Simultaneous recovery of extracellular and intracellular DNA suitable for molecular studies from marine sediments

The occurrence of high extracellular DNA concentrations in aquatic sediments (concentrations that are 3 to 4 orders of magnitude greater than those in the water column) might play an important role in biogeochemical cycling, as well as in horizontal gene transfer through natural transformation. Since isolation of extracellular DNA from sediments is a difficult and unsolved task, in this study we developed an efficient procedure to recover simultaneously DNA associated with microbial cells and extracellular DNA from the same sediment sample. This procedure is specifically suitable for studying extracellular DNA because it avoids any contamination with DNA released by cell lysis during handling and extraction. Applying this procedure to different sediment types, we obtained extracellular DNA concentrations that were about 10 to 70 times higher than the intracellular DNA concentrations. Using specific targeted prokaryotic primers, we obtained evidence that extracellular DNA recovered from different sediments did not contain amplifiable 16S rRNA genes. By contrast, using DNA extracted from microbial cells as the template, we always amplified 16S rRNA genes. Although 16S rRNA genes were not detected in extracellular DNA, analyses of the sizes of extracellular DNA indicated the presence of high-molecular-weight fragments that might have contained other gene sequences. This protocol allows investigation of extracellular DNA and its possible participation in natural transformation processes.     

Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences

The extracellular DNA pool in marine sediments is the largest reservoir of DNA of the world oceans and it potentially represents an archive of genetic information and gene sequences involved in natural transformation processes. However, no information is at present available for the gene sequences contained in the extracellular DNA and for the factors that influence their preservation. In the present study, we investigated the depurination and degradation rates of extracellular DNA in a variety of marine sediment samples characterized by different ages (up to 10 000 years) and environmental conditions according to the presence, abundance and diversity of prokaryotic gene sequences. We provide evidence that depurination of extracellular DNA in these sediments depends upon the different environmental factors that act synergistically and proceeds at much slower rates than those theoretically predicted or estimated for terrestrial ecosystems. These findings suggest that depurination in marine sediments is not the main process that limits extracellular DNA survival. Conversely, DNase activities were high suggesting a more relevant role of biologically driven processes. Amplifiable prokaryotic 16S rDNA sequences were present in most benthic systems analysed, independent of depurination and degradation rates and of the ages of the sediment samples. Additional molecular analyses revealed that the extracellular DNA pool is characterized by relatively low-copy numbers of prokaryotic 16S rDNA sequences that are highly diversified. Overall, our results suggest that the extracellular DNA pool in marine sediments represents a repository of genetic information, which can be used for improving our understanding of the biodiversity, functioning and evolution of ecosystems over different timescales.     

Studying behavioural variation in salmonids from an ecological perspective: observations questions methodological considerations

Salmonid fish are an ecologically important and extensively studied group of fish which concern many interest groups in our society. The aim of this paper is to discuss and suggest solutions to the multifaceted problems associated with studying behavioural variation in salmonids, with focus on designing behavioural studies that are ecologically relevant. Many of the general problems and solutions discussed can be applied to other animals as well. First, the importance of asking clear questions when conceiving behavioural studies is addressed, using Tinbergen’s four questions and associated theories as stepping stones towards generating testable hypotheses about behavioural variation. We then address a range of methodological challenges encountered when attempting to study behavioural variation in salmonids and suggest solutions to overcome these problems. A range of approaches is discussed, from highly controllable laboratory experiments to monitoring studies of behaviour in the wild. The importance of combining lab- and field approaches to evaluate the ecological relevance of behavioural variation is highlighted. Finally, we suggest a general framework using a multi-faceted research approach to address questions about the behavioural ecology of salmonids (and other animals) so that knowledge can progress, and the ecological relevance of behavioural studies can be validated.     

Evidence for the biological turnover of thiols in anoxic marine sediments

The concentrations of methanethiol (MSH) and 3-mercaptopropionate (3-MPA) increased for a period of up to 24 h in fresh slurries of anoxic Biscayne Bay sediments. Other endogenous thiols such as glutathione (GSH) deceased immediately after slurry preparation or were not detectable at all. The maximum concentrations reached by 3-MPA and MSH were sometimes as high as 1 M, but were usually in the 100 to 300 nM range. After the initial increases, the concentrations of these thiols decreased rapidly to nearly constant levels of 20 nM for MSH and < 1nM for 3-MPA. In pre-incubated slurries, which had constant levels of thiols, the addition of microbial inhibitors including tungstate, molybdate, chloroform, and a mixture of chloramphenicol plus tetracycline caused MSH and 3-MPA to accumulate steadily. In the presence of inhibitors, accumulation rates of MSH ranged from 18 to 730 nM · d^-1 and those of 3-MPA ranged from 0 to 185 nM · d^-1. Tungstate and chloroform generally gave the highest accumulation rates, while molybdate gave the lowest, possibly due to its complexation with sulfhydryl compounds. BES (2-Bromoethanesulfonate) was also tested for its effects, but no 3-MPA and only trace amounts (19 nM · d^-1) of MSH accumulated with this treatment. However, additions of BES (10 mM) to sulfidic sediments caused significant (8 M · d^-1) production of 2-mercaptoethanesulfonate (HS-CoM). Formation of HS-CoM was abiotic and was due to sulfide attack on the bromine atom in BES. The accumulations of 3-MPA and MSH in the presence of several different microbial inhibitors, suggests that these thiols may turn over in anoxic sediments. The relatively low concentrations of thiols observed in pore water profiles may be due to continuous microbial removal of these compounds. Much larger amounts of thiols were associated with sediment particles than present in the pore water. Evidence is presented which suggests that bound thiols may be exchangeable with the porewater, and therefore potentially available for microbial consumption.     

Dynamics of extracellular DNA in the marine environment

The production and turnover of dissolved DNA in subtropical estuarine and oligotrophic oceanic environments were investigated. Actively growing heterotrophic bacterioplankton (i.e., those capable of [3H]thymidine incorporation) were found to produce dissolved DNA, presumably through the processes of death and lysis, grazing by bacteriovores, and excretion. Production of dissolved DNA as determined by [3H]thymidine incorporation was less than or equal to 4% of the ambient dissolved DNA concentration per day. In turnover studies, the addition of [3H]DNA (Escherichia coli chromosomal) to seawater resulted in rapid hydrolysis and uptake or radioactivity by microbial populations. DNA was hydrolyzed by both cell-associated and extracellular nucleases, in both estuarine and offshore environments. Kinetic analysis performed for a eutrophic estuary indicated a turnover time for dissolved DNA as short as 6.5 h. Microautoradiographic studies of bacterial populations in Tampa Bay indicated that filamentous and attached bacteria took up most of the radioactivity from [3H]DNA. Dissolved DNA is therefore a dynamic component of the dissolved organic matter in the marine environment, and bacterioplankton play a key role in the cycling of this material.     

Dynamics of extracellular DNA in the marine environment.

The production and turnover of dissolved DNA in subtropical estuarine and oligotrophic oceanic environments were investigated. Actively growing heterotrophic bacterioplankton (i.e., those capable of [3H]thymidine incorporation) were found to produce dissolved DNA, presumably through the processes of death and lysis, grazing by bacteriovores, and excretion. Production of dissolved DNA as determined by [3H]thymidine incorporation was less than or equal to 4% of the ambient dissolved DNA concentration per day. In turnover studies, the addition of [3H]DNA (Escherichia coli chromosomal) to seawater resulted in rapid hydrolysis and uptake or radioactivity by microbial populations. DNA was hydrolyzed by both cell-associated and extracellular nucleases, in both estuarine and offshore environments. Kinetic analysis performed for a eutrophic estuary indicated a turnover time for dissolved DNA as short as 6.5 h. Microautoradiographic studies of bacterial populations in Tampa Bay indicated that filamentous and attached bacteria took up most of the radioactivity from [3H]DNA. Dissolved DNA is therefore a dynamic component of the dissolved organic matter in the marine environment, and bacterioplankton play a key role in the cycling of this material.     

Simian crease in man: some methodological considerations

There is no agreement among workers in defining the Simian crease, thus making it difficult to compile or compare their works. The Simian crease, invariably present among anthropoid apes and frequent among mongoloid idiots, is also present in varying degrees among normal populations. Mode of inheritance of this trait is not yet established. This paper attempts to examine critically the definitions and classifications forwarded by various authorities. A new definition has been suggested considering the course of both the distal and the proximal creases. A new classification, to include all transitional variations has also been proposed. A progressive transition from the typical Simian crease to the normal crease configuration is recognized. Further investigation to assess the hereditability of Simian as well as normal creases is emphasized.     

Variable rates of phosphate uptake by shallow marine carbonate sediments: Mechanisms and ecological significance

We determined phosphate uptake by calcareous sediments at two locations within a shallow lagoon in Bermuda that varied in trophic status, with one site being mesotrophic and the other being more eutrophic. Phosphate adsorption over a six hour period was significantly faster in sediments from the mesotrophic site. Uptake at both sites was significantly less than that reported for a similar experiment on calcareous sediments in an oligotrophic lagoon in the Bahamas. The difference in phosphorus adsorption between our sites did not appear to be related to sediment characteristics often cited as important, such as differences in surface area (as inferred from grain size distributions), total organic matter content, or iron content. However, the sediment total phosphorus contents were inversely related to phosphorus uptake at our sites in Bermuda, and at the previously studied Bahamas site.We hypothesize that phosphate uptake in these calcareous sediments is a multi-step process, as previously described for fluvial sediments or pure calcium carbonate solids, with rapid initial surface chemisorption followed by a slower incorporation into the carbonate solid-phase matrix. Accordingly, sediments already richer in solid phase phosphorus take up additional phosphate more slowly since the slower incorporation of surface-adsorbed phosphate into the carbonate matrix limits the rate of renewal of surface-reactive adsorption sites.Although carbonate sediments are a sink for phosphate, and thereby reduce the availability of phosphorus for benthic macrophytes and phytoplankton in the shallow overlying water, phosphate uptake by these sediments appears to decrease along a gradient from oligotrophic to eutrophic sites. If our result is general, it implies a positive feedback in phosphorus availability, with a proportionately greater percentage of phosphorus loading being biologically available longer as phosphorus loading increases. This pattern is supported by the significantly higher tissue phosphorus content of the seagrass,Thalassia testudinum, collected from the eutrophic inner bay site. Over time, this effect may tend to cause a shift from phosphorus to nitrogen limitation in some calcareous marine environments.     

Preservation potential of ancient plankton DNA in Pleistocene marine sediments

Recent studies have shown that ancient plankton DNA can be recovered from Holocene lacustrine and marine sediments, including from species that do not leave diagnostic microscopic fossils in the sediment record. Therefore, the analysis of this so-called fossil plankton DNA is a promising approach for refining paleoecological and paleoenvironmental information. However, further studies are needed to reveal whether DNA of past plankton is preserved beyond the Holocene. Here, we identified past eukaryotic plankton members based on 18S rRNA gene profiling in eastern Mediterranean Holocene and Pleistocene sapropels S1 (~9 ka), S3 (~80 ka), S4 (~105 ka), and S5 (~125 ka). The majority of preserved ~400- to 500-bp-long 18S rDNA fragments of microalgae that were studied in detail (i.e. from haptophyte algae and dinoflagellates) were found in the youngest sapropel S1, whereas their specific lipid biomarkers (long-chain alkenones and dinosterol) were also abundant in sediments deposited between 80 and 124 ka BP. The late-Pleistocene sediments mainly contained eukaryotic DNA of marine fungi and from terrestrial plants, which could have been introduced via the river Nile at the time of deposition and preserved in pollen grains. A parallel analysis of Branched and Isoprenoid Tetraethers (i.e. BIT index) showed that most of the organic matter in the eastern Mediterranean sediment record was of marine (e.g. pelagic) origin. Therefore, the predominance of terrestrial plant DNA over plankton DNA in older sapropels suggests a preferential degradation of marine plankton DNA.     

Phytoplankton detection and DSP toxicity: methodological considerations

Two different phytoplankton sampling methods (bottle and net sampling) were used to evaluate the concentration of toxicDinophysis species in seawater and their correlation to mussel toxicity, assessed by mouse bioassay.Dinophysis concentration in net samples revealed the higher correlation to mussel toxicity (r=0.75,p<0.01). Net sampling therefore seems more suitable for the detection of low abundance species likeDinophysis characterised by vertical aggregations at different depths in the water column.     

Nicotine administration to rats: methodological considerations

The effects of nicotine on normal physiological function are of increasing concern. Preliminary to studies on the effects of prenatal exposure to nicotine, we examined methods of administering nicotine to rats. Drinking water containing nicotine was not palatable to rats and was an unsatisfactory method in our hands, producing weight loss and large decreases in fluid intake. Administration of nicotine in a complete liquid diet produced better results but the data suggest that oral administration of nicotine may interfere with absorption of some nutrients. Osmotic mini-pumps were found to be the best mechanism of nicotine delivery of those tried. There were no significant effects on food or water intake nor on weight gain, particularly when using a short term anesthetic for pump implantation. Plasma nicotine and cotinine levels were directly correlated to dose of nicotine delivered. Plasma nicotine levels similar to levels reported in humans were obtained.     

Red blood cell-mediated microinjection: methodological considerations

Red blood cell-mediated microinjection is a powerful approach to introducing proteins into the cytoplasm of cultured cells. In the course of our microinjection studies of intracellular protein degradation, we have encountered several potential problems with certain proteins. The microinjection procedure may be accompanied by denaturation of protein by radiolabeling procedures, binding of protein to red cell ghosts during loading, degradation of protein by the red cell ghost prior to microinjection, and adsorption of protein that leaks from red cell ghosts in the presence of fusogen to the fibroblast monolayer. We conclude with a list of points that must be considered prior to use of red cell-mediated microinjection to study a particular protein.     

Biological availability and turnover rate of acetate in marine and estuarine sediments in relation to dissimilatory sulphate reduction

Abstract Acetate turnover rates were determined using ¹⁴C acetate in sediment slurries from two Scottish sea lochs and an estuary which had different rates of oxygen uptake and sulphate reduction. Turnover rates in Loch Etive and Loch Eil were 0.504 and 0.651 μMh⁻¹ respectively, but in the River Tay Estuary there was substantially higher acetate turnover (12.22 μMh⁻¹). The addition of 20 mM sodium molybdate, a specific metabolic inhibitor of sulphate-reducing bacteria (SRB), resulted in a complete inhibition of acetate turnover. These data suggest that SRB were solely responsible for acetate oxidation in these sediments. A comparison of acetate turnover rates in the absence of molybdate and accumulation rate in the presence of the inhibitor demonstrated that at least two pools of acetate with different biological availabilities existed. In Loch Etive only 19% of chemically measured acetate was available with corresponding values of 48% and 65% for Loch Eil and the Tay Estuary respectively.     

Measurement of plasma adenosine concentration: methodological and physiological considerations

This study tested the hypothesis that measurements of plasma adenosine concentration made on samples of blood obtained in dipyridamole and EHNA (i.e., "stopping solution") may be falsely elevated as a result of ongoing in vitro production and accumulation of adenosine during sample processing. Studies were performed with samples of anticoagulated blood obtained from anesthesized domestic swine. Adenosine concentration of ultra filtrated plasma was determined by high-pressure liquid chromatography (HPLC). The following parameters were evaluated: (i) rate of clearance of [3H]adenosine added to plasma, (ii) endogenous adenosine concentration of matched blood samples obtained in "stopping solution" alone, "stopping solution" plus EDTA, and perchloric acid (PCA), (iii) plasma and erythrocyte endogenous adenosine concentration in nonhemolyzed samples, and (iv) plasma adenosine concentration of samples hemolyzed in the presence of "stopping solution" alone or "stopping solution" plus EDTA. We observed that (i) greater than or equal to 95% of [3H]adenosine added to plasma is removed from it by formed elements of the blood in less than 20 s, (ii) plasma adenosine concentration of samples obtained in "stopping solution" alone is generally 10-fold greater than that of matched samples obtained in "stopping solution" plus EDTA, (iii) deliberate mechanical hemolysis of blood samples obtained in "stopping solution" alone resulted in substantial augmentation of plasma adenosine levels in comparison with matched nonhemolyzed specimens--addition of EDTA to "stopping solution" prevented this, and (iv) adenosine content of blood samples obtained in PCA agreed closely with the sum of plasma and erythrocyte adenosine content of samples obtained in "stopping solution" plus EDTA. The data obtained demonstrate that (i) plasma adenosine concentrations are falsely elevated in samples of blood obtained in "stopping solution" alone, and (ii) addition of EDTA to "stopping solution" blocks in vitro production and accumulation of adenosine. Finally, rapid removal of adenosine from plasma by formed elements of blood may make it difficult to employ measurements of plasma adenosine concentration to assess physiological processes even in the absence of in vitro production of the nucleoside.     

Plasma levels of human neurotensin: methodological and physiological considerations

The ingestion of a meal high in fat content is known to increase circulating levels of neurotensin (NT) in humans. However, the magnitude of the postprandial rise of NT in the general circulation and its physiological significance have been subject of much debate. The present study examines circulating levels of NT in male volunteers prior to and following each of their three daily meals (ca. 31 g fat/meal). The response observed are also compared to that elicited by the direct instillation of intralipid (ca. 44 g fat) into the duodenum. NT levels were determined by radioimmunoassay of acid/acetone extracted plasma fractionated by high pressure liquid chromatography. Meals caused a significant but modest increase in NT levels, with the largest increment (ca. 4 fmol/ml) occurring after breakfast. In contrast, NT levels increased ca. 20 fmol/ml with intraduodenal instillation of lipid. The meal-stimulated increases in circulating NT measured here are 4- to 5-fold less than those reported by others, the difference most likely reflecting the lesser amount of lipid ingested. Previous studies provided subjects with single meals containing in excess of 120 g of fat; the 30 g of fat ingested by our subjects, ca. 33% of total caloric intake, is near that recommended by the U.S. Senate, Select Committee on Nutritional and Human Needs. These data show that diets with a reasonable fat content have only a modest effect on circulating levels of NT.     

DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments

In order to evaluate whether different DNA extraction procedures can affect estimates of benthic bacterial diversity, based on 16S rRNA gene terminal restriction fragment length polymorphism (T-RFLP) fingerprinting technique, we compared two in situ lysis procedures (a SDS-based protocol and a commercial kit for DNA recovery) and one cell-extraction protocol on a variety of marine sediments. Despite the two in situ lysis procedures resulted in significantly different DNA yields (highest with the SDS in situ lysis), estimates of bacterial diversity provided a not significantly different ribotype richness, as well as similar values of the Shannon-Wiener (H') and Margalef (d) indices of biodiversity and of evenness (Pielou index, J). Conversely, the cell-extraction procedure for DNA extraction resulted always in a significantly lower ribotype richness and diversity. The analysis of similarities (anosim) among the T-RFLP electropherograms allowed concluding that ribotypes composition did not change significantly using different protocols. However, the analysis of beta-diversity (turnover diversity) revealed that a large number of ribotypes was observed exclusively with one of the three protocols utilized. When unshared ribotypes from in situ lysis and cell extraction were pooled together, total ribotype richness resulted much higher (up to 80%). Our results indicate that estimates of ribotype diversity based on a single protocol of DNA extraction can significantly underestimate the total number of bacterial ribotypes present in the benthic domain. We recommend that future studies will not only integrate different DNA extraction procedures, but also will explore the possibility of integrating two or more different genetic markers in order to increase our ability to detect the actual bacterial diversity in environmental samples.     

The ecological significance of sulfur in the energy dynamics of salt marsh and coastal marine sediments

Sulfur is an important element in the metabolism of salt marshes and subtidal, coastal marine sediments because of its role as an electron acceptor, carrier, and donor. Sulfate is the major electron acceptor for respiration in anoxic marine sediments. Anoxic respiration becomes increasingly important in sediments as total respiration increases, and so sulfate reduction accounts for a higher percentage of total sediment respiration in sediments where total respiration is greater. Thus, sulfate accounts for 25% of total sediment respiration in nearshore sediments (200 m water depth or less) where total respiration rates are 0.1 to 0.3gCm^–1 day^–1 , for 50% to 70% in nearshore sediments with higher rates of total respiration (0.3 to 3gCm^–2 day^–1), and for 70% to 90% in salt marsh sediments where total sediment respiration rates are 2.5 to 5.5gcm^–2 day^–1 .During sulfate reduction, large amounts of energy from the respired organic matter are conserved in inorganic reduced sulfur compounds such as soluble sulfides, thiosulfate, elemental sulfur, iron monosulfides, and pyrite. Only a small percentage of the reduced sulfur formed during sulfate reduction is accreted in marine sediments and salt marshes. When these reduced sulfur compounds are oxidized, energy is released. Chemolithoautotrophic bacteria which catalyze these oxidations can use the energy of oxidation with efficiencies (the ratio of energy fixed in organic biomass to energy released in sulfur oxidation) of up to 21–37% to fix CO₂ and produce new organic biomass.Chemolithoautotrophic bacterial production may represent a significant new formation of organic matter in some marine sediments. In some sediments, chemolithoautotrophic bacterial production may even equal or exceed organoheterotrophic bacterial production. The combined cycle of anaerobic decomposition through sulfate reduction, energy conservation as reduced sulfur compounds; and chemolithoautotrophic production of new organic carbon serves to take relatively low-quality organic matter from throughout the sediments and concentrate the energy as living biomass in a discrete zone near the sediment surface where it can be readily grazed by animals.Contribution from a symposium on the role of sulfur in ecosystem processes held August 10, 1983, at the annual meeting of the A.I.B.S., Grand Forks, ND; Myron Mitchell, convenor.     

Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments

Molecular approaches that target the total DNA pool recovered from permanently anoxic marine ecosystems have revealed an extraordinary diversity of prokaryotes and unicellular eukaryotes. However, the presence of gene sequences contained within the extracellular DNA pool is still largely neglected. We have investigated the preservation, origin and genetic imprint of extracellular DNA recovered from permanently anoxic deep-sea sediments of the Black Sea. Despite high DNase activities, huge amounts of total extracellular DNA were found in both the surface and subsurface sediment layers, suggesting reduced availability of the extracellular DNA pool to nuclease degradation. The reduced degradation of the total extracellular DNA was confirmed by its low decay rate and the high accumulation in the deeper sediment layers. The copy numbers of 16S and 18S rDNA contained within the extracellular DNA pool in both the surface and subsurface sediment layers was very high, indicating that permanently anoxic sediments of the deep Black Sea are hot spots of preserved extracellular gene sequences. The extracellular DNA recovered from these sediment layers also contained highly diversified 18S rDNA sequences. These were not only representative of the major protistan lineages, but also of new very divergent lineages, branching as independent clades at the base of the tree. Our findings indicate that the extracellular DNA pool is a major archive of present/past eukaryotic gene sequences, and they highlight the importance of integrating molecular cell-oriented approaches with molecular analyses of the extracellular DNA pool, for a better assessment of microbial diversity and temporal changes in marine benthic ecosystems.     

Analysis of zooplankton feeding experiments: some methodological considerations

Studies of the feeding ecology of zooplankton are noted morefor the problems associated with their quantitative analysesthan for their conclusions. In order to illustrate one particularlyinsidious problem, I use several more or less traditional methodsto obtain rather different results from experiments with themarine calanoid copepod Eucalanus pileatus and a variety ofphytoplankton. If the probabilities of encountering algal cellsof various taxa are proportional to their environmental frequencies,as is implicit in a feeding mechanism based upon improbableanalogy with a leaky sieve, E. pileatus seems to capture largecells more efficiently than small ones. If these frequenciesare weighted by the average cross-sectional areas of individualcells (i.e., those of spheres of equivalent volume), as wouldbe appropriate if they were intercepted (i.e., encountered)by single fibers (e.g., maxillary setae or setules), then E.pileatus seems to capture small cells more efficiently thanlarge ones. Inasmuch as these conflicting observations resultfrom different conceptions of the feeding mechanism, and sievingis only one of several reasonable alternatives that emerge fromthe relevant fluid dynamics, evidently the mechanism of feedingmust be elucidated before passive selection can be properlycharacterized. However, the feeding mechanism need not be understoodin order to study consumers whose behavior changes with therelative abundance of prey. I find that selectivity by E. pileatusvaries with algal concentration, and that large cells are consumeddisproportionately relative to their frequencies at high concentrations(in accord with results of other investigators), but that smallcells are consumed disproportionately relative to their encounterprobabilities (here a function of size as well as frequency,although other characteristics, such as scent and shape, maybe involved as well) irrespective of concentration. This observationis incompatible with the contemporary paradigm of zooplanktonfeeding, but it does not seem unreasonable considering the sizeand spatial distributions of particles in the ocean. Consequently,these results support the alternative hypothesis that consumersadapt to characteristics of the prey that they encounter mostfrequently.     

Assessment of heavy metal pollution and ecological risk in marine sediments (A case study: Persian Gulf)

This study was made to determine the pollution status and potential ecological risk of heavy metals in sediment of Persian Gulf. Surface sediments were collected seasonally by Peterson grab, and the concentrations of heavy metals were measured by using inductively coupled plasma–optical emission spectrometry (ICP–OES). The range concentrations obtained in mg/kg were 10,800–22,400 for Fe, 5.32–10.12 for Pb, 24.63–42.38 for Ni, 22.52–39.46 for Cu, and 31.64–47.20 for Cr. The concentrations of Pb, Ni, Cu, and Cr have been found lower than the Interim Sediment Quality Guidelines and probable effect level values suggesting that heavy metal contents in sediments from area of study would not be expected to cause adverse biological effects on the biota. The obtained enrichment factor values for various metals were between minimal enrichment (Pb = 0.5) and extremely enrichment (Cu = 3.11). The values of I_geo for Pb, Ni, Cu, and Cr were characterized under no pollution (0). The highest value of potential ecological risk index (RI) (8.36) was observed at St. 4 while the lowest value (5.25) was detected at station 6. Based on potential ecological RI, the Persian Gulf had low ecological risk.