Granular Nematicides for Control of the Yam Nematode,Scutellonema bradys, and Relevant Residues in Raw Tubers

Four granular nentaticides were evaluated for control of the yam nematode, Scutellonema bradys (Steiner &LeHew) Andrassy, on Guinea yam, Dioscorea rotundata Poir, under field conditions prevelant in the tropics. A single application of nematicides (sidedressing) at the rate of 2 kg ai/ha as postplanting treatment at the onset of the rainy season depressed numbers of S. bradys attacking yams during the growing season and significantly increased tuber yields over untreated. The efficacy, based on the regression coefficient values of evaluated nematicides, was in the order of miral, carbofuran, aldicarb, and oxamyl (b = -75.9, -75.5, -72.1, and -65.9, respectively). Yam tuber yields increased by 136.9, 90.6, 87.9, and 85.3% over untreated (P = 0.05) in aldicarb, carbofuran, oxamyl, and miral treated plots, respectively. Residues in raw tubers pretreated with aldicarb, carbofuran, or miral were negligible (front less than 0.02 to 0.3 ppm) and far below the established tolerance levels (l.0 and 1.3 ppm for aldicarb and carbofuran, respectively) of a related crop in the United States. This is the first report on residues of systemic pesticides in yams.     

Strategies to combat the problem of yam anthracnose disease: Status and prospects

Yam (Dioscorea spp.) anthracnose, caused by Colletotrichum alatae, is the most devastating fungal disease of yam in West Africa, leading to 50%–90% of tuber yield losses in severe cases. In some instances, plants die without producing any tubers or each shoot may produce several small tubers before it dies if the disease strikes early. C. alatae affects all parts of the yam plant at all stages of development, including leaves, stems, tubers, and seeds of yams, and it is highly prevalent in the yam belt region and other yam-producing countries in the world. Traditional methods adopted by farmers to control the disease have not been very successful. Fungicides have also failed to provide long-lasting control. Although conventional breeding and genomics-assisted breeding have been used to develop some level of resistance to anthracnose in Dioscorea alata, the appearance of new and more virulent strains makes the development of improved varieties with broad-spectrum and durable resistance critical. These shortcomings, coupled with interspecific incompatibility, dioecy, polyploidy, poor flowering, and the long breeding cycle of the crop, have prompted researchers to explore biotechnological techniques to complement conventional breeding to speed up crop improvement. Modern biotechnological tools have the potential of producing fungus-resistant cultivars, thereby bypassing the natural bottlenecks of traditional breeding. This article reviews the existing biotechnological strategies and proposes several approaches that could be adopted to develop anthracnose-resistant yam varieties for improved food security in West Africa.     

Impact of farmer selection on yam genetic diversity

In the traditional yam agricultural system, by way of an ennoblement practice, farmers select tubers from the wild for cultivation. In order to assess the impact of that practice on the genetic diversity of yam, we studied the genetic structure of yams obtained after at least 3 years of ennoblement, to which farmers gave the name of traditional varieties. Cultivated yams do not always have the same genotype as homonymous traditional varieties. For the first time, we demonstrated selection by farmers through the ennoblement of genotypes found in neighbouring villages. Their adoption has a double impact: it allows an increase in the polyclonality of varieties and an indirect exchange of yam tubers between farmers. We also demonstrated that wild yams and hybrids between wild and cultivated yams are also selected. However, their adoption seems less frequent, suggesting selection and valuation of ennobled yams before integration into the cultivated pool. Finally, the adaptive advantage of wild and hybrid yams and their role in yam agrosystems are discussed.     

Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin

The impact of traditional farmers' management on genetic diversity of vegetatively propagated crops is poorly documented. In this study, we analysed the impact of ennoblement of spontaneous yams, an original traditional farmers' practice, on the genetic diversity of yam (Dioscorea sp.) in Benin. We used 11 microsatellite markers on yam tubers from a small village in northern Benin and demonstrated that wild x cultivated hybrids are spontaneously formed. Many of the spontaneous yams collected by farmers from surrounding savannah areas for ennoblement were shown to be of wild and hybrid genotypes. Moreover, we demonstrated that some yam varieties have a wild or hybrid signature. Lastly, we performed a broader ranging genetic analysis on yam material from throughout Benin and showed that this practice is used in different ecological and ethno-linguistic regions. Through this practice, farmers create new varieties with new genetic combinations via sexual reproduction of wild and cultivated yams. This system, whereby a sexual cycle and asexual propagation are mixed, ensures potential large-scale cultivation of the best genotypes while preserving the potential for future adaptation.     

Preponderance and distribution of plant-parasitic nematodes in Nassarawa State,North Central Nigeria: Consequences for healthy tuber production and export

One of the most cosmopolitan pests responsible for considerable negative economic impacts on yam is the plant-parasitic nematodes. They are also capable of facilitating fungal, bacterial and viral infections of yams. In order to produce healthy yam seeds to meet local demand and tubers for export, there is a need to identify nematode-free areas in Nassarawa, one of the hubs of yam production in Nigeria. To this end, 30 major yam growing communities of the state were surveyed to identify nematode-free areas. Structured questionnaires were administered to three farmers in each of the 10 local government areas selected. Results showed that 97% of the study areas investigated was seriously infested with the three key genera of plant-parasitic nematodes namely Scutellonema, Pratylenchus and Meloidogyne. Incidence and severity of tuber deterioration in transit threatened acceptability of the tubers when it eventually reached England. Healthy yams would attract more income than damaged ones.     

Concentrated Distribution of Wild Yam Patches: Historical Ecology and the Subsistence of African Rainforest Hunter-Gatherers

Availability of annually reproducing wild yam species (Dioscorea praehensilis and Dioscorea semperflorens) is considered to be a key factor for the viability of forest hunter-gatherer subsistence in the African rainforests. I here describe the habitat and distribution of wild yam patches, and discuss possible human impacts on the formation of wild yam patches, which currently support long-term forest expeditions by Baka hunter-gatherers in southeastern Cameroon. An analysis of canopy photographs shows that annual yams favor a habitat of canopy gaps which receive sufficient sunlight. However, the fact that annual yams patches are limited to specific locations even though gaps in the canopy occur throughout the forest, combined with the mostly vegetative reproductive system of the yams, suggests annual yams do not propagate extensively in the wild. Moreover, areas with abundant annual yam patches that are presently situated far from any villages contain several abandoned village sites. Since the Baka often transplant parts of yam tubers to encourage their spread, it seems that human activities may have contributed to the formation of locally concentrated annual yam patches.     

Transformation associated with catecholase in Dioscorea alata during storage

The Michaelis constant of catecholase in 3 cultivars of Dioscorea alata was determined. Oxidative browning was related to the activity of the enzyme in the yams. Inhibition by cysteine was competitive, while 2-mercaptoethanol caused an uncompetitive type of inhibition. On DEAE column chromatography a minor peak preceded the major peak in the fresh yam while a minor peak was eluted after the major peak in the stored yam.     

Studies on Biological Control of Postharvest Rot in Yams (Dioscorea spp.) using Trichoderma viride

From in vitro and in vivo screening tests for antagonism by isolates of Trichoderma against postharvest pathogens of yams (Dioscorea spp.), an isolate of Trichoderma viride Pers. ex S.F. Gray was selected as the most promising candidate for the biocontrol of postharvest rot of yams. Inoculation of white yam (Dioscorea rotundata Poir.) with conidiaspores of T. viride and subsequent storage of the tubers under the ambient environment conditions of a traditional yam barn, resulted in a drastic reduction in the frequency of occurrence of the normal tuber surface mycoflora over a 4‐month (December‐April) storage period. Trichoderma viride on the other hand, maintained a high frequency of occurrence during the same period. Furthermore, whereas up to 52.0%) rot was found among groups of tubers that were artificially inoculated with the postharvest pathogens of yams, Aspergillus niger Van Tiegh., Botryodiplodia theobromae Pat. or Penicillium oxalicum Currie and Thom, and also the group that was not inoculated with any organism (control), among groups of tubers that were inoculated with T. viride the rot was either totally suppressed or only a low percentage of rot occurred. The significance of the findings is discussed in relation to yam storage especially by farmers with limited resources.     

Uncovering the genetic diversity of yams (Dioscorea spp.) in China by combining phenotypic trait and molecular marker analyses

Yam is an important edible tuber and root plant worldwide; China as one of the native places of yams has many diverse local resources. The goal of this study was to clarify the genetic diversity of the commonly cultivated yam landraces and the genetic relationship between the main yam species in China. In this study, 26 phenotypic traits of 112 yam accessions from 21 provinces in China were evaluated, and 24 simple sequence repeat (SSR) and 29 sequence‐related amplified polymorphism (SRAP) markers were used for the genetic diversity analysis. Phenotypic traits revealed that Dioscorea opposita had the highest genetic diversity, followed by D. alata, D. persimilis, D. fordii, and D. esculenta. Among the 26 phenotypic traits, the Shannon diversity indexes of leaf shape, petiole color, and stem color were high, and the range in the variation of tuber‐related traits in the underground part was higher than that in the aboveground part. All accessions were divided into six groups by phenotypic trait clustering, which was also supported by principal component analysis (PCA). Molecular marker analysis showed that SSR and SRAP markers had good amplification effects and could effectively and accurately evaluate the genetic variation of yam. The unweighted pair‐group method with arithmetic means analysis based on SSR‐SRAP marker data showed that the 112 accessions were also divided into six groups, similar to the phenotypic trait results. The results of PCA and population structure analysis based on SSR‐SRAP data also produced similar results. In addition, the analysis of the origin and genetic relationship of yam indicated that the species D. opposita may have originated from China. These results demonstrate the genetic diversity and distinctness among the widely cultivated species of Chinese yam and provide a theoretical reference for the classification, breeding, germplasm innovation, utilization, and variety protection of Chinese yam resources.     

Changes in morphological, thermal and pasting properties of yam (Dioscorea alata) starch during growth

This study was carried out in order to compare and establish the changes in physicochemical properties of starch from four different cultivars of yam at various stages of maturity during growth. The results showed that the starch content of the four yam tubers increased as growth progressed and were in the range of 70.5–85.3% on a dry basis. The shapes of the starch granules were round to oval or angular in the four yams and the size of starch granule increased with growth time ranging from 10 to 40 μm. The X-ray diffraction patterns could be classified as typical of B-type starch for the four cultivars of yam starch. The transition temperature of gelatinization of the four yam starches decreased during maturity. The RVA parameters suggested that yam starch paste showed a lower breakdown at an early harvest time. It appeared to be thermo-stable during heating but had a high setback after cooling, which might result in a tendency towards high retrogradation. The results for pasting behaviors showed that higher amylose content was associated with a lower pasting temperature and a higher peak viscosity in these starches.     

Diversity of Breadfruit (<Emphasis Type="Italic">Artocarpus altilis</Emphasis>, Moraceae) Seasonality: A Resource for Year-Round Nutrition<Superscript>1</Superscript>

Diversity of Breadfruit ( Artocarpus altilis , Moraceae) Seasonality: A Resource for Year-Round Nutrition. Breadfruit, Artocarpus altilis (Parkinson) Fosberg, is an important but underutilized staple crop cultivated throughout Oceania and much of the wet tropics. Indigenous peoples have selected and cultivated cultivars with different fruiting seasons to effectively extend fruit production for most of the year. In the present study, the seasonality of 219 breadfruit accessions originating from 17 Pacific island groups, the Seychelles, the Philippines, and Indonesia, and now growing in the National Tropical Botanical Garden’s (NTBG) Kahanu Garden, Hana, Hawaii, were evaluated. The predominant season of male flower production for most cultivars was from May to September, and fruit was produced most frequently between August and January. However, there were differences in the duration of the fruiting season from year to year and among cultivars. Over the 10-year period, 14 cultivars did not reliably produce fruit; most of this group were ‘ulu afa’ trees collected from Tokelau. About 24 cultivars exhibited very little seasonality and produced fruit throughout the year. The rest of the cultivars could be clustered into seasonality groups with characteristic fruiting patterns. Comparison of literature values indicates that unlike Hawaii, the breadfruit season in most locations begins around the date the sun reaches zenith prior to the summer months and extends throughout the summer months. Five cultivars asexually propagated from the NTBG collection growing in Kiribati (1°28′ N) exhibit similar fruiting patterns as in Hawaii, except that they begin 2–3 months earlier. These data predict that cultivars with complementary fruiting seasons in Hawaii may experience a temporal shift in their seasonality but will maintain their compatibility when cultivated in different locations and could enable year-round fruit production in many regions.     

Complex origins of breadfruit (Artocarpus altilis, Moraceae): implications for human migrations in Oceania

Breadfruit (Artocarpus altilis, Moraceae), a traditional starch crop in Oceania, has enjoyed legendary status ever since its role in the infamous mutiny aboard the H.M.S. Bounty in 1789, yet its origins remain unclear. Breadfruit's closest relatives are A. camansi and A. mariannensis. DNA fingerprinting data (AFLP, amplified fragment length polymorphisms) from over 200 breadfruit cultivars, 30 A. camansi, and 24 A. mariannensis individuals were used to investigate the relationships among these species. Multivariate analyses and the identification of species-specific AFLP markers indicate at least two origins of breadfruit. Most Melanesian and Polynesian cultivars appear to have arisen over generations of vegetative propagation and selection from A. camansi. In contrast, most Micronesian breadfruit cultivars appear to be the result of hybridization between A. camansi-derived breadfruit and A. mariannensis. Because breadfruit depends on humans for dispersal, the data were compared to theories on the human colonization of Oceania. The results agree with the well-supported theory that humans settled Polynesia via Melanesia. Additionally, a long-distance migration from eastern Melanesia into Micronesia is supported.     

In vitro induction of minitubers in yam (<Emphasis Type="Italic">Dioscorea cayenensis</Emphasis>- <Emphasis Type="Italic">D. rotundata</Emphasis> complex)

Two methods were used to produce yam minitubers from two different yam cultivars (cv. Krengle and cv. Kponan) using in vitro culture techniques. Method 1: Yam microtubers were first initiated in vitro and then transplanted to soil to generate plants from which minitubers were produced. Yam plants were obtained either by directly planting the microtubers to soil, or by inducing the germination of the microtubers using various chemical and physical treatments, before their transfer to soil. Method 2: Yam plantlets were first produced in vitro and then transplanted to soil for further development and tuber production. In both methods, the presence of jasmonic acid (JA) in the culture medium was found to be essential for yam tuberization, as well as for the germination of yam microtubers. In vitro production of yam microtubers was variety dependant. Compared to cv. Krengle, cv. Kponan responded better to microtuberization, and 2.5 μM JA was the optimum concentration resulting in 70 and 90% explants producing microtubers in the MS medium and the Tuberization medium (T-medium), respectively. Germination of the microtubers required treatment of JA at concentrations ranging from 1.0 to 2.5 μM. The overall length of the process to produce minitubers from microtubers took 32 weeks. In contrast, minitubers were obtained within 20 weeks when plantlets were directly transferred to soil. In this case, plantlets were first grown for 8 weeks on medium containing JA (0.1–1.0 μM) and 8% sucrose to initiate plant growth and rooting.     

Next-generation sequencing based genotyping,cytometry and phenotyping for understanding diversity and evolution of guinea yams

Key message

Genotyping by sequencing (GBS) is used to understand the origin and domestication of guinea yams, including the contribution of wild relatives and polyploidy events to the cultivated guinea yams.

Abstract

Patterns of genetic diversity within and between two cultivated guinea yams (Dioscorea rotundata and D. cayenensis) and five wild relatives (D. praehensilis, D. mangenotiana, D. abyssinica, D. togoensis and D. burkilliana) were investigated using next-generation sequencing (genotyping by sequencing, GBS). Additionally, the two cultivated species were assessed for intra-specific morphological and ploidy variation. In guinea yams, ploidy level is correlated with species identity. Using flow cytometry a single ploidy level was inferred across D. cayenensis (3x, N = 21), D. praehensilis (2x, N = 7), and D. mangenotiana (3x, N = 5) accessions, whereas both diploid and triploid (or aneuploid) accessions were present in D. rotundata (N = 11 and N = 32, respectively). Multi-dimensional scaling and maximum parsimony analyses of 2,215 SNPs revealed that wild guinea yam populations form discrete genetic groupings according to species. D. togoensis and D. burkilliana were most distant from the two cultivated yam species, whereas D. abyssinica, D. mangenotiana, and D. praehensilis were closest to cultivated yams. In contrast, cultivated species were genetically less clearly defined at the intra-specific level. While D. cayenensis formed a single genetic group, D. rotundata comprised three separate groups consisting of; (1) a set of diploid individuals genetically similar to D. praehensilis, (2) a set of diploid individuals genetically similar to D. cayenensis, and (3) a set of triploid individuals. The current study demonstrates the utility of GBS for assessing yam genomic diversity. Combined with morphological and biological data, GBS provides a powerful tool for testing hypotheses regarding the evolution, domestication and breeding of guinea yams.     

Axillary proliferation and tuberisation of Dioscorea cayenensis–D. rotundata complex

Yams (Dioscorea spp) are tuber crops used as staple food in Africa because of their nutritional value. However agronomic constraints, phytosanitary problems and the lack of good healthy planting material restrict their production. In contrast to the inefficiency of traditional method of planting, tissue culture techniques allow to increase the multiplication and the rapid production of pathogen- free plant material. This work was undertaken to provide farmers in African countries with healthy microplants and microtubers as seeds. In vitro nodal segments of two varieties of local yams D. cayenensis–D. rotundata complex (cv. ‘Singo’, cv. ‘Singou’ and cv. ‘Gnidou’) were micropropagated on the modified medium of Murashige and Skoog. The morphogenesis, the growth of microplants and microtuber formation have been found to be controlled by external factors that act individually and synergistically. Addition of kinetin (2 mg l⁻¹) to the culture media could reduce multiplication rate (node number) of some clones. An increase of the sucrose concentration from 3% to 5% induced no change in the multiplication and tuberisation parameters. An important reduction of the multiplication (shoot number, height and node number) and the tuberisation (tuber number and length) was observed with 8% sucrose. Multiplication (shoot and node number) was increased in the presence of jasmonic acid (10 μM). JA also induced an increase of tuber number in the absence of Kin. Multiplication of yam by in vitro growth of nodal segments is a way for rapid clonal multiplication and could allow solving the problem of lack of seed material faced by farmers. This method could also be used for multiplication of elite cultivars, independently of the growing season.     

Promiscuous arbuscular mycorrhizal symbiosis of yam (Dioscorea spp.), a key staple crop in West Africa

Yam (Dioscorea spp.) is a tuberous staple food crop of major importance in the sub-Saharan savannas of West Africa. Optimal yields commonly are obtained only in the first year following slash-and-burn in the shifting cultivation systems. It appears that the yield decline in subsequent years is not merely caused by soil nutrient depletion but might be due to a loss of the beneficial soil microflora, including arbuscular mycorrhizal fungi (AMF), associated with tropical “tree-aspect” savannas and dry forests that are the natural habitats of the wild relatives of yam. Our objective was to study the AMF communities of natural savannas and adjacent yam fields in the Southern Guinea savanna of Benin. AMF were identified by morphotyping spores in the soil from the field sites and in AMF trap cultures with Sorghum bicolor and yam (Dioscorea rotundata and Dioscorea cayenensis) as bait plants. AMF species richness was higher in the savanna than in the yam-field soils (18–25 vs. 11–16 spp.), but similar for both ecosystems (29–36 spp.) according to the observations in trap cultures. Inoculation of trap cultures with soil sampled during the dry season led to high AMF root colonization, spore production, and species richness (overall 45 spp.) whereas inoculation with wet-season soil was inefficient (two spp. only). The use of D. cayenensis and D. rotundata as baits yielded 28 and 29 AMF species, respectively, and S. bicolor 37 species. AMF root colonization, however, was higher in yam than in sorghum (70–95 vs. 11–20%). After 8 months of trap culturing, the mycorrhizal yam had a higher tuber biomass than the nonmycorrhizal controls. The AMF actually colonizing D. rotundata roots in the field were also studied using a novel field sampling procedure for molecular analyses. Multiple phylotaxa were detected that corresponded with the spore morphotypes observed. It is, therefore, likely that the legacy of indigenous AMF from the natural savanna plays a crucial role for yam productivity, particularly in the low-input traditional farming systems prevailing in West Africa.     

Kusum (Schleichera oleosa (Lour.) Oken): A potential multipurpose tree species,it's future perspective and the way forward

The species Schleichera oleosa (Kusum), being rich in nutritional, medicinal and processing qualities can play a very important role in the livelihood security of the rural communities through enhanced household income, employment generation and environmental protection. People of many states of India are becoming increasingly aware about the potential importance of this species in terms of its ethnobotany and lac production in their livelihood security. Value addition of all the components especially seed oil for biodiesel production, lac production and processing of bark for exploiting their nutritional and medicinal properties is a long-term strategy. There is need of increasing the area and plantation of this valuable species and enhancing their processed products. Moreover, to domesticate this species on farmer's field, there is a need to develop good cultivars. Hence, there is an ample scope in developing propagation methods and suitable good cultivars through nursery management programme. Dissemination of improved production technologies, value addition and marketing strategies regarding Kusum trees and its products to the farmers/entrepreneurs/lac based industries is of utmost importance for promoting it as agribusiness.     

Pyruvate kinase,an enzyme subject to regulation inDioscorea alata

Different species of yam tubers were examined for the presence of pyruvate kinase and phosphatase activities, Pyruvate kinase was purified 25 fold with a yield of 50 %. using ammonium sulphate precipitation and ion exchange chromatography on DEAE-Sephadex. Partially purified enzyme showed normal Michaelis-Menten kinetics. However, pyruvate kinase from crude extract of dormant yam tuber showed slight sigmoid response towards phosphoenol-pyruvate and magnesium and to a certain extent ADP. The enzyme is activated by AMP and inhibited by ATP and citrate in both crude and partially purified preparations. Further studies on the effect of energy charge on the enzyme strongly suggest that pyruvate kinase from D. alata is a regulatory enzyme. No evidence was found for the presence of more than one pyruvate kinase in germinating D. alata tuber. With the exception of D. dumentorum, all the other three species of yams studied contain very little or no detectable phosphatase activity during dormancy. However, phosphatase activity increased during germination in all the species, thus excluding the use of sprouting yam tubers for kinetic study of pyruvate kinase.     

Effect of time of staking on the development of anthracnose disease and yield of water yam (Dioscorea alata)

Unstaked and late staked yam vines were much more affected with anthracnose disease than those staked during the first 63 days of growth in a susceptible cultivar but not in a resistant one. However, yields of both cultivars were much less on unstaked or late staked yams, probably because unstaked vines suffered from leaf shading and high soil temperatures.     

Biological control of postharvest fungal rot of yam (<Emphasis Type="Italic">Dioscorea</Emphasis> spp.) with<Emphasis Type="Italic">Bacillus subtilis</Emphasis>

The potential of isolates of Bacillus subtilis from yam farm soil to control rot of yam in storage barns was investigated. Yam tubers inoculated in vivo with B. subtilis showed no rot while those inoculated with Aspergillus niger, Botryodiploidia theobromae or Penicillium oxalicum showed considerable rot. The set of yams in which B. subtilis and the fungi were simultaneously inoculated produced rot whereas those in which B. subtilis was inoculated a day before the fungi was inoculated were totally reduced or free of rot. Many fewer fungi were isolated from the surface of tubers treated with B. subtilis than from the untreated (control) and there was high recovery of B. subtilis (99–100%) throughout the period of storage. Rot build up was faster in uninoculated control tubers or those inoculated with a spoilage fungus, while those treated with the antagonist were totally reduced or free of rot. The culture filtrate of B. subtilis prevented spore germination in some spoilage fungi. The importance of this study in relation to farmers in developing countries is discussed.