwift uses sodium chloride and sodium dodecyl sulphate to lyse the cells and isolate the RNA from the abundant cellular components in conjunction with solid phase extraction or isopropanol precipitation to rapidly purify the RNA. Moreover, the purified RNA is directly compatible with downstream analysis. Using spectrophotometry in conjunction with ion pair reverse phase chromatography to analyse the extracted RNA, we show that RNASwift extracts and purifies RNA of higher quality and purity in comparison to alternative RNA extraction methods. The RNASwift method yields approximately 25 μg of RNA from only 108Escherichia coli cells. Furthermore, RNASwift is versatile; the same simple reagents can be used to rapidly extract RNA from a variety of different cells including bacterial, yeast and mammalian cells. In addition to the extraction of total RNA, the RNASwift method can also be used to extract double stranded RNA from genetically modified E. coli in higher yields compared to alternative methods.  相似文献   

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A versatile procedure is described for the analysis of RNA and DNA in brain using cetyltrimethylammonium bromide as the initial precipitant. Optimal conditions are described for the precipitation, hydrolysis, and effective separation of the RNA and DNA fractions from contaminating protein. The RNA and DNA fraction can now be accurately estimated by uv absorbance without a two wavelength correction. This method has also been used for the analysis of other mammalian organs and for mammalian cells obtained from tissue culture. The method may also be used for the simultaneous determination of radioactivity in nucleic acids. The orcinol reaction is shown to give high values for brain RNA.  相似文献   

9.
A reliable external control for ribonuclease protection assays.   总被引:1,自引:0,他引:1       下载免费PDF全文
A method is described for generating an external spiked human RNA control to enhance the reliability of assessment of gene expression in tumour extracts. Spiking with an external standard RNA controls for all subsequent steps of analysis on a lane by lane basis and allows for uniform comparison of the gene of interest as a fraction of total RNA, particularly when multiple samples are not available. The antisense probe that is being used to detect endogenous gene expression is also used as an external control. A sense riboprobe is made from the same vector. Because of the flanking RNA polymerase sites incorporated in both probes, hybridization with the sense riboprobe at a much lower concentration than the antisense probe generates a larger product that can be readily separated from the endogenous protected fragment. This method is generally applicable to any riboprobe that has a T3 and T7 RNA polymerase site and allows any externally added riboprobe use for assessing endogenous gene expression to be used as the external spike control.  相似文献   

10.
一种从富含多糖的玉米幼穗中提取RNA的方法   总被引:2,自引:0,他引:2  
介绍了一种大量提取玉米(Zea mays L.)幼穗总RNA的有效方法。由于玉米幼穗富含多糖, 用普通的RNA提取方法和Trizol很难获得高质量的RNA。在热酚法提取RNA的基础上, 通过在提取缓冲液中加入低pH值的醋酸钾来去除多糖。所得到 的RNA获得率高, 质量好, 条带完整, 实验证明可直接用于RT-PCR、微阵列等各项后续分子生物学实验。  相似文献   

11.
一种从富含多糖的玉米幼穗中提取RNA的方法   总被引:6,自引:0,他引:6  
介绍了一种大量提取玉米(Zeamays L.)幼穗总RNA的有效方法。由于玉米幼穗富含多糖,用普通的RNA提取方法和Trizol很难获得高质量的RNA。在热酚法提取RNA的基础上,通过在提取缓冲液中加入低pH值的醋酸钾来去除多糖。所得到的RNA获得率高,质量好,条带完整,实验证明可直接用于RT-PCR、微阵列等各项后续分子生物学实验。  相似文献   

12.
马铃薯卷叶病毒( Potato leafroll virus,PLRV)对马铃薯生产的危害极大,是一种极为重要的马铃薯病毒病。 RT-PCR是马铃薯卷叶病毒检测较为常用的方法,该方法检测准确率高、成本低、适用范围广。但在实际生产中其检测对象多为染病植株,对PLRV传播的主要介体桃蚜( Myzus persicae)的检测,则由于蚜虫体积小、RNA提取难度大、成本高、且不能复检,因而在生产中不能被广泛使用。该研究以马铃薯感病植株和带毒蚜虫为材料,利用改进的RNA提取方法从它们中提取到PLRV的RNA,并以CP 基因设计特异性引物,进行PCR检测。结果表明:该方法提取的RNA完整性好,可用于蚜虫中PLRV检测,且同样适用于对马铃薯感病植株的检测。另外,通过对田间有翅蚜和无翅蚜携带 PLRV 情况进行检测发现,无翅蚜 PLRV 检出率为100%,有翅蚜PLRV检出率也高达60%,证明该体系在生产中的实用性。该研究使用改进的RNA提取方法,提取蚜虫中RNA,并利用RT-PCR进行了PLRV检测,与以前的方法相比简单实用,可被应用于生产检测中。该研究结果为马铃薯生产中PLRV的防控提供了一种新的手段。  相似文献   

13.
Hydroxyl radical footprinting is a widely used method for following the folding of RNA molecules in solution. This method has the unique ability to provide experimental information on the solvent accessibility of each nucleotide in an RNA molecule, so that the folding of all domains of the RNA species can be followed simultaneously at single-nucleotide resolution. In recent work, hydroxyl radical footprinting has been used, often in combination with other global measures of structure, to work out detailed folding pathways and three-dimensional structures for increasingly large and complicated RNA molecules. These include synthetic ribozymes, and group I and group II ribozymes, from yeast, the Azoarcus cyanobacterium and Tetrahymena thermophila. Advances have been made in methods for analysis of hydroxyl radical data, so that the large datasets that result from kinetic folding experiments can be analyzed in a semi-automated and quantitative manner.  相似文献   

14.
Isolating RNA from dry conifer seeds can be difficult because of a number of interfering compounds present in seeds. We describe a protocol for total RNA isolation from black spruce dry seeds, which is an adaptation of a method used for mouse myeloma tissues. The extraction relies on selective precipitation of RNA by using lithium chloride.  相似文献   

15.
Low molecular weight RNA (LMW RNA) is generally obtained either from the total RNA or from total nucleic acids solution. Many steps and chemical reagents are involved in traditional methods for LMW RNA isolation where degradation of LMW RNA often occurs, especially for plant materials with high levels of secondary catabolites. In this study, an efficient method was developed to directly isolate pure LMW RNA from pear peel, a material rich in polyphenolics that is covered with a layer of wax. The method was based on polyethylene glycol (PEG) precipitation combining CTAB buffer which is often used to isolate RNA from polysaccharide-rich and polyphenolics-rich materials. The entire procedure could be completed within 6 h and many samples could be processed at the same time. Few and common chemicals are used with this method. Hence, it could be used as an ordinary method in the laboratory. The developed method was further tested by isolating LMW RNA from Arabidopsis. Using the isolated LMW RNA samples, microRNAs were successfully detected and characterized.  相似文献   

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A method is presented for the isolation of low molecular weight nuclear (LMN) RNAs from small numbers of nuclei. Cetyltrimethylammonium bromide (CTAB) is used to precipitate small quantities of whole nuclear RNA from dilute aqueous solution following phenol-SDS extraction of purified nuclei. No carrier RNA is necessary during the precipitation step. LMN RNAs are separated from whole nuclear RNA by electrophoresis on polyacrylamide gels. No further purification of the RNA is necessary prior to electrophoresis. Both radioactivity and absorbance profiles of the LMN RNAs on the gels can be obtained. Thus, specific activities of labeled LMN RNA species can be estimated.  相似文献   

19.
Puskás LG  Zvara A  Hackler L  Micsik T  van Hummelen P 《BioTechniques》2002,33(4):898-900, 902, 904
In DNA microarray technology, repeatability and reliability are very important to compare multiple RNA samplesfrom different experiments. The application of common or universal RNA as a standard control equalizes the differences in hybridization parameters and array variations. For this purpose, high-quality reference RNA is necessary in bulk amounts. A novel approach was developed to get milligrams of sense or antisense RNA, starting from micrograms of pooled total RNA from different cell lines, tissues, or organisms. This method is inexpensive and allows further labeling procedures using poly(dT) or random oligomers as primers. In addition, amplified, sense reference RNA is suitable for standard labeling protocols, while the antisense reference RNA can be used with antisense RNA from the linear sample amplification method. Here we produced universal RNA for human, rat, and alfalfa and demonstrated the quality using specific cDNA microarrays.  相似文献   

20.
D A Hager  D J Jin  R R Burgess 《Biochemistry》1990,29(34):7890-7894
A method for the purification of highly pure and active Escherichia coli RNA polymerase holoenzyme is described. This method is simple, reproducible, and can be performed at room temperature. The procedure involves the high-performance liquid chromatography of a partially purified RNA polymerase sample on a Mono Q ion-exchange column. Under the conditions used, RNA polymerase holoenzyme is well separated from the core RNA polymerase and other impurities. The purified RNA polymerase contains virtually no impurities as judged by SDS-polyacrylamide gel electrophoresis. The purified RNA polymerase holoenzyme contains the sigma 70 subunit in stoichiometric amounts and is at least 90% active.  相似文献   

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