Stratification of δ13C values of leaves in Amazonian rain forests

Summary The contribution of soil respiration to the photosynthesis of the shade flora in the Amazon forest was evaluated by measuring the ¹³C values of leaves collected at different levels in two forest communities. Canopy leaves have an average ¹³C of-30.5 in the podsol forest and-28.7 in the laterite forest. Leaves from plants in the lower forest strata have a significantly lower value of-35.2 in the podsol forest and-34.3 in the laterite forest.Mailing address of the first author: Before May 31, 1980: Department of Biological Sciences, Stanford University, Stanford, California 94305 USA. After May 31: Centro de Ecologia, IVIC Aptdo. 1827. Caracas, Venezuela     

Increase in the CO2 exchange rate of leaves of Ilex rotunda with elevated atmospheric CO2 concentration in an urban canyon

 It was found that the atmospheric carbon dioxide (CO₂) concentration in an urban canyon in Fukuoka city, Japan during August 1997 was about 30 μmol mol⁻¹ higher than that in the suburbs. When fully exposed to sunlight, in situ the rate of photosynthesis in single leaves of Ilex rotunda planted in the urban canyon was higher when the atmospheric CO₂ concentration was elevated. A biochemically based model was able to predict the in situ rate of photosynthesis well. The model also predicted an increase in the daily CO₂ exchange rate for leaves in the urban canyon with an increase in atmospheric CO₂ concentration. However, in situ such an increase in the daily CO₂ exchange rate may be offset by diminished sunlight, a higher air temperature and a lower relative humidity. Thus, the daily CO₂ exchange rate predicted using the model based soleley on the environmental conditions prevailing in the urban canyon was lower than that predicted based only on environmental factors found in the suburbs. Received: 24 October 1997; Received after revision: 25 March 1998; Accepted: 1 June 1998     

δ13C signature of organic carbon in estuarine bottom sediment as an indicator of carbon export from adjacent marshes

The ¹³C signature of organic carbon in estuarine bottom sediment in Louisiana Barataria Basin was used for estimating carbon flux from adjacent marsh. The stable carbon isotope composition of plants, soils and sediments from the basin were determined. The ¹³C content of marsh vegetation ranged from -26.3 to -27.8% for C₃ freshwater vegetation in the upper basin to -13.0 to -13.3% for C₄ vegetation in the lower basin. The ¹³C content of the highly organic marsh soils were similar to ¹³C content of vegetation present. The ¹³C content of organic carbon from bottom sediment of open water bodies ranged from 27.3 in the upper basin (freshwater) to 16.4 in bottom sediment of salt marsh ponds. The¹³C signature of organic carbon in bottom sediment from saline regions corresponded to the size of the body of water. The smaller salt marsh ponds contain sediment with ¹³C values close to that of the C₄ plantSpartina alterniflora. Results suggest that phytoplankton rather thanSpartina alterniffora is the likely organic source in bottom sediment of the larger bay near the coast (e.g. Caminada Bay).     

Local adaptation to soil hypoxia determines the structure of an arbuscular mycorrhizal fungal community in roots from natural CO₂ springs

The processes responsible for producing and maintaining the diversity of natural arbuscular mycorrhizal (AM) fungal communities remain largely unknown. We used natural CO(2) springs (mofettes), which create hypoxic soil environments, to determine whether a long-term, directional, abiotic selection pressure could change AM fungal community structure and drive the selection of particular AM fungal phylotypes. We explored whether those phylotypes that appear exclusively in hypoxic soils are local specialists or widespread generalists able to tolerate a range of soil conditions. AM fungal community composition was characterized by cloning, restriction fragment length polymorphism typing, and the sequencing of small subunit rRNA genes from roots of four plant species growing at high (hypoxic) and low (control) geological CO(2) exposure. We found significant levels of AM fungal community turnover (β diversity) between soil types and the numerical dominance of two AM fungal phylotypes in hypoxic soils. Our results strongly suggest that direct environmental selection acting on AM fungi is a major factor regulating AM fungal communities and their phylogeographic patterns. Consequently, some AM fungi are more strongly associated with local variations in the soil environment than with their host plant's distribution.     

Components of forest soil CO2 efflux estimated from Δ14C values of soil organic matter

Aims

The partitioning of the total soil CO₂ efflux into its two main components: respiration from roots (and root-associated organisms) and microbial respiration (by means of soil organic matter (SOM) and litter decomposition), is a major need in soil carbon dynamics studies in order to understand if a soil is a net sink or source of carbon.

Methods

The heterotrophic component of the CO₂ efflux was estimated for 11 forest sites as the ratio between the carbon stocks of different SOM pools and previously published (Δ¹⁴C derived) turnover times. The autotrophic component, including root and root-associated respiration, was calculated by subtracting the heterotrophic component from total soil chamber measured CO₂ efflux.

Results

Results suggested that, on average, 50.4 % of total soil CO₂ efflux was derived from the respiration of the living roots, 42.4 % from decomposition of the litter layers and less than 10 % from decomposition of belowground SOM.

Conclusions

The Δ¹⁴C method proved to be an efficient tool by which to partition soil CO₂ efflux and quantify the contribution of the different components of soil respiration. However the average calculated heterotrophic respiration was statistically lower compared with two previous studies dealing with soil CO₂ efflux partitioning (one performed in the same study area; the other a meta-analysis of soil respiration partitioning). These differences were probably due to the heterogeneity of the SOM fraction and to a sub-optimal choice of the litter sampling period.     

The 13C/12C isotopic signal of day-respired CO2 in variegated leaves of Pelargonium × hortorum

In leaves, although it is accepted that CO(2) evolved by dark respiration after illumination is naturally (13) C-enriched compared to organic matter or substrate sucrose, much uncertainty remains on whether day respiration produces (13) C-depleted or (13) C-enriched CO(2). Here, we applied equations described previously for mesocosm CO(2) exchange to investigate the carbon isotope composition of CO(2) respired by autotrophic and heterotrophic tissues of Pelargonium × hortorum leaves, taking advantage of leaf variegation. Day-respired CO(2) was slightly (13) C-depleted compared to organic matter both under 21% O(2) and 2% O(2). Furthermore, most, if not all CO(2) molecules evolved in the light came from carbon atoms that had been fixed previously before the experiments, in both variegated and green leaves. We conclude that the usual definition of day respiratory fractionation, that assumes carbon fixed by current net photosynthesis is the respiratory substrate, is not valid in Pelargonium leaves under our conditions. In variegated leaves, total organic matter was slightly (13) C-depleted in white areas and so were most primary metabolites. This small isotopic difference between white and green areas probably came from the small contribution of photosynthetic CO(2) refixation and the specific nitrogen metabolism in white leaf areas.     

How far do experimentally elevated CO2 levels reach into the surrounding? – An example using the 13C label of soil organic matter as an archive

During the last two decades, free air CO₂ enrichment (FACE) studies have been conducted to study the effects of rising atmospheric CO₂ concentrations on ecosystems. The distances between fumigated and control plots differ widely among those projects, but no experimental data are available how far into the surrounding area an effect of CO₂ fumigation can be detected. As the CO₂ gas added to the fumigated plots has a different ¹³C label than ambient atmospheric CO₂, its carbon can be traced into plants and soil organic matter (SOM). The Swiss FACE in Eschikon had been conducted for 10 years on a grassland site. After it had ended, we analysed soil samples from three transects extending from the plots to the surrounding area for their organic carbon (C_org) content and carbon isotopic signature. We determined the maximum spatial extension to which carbon originating from the fumigation was incorporated into SOM. A budget of the fumigation gas‐derived C_org in the upper 10 cm of the soil showed that approximately 50 kg C were stored within the plots, and an additional 31 kg C were stored in their immediate surroundings up to a distance of 9 m from the gas pipes. The presented approach provides us with a method to determine a posteriori the extension to which the CO₂ fumigation treatment contaminated its immediate surroundings during a FACE experiment. In the presented example, this showed that the distances between plots could have been reduced significantly. Although not generalizable to other experimental settings, the finding indicates that optimizing the spatial layout, e.g. by modelling gas dispersion, will be useful when planning future large‐scale FACE infrastructures. Our approach provides a solid basis to test such gas‐dispersion models on existing FACE sites before planning new sites.     

Quantification in soil of Bacillus thuringiensis var. kurstakiδ-endotoxin from transgenic plants

Transgenic plants that produce pesticidal proteins have the potential to release these products into the environment when the plants are incorporated into soil. This could result in novel exposure of soil organisms to these pesticidal proteins. There is a lack of knowledge about the fate and persistence of transgenic pesticidal products in the soil. A model system of transgenic cotton, which produces Bacillus thuringiensis kurstakiδ-endotoxin (Bt toxin), was used to address this issue. Methods were developed to quantify Btk toxin in soil and soil/plant litter by extraction of the Btk toxin with an aqueous buffer and quantification by ELISA. The highest recovery of Btk toxin from soil was obtained with a high salt, high pH buffer. In addition, for certain soil types, addition of a non-ionic detergent, Tween-20, was needed for optimal recovery. Recovery of Btk toxin from soil ranged from 60% for a low clay content, low organic matter soil to 27% for a high clay content, high organic matter soil. The limit of detection of this method is 0.5 ng of extractable toxin per g dry weight soil. The method was shown to be useful in tracking over time the persistence of both purified and transgenic Btk toxin in laboratory experiments.     

δ15N values of macroalgae as an indicator of the potential presence of waste disposal from land-based marine fish farms

The nitrogen isotope ratio (δ¹⁵N) in tissues of native macroalgae was evaluated as a means of indicating the intensity and spatial extent of organic contamination due to disposal of waste from land-based marine fish farms (LBMFFs). Three species of macroalgae from the genus Fucus and the green macroalgae Codium tomentosum were selected for study. The study was carried out at seven flat marine fish farms located in Galicia (NW Spain). Tests were carried out to determine the intra-annual variation in δ¹⁵N values and any differences between selected macroalgae. The δ¹⁵N values enrichment was observed close to the disposal point, and δ¹⁵N values varied more widely throughout the year (±5.57 ‰) at sites affected by the marine fish farm effluent compared to natural conditions (±2 ‰). No significant differences in the isotopic signals were observed in the different species studied (standard major axis). The δ¹⁵N values of macroalgae may be an ideal means of detecting the presence of LBMFFs effluents.     

δ15N as an indicator of N2-fixation by cyanobacterial mats in tropical marshes

Cyanobacterial mats (CBM) are important components of wetland ecosystems in limestone-based regions of the Caribbean. During two sampling periods (July 1999 and January 2000) we measured N₂-fixation in samples from 23 different marshes simultaneously with measurements of relevant environmental factors. Samples were evaluated for abundance of five groups of cyanobacteria: (1) Leptolyngbya, (2) Oscillatoria, (3) Chroococcales, (4) Nostoc-& Stigonematales, and (5) dead sheaths. Differences in nitrogen fixation, expressed as nitrogenase activity in nmol C₂H₄ cm^–2 h^–1, were best explained by the proportion of heterocyst-forming cyanobacteria. The samples were analyzed for the natural abundance of ¹⁵N. ¹⁵N values ranged from –1.99 to 11.44 and were strongly negatively correlated with N₂-fixation. With all data included, ¹⁵N was also strongly correlated with nitrates in water. With the samples from Little Belize (high nitrate content marshes) excluded, the effect of nitrate became insignificant. N₂-fixation predicted from ¹⁵N measured on an independent data set from September 2000 was moderately accurate (r² = 0.68, 0.52 and 0.54 for predictions based on July 1999, January 2000 and combined data sets, respectively). When individual sample sets were divided into two groups with ¹⁵N < 2 and ¹⁵N > 2, the two groups were always highly significantly different in terms of their N₂-fixation. The presented evidence suggests that ¹⁵N can be used as a reliable indicator of N₂-fixation by CBM.     

Templates of food–habitat resources for the organization of soil animals in temperate and tropical forests

The functioning and structure of terrestrial ecosystems are shaped and maintained by plant–decomposer interactions. The food and habitat of animal populations are biogenic and are mainly of plant origin (plant litter) in terrestrial ecosystems. Primary resources of the food-habitat template for the organization of soil animals are provided by the primary production of plants, and are then modified through decomposition processes by microbial populations. In the microbial decomposition system, the efficiency of carbon utilization by microbial decomposers characterizes the decomposition processes between tropical and temperate forest ecosystems. Tropical forests show poor development of soil reservoir systems because of the high efficiency of lignin decomposition by microbial populations. The decomposition processes of leaf litter are described briefly for the understanding of organization of soil animal communities in tropical and temperate forests. A comparison of decomposition processes shows qualitative differences in decomposition between temperate and tropical forests. The composition of functional groups of soil animals is well explained by the decomposition processes in both forests.     

Do anthocyanins function as antioxidants in leaves? Imaging of H2O2 in red and green leaves after mechanical injury

Purified anthocyanin extracts show strong antioxidant properties in vitro, but it is not known whether they can scavenge reactive oxygen in living cells. The oxidative responses in red and green portions of Pseudowintera colorata leaf laminae were compared by the real‐time imaging of H₂O₂ in cells after mechanical injury. An oxidative burst was elicited almost immediately from chloroplasts in the palisade mesophyll, as evidenced using the fluorochromes dichlorofluorescein and scopoletin. H₂O₂ accumulated in green lamina regions for 10 min, and then decreased slowly. By contrast, red regions recovered rapidly, and maintained consistently low levels of H₂O₂. Infusion of cells with N‐acetyl‐l ‐cysteine accelerated the depletion of H₂O₂ from green regions. Wounded leaves ultimately developed a localized necrotic lesion and an intense anthocyanic band. The red regions were enriched in anthocyanins, flavonols, dihydroflavonols, and hydroxycinnamic acids. Only the anthocyanins were suitably located to account for the enhanced rates of H₂O₂ scavenging. The data support the hypothesis that red cells have elevated antioxidant capabilities in vivo.     

α-Glucosidase-inhibitory iminosugars from the leaves of Suregada glomerulata

A water extract of the leaves of Suregada glomerulata (Euphorbiaceae) was found to inhibit rat small intestinal α-glucosidase. An examination of the extract afforded 20 iminosugars including one pyrrolidine and 19 piperidines. The structures of the 10 new compounds (11–20) were determined by NMR, and MS spectroscopic data analyses, and chemical correlations. The novelty of the identified compounds mainly stems from the loss of a hydroxy at C-4 and the presence of an 8-hydroxyoctyl side chain. Nine N-alkyl derivatives including N-methyl (1a, 8a, and 13a), N-butyl (1b, 2b, and 9b) and N,N-dimethyl (1c, 2c, and 9c) were synthesized. The compounds were tested for rat small intestinal α-glucosidase inhibitory activity. In total, 15 compounds, including compounds 11, 12, 15, and 19 and the three derivatives 8a, 9b, and 13a, showed inhibitory activity with IC₅₀ values less than 40 μM. In vivo results showed that total alkaloids of S. glomerulata (10 mg/kg) and four major iminosugars 1, 2, 3, and 9 (10 mg/kg) can lower the postprandial blood glucose level after sucrose and starch load in healthy male ICR mice.     

Is plant genetic control of ectomycorrhizal fungal communities an untapped source of stable soil carbon in managed forests?

Background

Ectomycorrhizal (ECM) fungi provide one of the main pathways for carbon (C) to move from trees into soils, where these fungi make significant contributions to microbial biomass and soil respiration.

Scope

ECM fungal species vary significantly in traits that likely influence C sequestration, such that forest C sequestration potential may be driven in part by the existing community composition of ECM fungi. Moreover, accumulating experimental data show that tree genotypes differ in their compatibility with particular ECM fungal species, i.e. mycorrhizal traits of forest trees are heritable. Those traits are genetically correlated with other traits for which tree breeders commonly select, suggesting that selection for traits of interest, such as disease resistance or growth rate, could lead to indirect selection for or against particular mycorrhizal traits of trees in forest plantations.

Conclusions

Altogether, these observations suggest that selection of particular tree genotypes could alter the community composition of symbiotic ECM fungi in managed forests, with cascading effects on soil functioning and soil C sequestration.     

Root distribution in an Amazonian seasonal forest as derived from δ13C profiles

Carbon isotope ratios of the main stem in trees, saplings, and seedlings were correlated with their main stem diameter in an Amazonian seasonal forest. This correlation became the basis of using carbon isotope ratios of roots from various levels of the soil profile in order to determine root distribution from emergent, canopy and subcanopy trees, saplings and herbaceous understorey plants. It was observed that the distribution of roots in the soil profile is horizontally and vertically heterogeneous. Pockets of roots from saplings or herbaceous understorey plants were found as deep as 4 m and pockets of roots from emergent trees were found as shallow as 1 m depth.     

Can CO2 assimilation in maize leaves be predicted accurately from chlorophyll fluorescence analysis?

Analysis is made of the energetics of CO₂ fixation, the photochemical quantum requirement per CO₂ fixed, and sinks for utilising reductive power in the C₄ plant maize. CO₂ assimilation is the primary sink for energy derived from photochemistry, whereas photorespiration and nitrogen assimilation are relatively small sinks, particularly in developed leaves. Measurement of O₂ exchange by mass spectrometry and CO₂ exchange by infrared gas analysis under varying levels of CO₂ indicate that there is a very close relationship between the true rate of O₂ evolution from PS II and the net rate of CO₂ fixation. Consideration is given to measurements of the quantum yields of PS II ( _{PS II}) from fluorescence analysis and of CO₂ assimilation ( ) in maize over a wide range of conditions. The ratio was found to remain reasonably constant (ca. 12) over a range of physiological conditions in developed leaves, with varying temperature, CO₂ concentrations, light intensities (from 5% to 100% of full sunlight), and following photoinhibition under high light and low temperature. A simple model for predicting CO₂ assimilation from fluorescence parameters is presented and evaluated. It is concluded that under a wide range of conditions fluorescence parameters can be used to predict accurately and rapidly CO₂ assimilation rates in maize.     

δ(13) C of leaf-respired CO(2) reflects intrinsic water-use efficiency in barley

Leaf intrinsic water-use efficiency (WUE), the ratio of photosynthetic rate to stomatal conductance (A/g(s) ), is a key plant trait linking terrestrial carbon and water cycles. A rapid, integrative proxy for A/g(s) is of benefit to crop breeding programmes aiming to improve WUE, but also for ecologists interested in plant carbon-water balance in natural systems. We hypothesize that the carbon isotope composition of leaf-respired CO(2) (δ(13) C(Rl) ), two hours after leaves are transferred to the dark, records photosynthetic carbon isotope discrimination and so provides a proxy for A/g(s) . To test this hypothesis, δ(13) C(Rl) was measured in four barley cultivars grown in the field at two levels of water availability and compared to leaf-level gas exchange (the ratio of leaf intercellular to ambient CO(2) partial pressure, C(i) /C(a) , and A/g(s) ). Leaf-respired CO(2) was more (13) C-depleted in plants grown at higher water availability, varied between days as environmental conditions changed, and was significantly different between cultivars. A strong relationship between δ(13) C(Rl) and δ(13) C of sucrose was observed. δ(13) C(Rl) was converted into apparent photosynthetic discrimination (Δ(13) C(Rl) ) revealing strong relationships between Δ(13) C(Rl) and C(i) /C(a) and A/g(s) during the vegetative stage of growth. We therefore conclude that δ(13) C(Rl) may provide a rapid, integrative proxy for A/g(s) in barley.     

Application of nitrogen in NO 3 − form increases rhizosphere alkalisation in the subsurface soil layers in an acid soil

Leaching of NO ₃ ^? derived from ammoniacal fertilizers in the topsoil and subsequent uptake of NO ₃ ^? by plants from deeper layers may be used as a method of biological amelioration of subsurface soil acidity. This paper reports a glasshouse column experiment testing the above concept. Nitrogen with labelled ¹⁵N was supplied with and without lime to the surface soil (0–10 cm) as urea, (NH₄)₂SO₄ or Ca(NO₃)₂ at a rate equivalent to 120 kg N ha^?1. Soil columns were regularly watered from the top to facilitate NO ₃ ^? leaching. An aluminium-tolerant wheat genotype was grown for 38 days. The application of lime with nitrogen fertilizers increased growth of shoot and roots in all soil layers. The application of Ca(NO₃)₂ resulted in about 66% of recovery efficiency irrespective of whether lime was applied in the surface. This in turn resulted in about 0.2 units increase in rhizosphere pH in the subsurface (10–15 cm) soil layer compared to the same layer of the unlimed control. The supply of urea and (NH₄)₂SO₄ alone or with lime did not increase rhizosphere pH in the subsurface soil layers. Importantly, this study indicates that it is possible to exploit the process of nitrate uptake by wheat to increase pH in acidic subsurface soil.