Protistan diversity in a permanently stratified meromictic lake (Lake Alatsee,SW Germany)

Protists play a crucial role for ecosystem function(ing) and oxygen is one of the strongest barriers against their local dispersal. However, protistan diversity in freshwater habitats with oxygen gradients received very little attention. We applied high‐throughput sequencing of the V9 region (18S rRNA gene) to provide a hitherto unique spatiotemporal analysis of protistan diversity along the oxygen gradient of a freshwater meromictic lake (Lake Alatsee, SW Germany). In the mixolimnion, the communities experienced most seasonal structural changes, with Stramenopiles dominating in autumn and Dinoflagellata in summer. The suboxic interface supported the highest diversity, but only 23 OTUs_95% (mainly Euglenozoa, after quality check and removal of operational taxonomic units (OTUs) with less than three sequences) were exclusively associated with this habitat. Eukaryotic communities in the anoxic monimolimnion showed the most stable seasonal pattern, with Chrysophyta and Bicosoecida being the dominant taxa. Our data pinpoint to the ecological role of the interface as a short‐term ‘meeting point’ for protists, contributing to the coupling of the mixolimnion and the monimolimnion. Our analyses of divergent genetic diversity suggest a high degree of previously undescribed OTUs. Future research will have to reveal if this result actually points to a high number of undescribed species in such freshwater habitats.     

Seasonal and short-term variation in denitrification and anammox at a coastal station on the Gulf of Finland,Baltic Sea

Benthic processes were measured at a coastal deposition area in the northern Baltic Sea, covering all seasons. The N₂ production rates, 90–400 μmol N m⁻² d⁻¹, were highest in autumn-early winter and lowest in spring. Heterotrophic bacterial production peaked unexpectedly late in the year, indicating that in addition to the temperature, the availability of carbon compounds suitable for the heterotrophic bacteria also plays a major role in regulating the denitrification rate. Anaerobic ammonium oxidation (anammox) was measured in spring and autumn and contributed 10% and 15%, respectively, to the total N₂ production. The low percentage did, however, result in a significant error in the total N₂ production rate estimate, calculated using the isotope pairing technique. Anammox must be taken into account in the Gulf of Finland in future sediment nitrogen cycling research. Handling editor: J. Cole     

Abundance of picophytoplankton in the halocline of a meromictic lake, Lake Suigetsu, Japan

Numerous (0.5 to 4.8 × 10⁵ cells/ml), small phytoplankton (smaller than 0.5–1 × 1–2 μm in cell size, picophytoplankton) were distributed in the halocline (depth 2–12 m, 4–14 practical salinity units) of the saline meromictic lake, Lake Suigetsu (35°35′ N, 135°52′ E), located in the central part of the coast of Wakasa Bay along the Japan Sea in Fukui Prefecture, Japan. Vertical distribution of phytoplankton revealed that the maximum number of picophytoplankton was always observed near or a little deeper than the oxic-anoxic boundary layer (depth 5–6 m); they were dominant phytoplankton in the water layer deeper than the oxic-anoxic boundary from July to late September 2005. Spectral analysis of autofluorescence emitted from the particle fractions smaller than 5 μm measured with a spectrofluorometer and from individual cells measured with a microscope photodiode array detector revealed that the major component of picophytoplankton was phycoerythrin-rich, unicellular cyanobacteria (picocyanobacteria). Eukaryotic phytoplankton about 2.5 μm in diameter were also found, but the numbers were low. Fluorescence intensity of chlorophyll a at 685 nm (room temperature) emitted from the particle fractions smaller than 5 μm was increased by the addition of 3-(3,4-dichlorophenyl)-1,1-dimethylurea. These observations indicated that at least some picophytoplankton had a functional photosystem II in the halocline where sulfide, the potential inhibitor of oxygenic photosynthesis, was always present. The large abundance together with their physiological potency suggest that picophytoplankton are one of the important primary producers in the halocline of Lake Suigetsu. Electronic Supplementary Material Supplementary material is available for this article at and is accessible for authorized users.     

Nitrogen dynamics and microbial food web structure during a summer cyanobacterial bloom in a subtropical,shallow, well-mixed,eutrophic lake (Lake Taihu,China)

Nitrogen dynamics and microbial food web structure were characterized in subtropical, eutrophic, large (2,338 km²), shallow (1.9 m mean depth), and polymictic Lake Taihu (China) in Sept–Oct 2002 during a cyanobacterial bloom. Population growth and industrialization are factors in trophic status deterioration in Lake Taihu. Sites for investigation were selected along a transect from the Liangxihe River discharge into Meiliang Bay to the main lake. Water column nitrogen and microbial food web measurements were combined with sediment–water interface incubations to characterize and identify important processes related to system nitrogen dynamics. Results indicate a gradient from strong phosphorus limitation at the river discharge to nitrogen limitation or co-limitation in the main lake. Denitrification in Meiliang Bay may drive main lake nitrogen limitation by removing excess nitrogen before physical transport to the main lake. Five times higher nutrient mineralization rates in the water column versus sediments indicate that sediment nutrient transformations were not as important as water column processes for fueling primary production. However, sediments provide a site for denitrification, which, along with nitrogen fixation and other processes, can determine available nutrient ratios. Dissimilatory nitrate reduction to ammonium (DNRA) was important, relative to denitrification, only at the river discharge site, and nitrogen fixation was observed only in the main lake. Reflecting nitrogen cycling patterns, microbial food web structure shifted from autotrophic (phytoplankton dominated) at the river discharge to heterotrophic (bacteria dominated) in and near the main lake.     

Nitrogen and phosphorus recycling in Lake Sammamish,a temperate mesotrophic lake

This paper presents nitrogen and phosphorus budgets for spring and summer for the trophogenic (0–9 m) and tropholytic (9–27 m) zones of Lake Sammamish. The objective of constructing the budgets is to evaluate the efficiency of nutrient recycling and increase knowledge of the overall nutrient dynamics.The budgets reveal that uptake and solubilization are the dominant fluxes and that nutrient recycling is generally efficient, with the possible exception of early spring during the diatom bloom. This leads to greater reductions in the dissolved N and P pools in spring than summer. Sedimentation is greater in spring because of a pulse immediately following the diatom bloom.Solubilization of particulates is much less in the tropholytic zone than the trophogenic zone. This is due to slower decomposition rates there and to the efficiency of solubilization in the overlying trophogenic zone which results in a relatively small particulate influx. Turnover times for the N and P pools are therefore much faster in the trophogenic zone than in the tropholytic zone. In the trophogenic zone, however, the dissolved N pool turns over much more slowly than the dissolved P pool because of its larger size relative to algal growth requirements.Overall there is a net loss of N and P from the water column in spring primarily due to sedimentation and denitrification whilst in summer there is a small net gain because of sediment release and a slight excess of inflow over outflow.The work was supported by National Science Foundation grants DEB 74-20744, BMS 74-20744 and GB 36810F to the International Biological Program, Western Coniferous Biome (US/IBP) and grant R 008512 from the US Environmental Protection Agency. Contribution no. 373 by the Western Coniferous Biome.The work was supported by National Science Foundation grants DEB 74-20744, BMS 74-20744 and GB 36810F to the International Biological Program, Western Coniferous Biome (US/IBP) and grant R 008512 from the US Environmental Protection Agency. Contribution no. 373 by the Western Coniferous Biome.     

Biodiversity and dynamics of cyanobacterial communities during blooms in temperate lake (Harsha Lake,Ohio, USA)

Cyanobacterial blooms are intensifying global ecological hazards. The fine structure and dynamics of bloom community are critical to understanding bloom development but little understood. Here, the questions whether dominant bloomers have high diversity and whether dominant OTUs (operational taxonomical units) compete with one another were addressed. 16S rRNA gene amplicons from an annual bloom at five locations in Harsha Lake (Ohio, USA) showed cyanobacteria were the dominant phylum, and co-existing major bacterial phyla included Proteobacteria, Bacteroidetes, Actinoacteria, and Verrucomicrobia. On the genus level, the initial dominance by Dolichospermum in June yielded to Planktothrix in July, which were replaced by Microcystis and Cylindrospermopsis in August throughout the bloom. Based on the number of verified unique OTUs (a within-genus biodiversity metric), dominant genera tended to have high within-genus diversity. For example, Dolichospermum had 57 unique OTUs, Planktothrix had 36, Microcystis had 12, and Cylindrospermopsis had 4 unique OTUs. Interestingly, these different OTUs showed different dynamics and association with other OTUs. First, no between-OTU competitions were observed during the bloom cycle, and dominant OTUs were abundant throughout the bloom. Such biodiversity of OTUs and their dynamics were verified in Microcystis aeruginosa with two microcystin synthetase genes (mcyA and mcyG): the relative abundance of both genes varied during the bloom based on quantitative PCR. Two Dolichospermum circinale OTUs and one P. rubescens OTU were most abundant and persistently present throughout the entire bloom. Second, these OTUs differed in the OTUs they were associated with. Third, these OTUs tended to have different levels of association with the environmental factors, even they belonged to the same genera. These findings suggest the structure and dynamics of a cyanobacterial bloom community is complex, with only few OTUs dominating the bloom. Thus, high-resolution molecular characterization will be necessary to understand bloom development.     

Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

The nitrogen cycling of Lake Cadagno was investigated by using a combination of biogeochemical and molecular ecological techniques. In the upper oxic freshwater zone inorganic nitrogen concentrations were low (up to ～3.4 μM nitrate at the base of the oxic zone), while in the lower anoxic zone there were high concentrations of ammonium (up to 40 μM). Between these zones, a narrow zone was characterized by no measurable inorganic nitrogen, but high microbial biomass (up to 4 × 10⁷ cells ml^?1). Incubation experiments with ¹⁵N‐nitrite revealed nitrogen loss occurring in the chemocline through denitrification (～3 nM N h^?1). At the same depth, incubations experiments with ¹⁵N₂‐ and ¹³C_DIC‐labelled bicarbonate, indicated substantial N₂ fixation (31.7–42.1 pM h^?1) and inorganic carbon assimilation (40–85 nM h^?1). Catalysed reporter deposition fluorescence in situ hybridization (CARD‐FISH) and sequencing of 16S rRNA genes showed that the microbial community at the chemocline was dominated by the phototrophic green sulfur bacterium Chlorobium clathratiforme. Phylogenetic analyses of the nifH genes expressed as mRNA revealed a high diversity of N₂ fixers, with the highest expression levels right at the chemocline. The majority of N₂ fixers were related to Chlorobium tepidum/C. phaeobacteroides. By using Halogen In Situ Hybridization‐Secondary Ion Mass Spectroscopy (HISH‐SIMS), we could for the first time directly link Chlorobium to N₂ fixation in the environment. Moreover, our results show that N₂ fixation could partly compensate for the N loss and that both processes occur at the same locale at the same time as suggested for the ancient Ocean.     

Geomicrobiology of the carbon,nitrogen and sulphur cycles in Powell Lake: a permanently stratified water column containing ancient seawater

We present the first geomicrobiological characterization of the meromictic water column of Powell Lake (British Columbia, Canada), a former fjord, which has been stably stratified since the last glacial period. Its deepest layers (300–350 m) retain isolated, relict seawater from that period. Fine-scale vertical profiling of the water chemistry and microbial communities allowed subdivision of the water column into distinct geomicrobiological zones. These zones were further characterized by phylogenetic and functional marker genes from amplicon and shotgun metagenome sequencing. Binning of metagenomic reads allowed the linkage of function to specific taxonomic groups. Statistical analyses (analysis of similarities, Bray–Curtis similarity) confirmed that the microbial community structure followed closely the geochemical zonation. Yet, our characterization of the genetic potential relevant to carbon, nitrogen and sulphur cycling of each zone revealed unexpected features, including potential for facultative anaerobic methylotrophy, nitrogen fixation despite high ammonium concentrations and potential micro-aerobic nitrifiers within the chemocline. At the oxic–suboxic interface, facultative anaerobic potential was found in the widespread freshwater lineage acI (Actinobacteria), suggesting intriguing ecophysiological similarities to the marine SAR11. Evolutionary divergent lineages among diverse phyla were identified in the ancient seawater zone and may indicate novel adaptations to this unusual environment.     

Dissimilatory microbial sulfur and methane metabolism in the water column of a shallow meromictic lake

Lake Harutori is a brackish meromictic lake with a steep physicochemical gradient in shallow water. Anoxic water below the chemocline has been characterized by high concentrations of sulfide (>10 mM) and methane (>1.5 mM). Previously, we reported that uncultured bacteria in the SEEP-SRB1 group were major sulfate reducers in the lake [21], but knowledge of sulfur oxidation and methane metabolism was scarce. In this current study, the Lake Harutori microbial community structure in the mixolimnion (at depths of 1.5 m and 3.0 m), upper chemocline (3.5 m), and monimolimnion (4.5 m) was further investigated by 16S rRNA gene amplicon sequencing and catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH). Reads of type I and II methanotrophs were retrieved mainly from 3.5 m and above. Methanotrophic bacteria detected by CARD-FISH accounted for 3.1% of DAPI-stained cells at 3.5 m. Detection frequencies of reads affiliated with the genera Sulfurimonas and Thiomicrorhabdus, which are known to comprise sulfur oxidizers, were relatively high at 3.5 m. Methanogenic archaeal reads were retrieved from the monimolimnion and they affiliated with the genus Methanosaeta. CARD-FISH counts indicated that the cells of Methanosaeta/Methanosarcina/Methanomicrobiales accounted for up to 0.8% of the DAPI-stained cells in the monimolimnion. On the other hand, many of the reads retrieved primarily from the monimolimnion were affiliated with phylogenetically novel uncultured groups.     

肇庆星湖水质现状与变化趋势

在2002年对星湖四个子湖进行采样调查,运用相关加权综合营养状态指数来评价水质营养状态,结果富营养化程度由高到低依次为波海湖、中心湖、青莲湖、仙女湖。与1996～1997年的调查结果比较,波海湖仍处于富营养化状态,中心湖富营养化程度加剧,其富营养化程度超过了青莲湖和仙女湖,由中营养型过渡到了中富营养型。营养盐与叶绿素a的相关分析表明,硝态氮与叶绿素有正相关关系,与磷盐没有明显相关性,说明了硝态氮是星湖初级生产力的主要限制因子之一,而磷的含量充足,对初级生产力没有明显的限制作用。与1996～1997年比较,星湖总氮负荷增加46.5%,总磷负荷下降40.8%,而叶绿素a由6.0mg·m^-3升高到16.9mg·m^-3,说明星湖的富营养化仍在进一步加剧。     

Distribution and population dynamics of ostracodes (Crustacea,Ostracoda) in a karstic lake: Lake Banyoles (Catalonia,Spain)

Qualitative and quantitative benthic samples were collected monthly between December 1986 and December 1987 from several stations at various depths and basins in the karstic Lake Banyoles (Catalonia, Spain), to study the spatial distribution and seasonality of ostracodes. A total of eight ostracode species were found in the lake. Of these, Candona neglecta Sars, Isocypris beauchampi Paris and Cypria ophtalmica Jurine were the most common ostracodes at all depth stations. Darwinula stevensoni Brady & Robertson, Ilyocypris species (I. bradyi Sars and I. gibba (Ramdohr)), Cyprideis torosa (Jones) and Cyclocypris ovum Jurine, on the other hand, were confined to sublittoral and littoral areas of the lake.Substrate and organic matter content appeared to be relevant factors determining the distribution of ostracode species at the different stations. The highest abundance of ostracodes were in the sublittoral (Basin IV–7 m and Basin I-5 m) where the substrate was coarse and sediment had a high organic matter content (>35% LOI). Low oxygen levels in the hypolimnetic waters (i.e. < 1 mg l^–1) may explain the absence of ostracodes at deeper zones in stations where the anoxic period lasts more than four months. On the other hand, low temperatures seem to favour the development of C. neglecta and D. stevensoni, while with higher temperatures I. beauchampi, C. torosa and C. ovum increased their abundances. However, no clear pattern can be observed, so ostracode species in Lake Banyoles, apparently, have non-seasonal life histories.     

Spectral gradients of downwelling light in a fluvial lake (Lake Saint-Pierre, St-Lawrence River)

Large fluvial lakes are understudied with respect to their underwaterlight climates. Fluvial lakes pose unique challenges for photobiologistsinterested in the interactions amongst light climate, nutrients and microbialcommunity structure and biodiversity. This is because fluvial lakes are typifiedby highly dynamic flow regimes often incorporating different inflows anddischarges each characterized by their own unique physico-chemical composition.These compositional characteristics include the concentrations of chromophoricdissolved organic matter (CDOM), suspended solids, and pigments such aschlorophyll. Together these factors contribute to the distribution andcomposition of the water masses that make up fluvial lakes. These water masses,in turn, flow over lakebeds that are typically complex in their morphometry andfeature extensive macrophyte beds, further enhancing the habitat heterogeneityof these ecosystems. We here report on the spectral attenuation of ultravioletradiation (UVR = 280–400 nm) and photosyntheticallyactive radiation (PAR = 400–700 nm) in the three mainwater masses of Lake Saint-Pierre and evaluate the relative contribution ofCDOM, and particulate organic material to UVR attenuation. We demonstrate thatUVR penetrates 18 to 30% of the water column (1% penetration depth) in the LakeSaint-Pierre ecosystem, and show how the underwater spectral UVR varies withinthe three water masses.     

Composition,density and feeding of crustacean zooplankton community in a shallow,temperate lake (Lake Balaton,Hungary)

Composition density and filtering rates of crustacean zooplankton were studied in the open water and among the macrophytes of the oligo-mesotrophic part of Lake Balaton from 1981 to 1983. From the individual filtering rates of the different populations and the densities community grazing rates were derived.Copepoda made up 79–90% of crustacean plankton community in the open lake and 95–97% of it in littoral zone. Among them the nauplii dominated. At the end of summer 1982, when Anabaenopsis was in bloom, the filter-feeding species (Eudiaptomus, Daphnia) practically disappeared, being replaced by cyclopoids. Daphnia had the highest filtering rates followed by those of Eudiaptomus and Diaphanosoma. Among copepods, the filtering rates in decreasing order were: ovigerous > all adults > copepodites > nauplii. > . The filtering rates of the different species varied both seasonally as well as from year to year. In 1983, when the concentration of organic seston decreased, filtering rate increased compared with those in the earlier years. During the water bloom in 1982, the rates decreased by 70% on the average.The community grazing rate was very low (3% per day) in the open lake and among macrophytes, both in 1981 and 1982; also the share of crustacean zooplankton in grazing was very low. In 1983, together with the improving of water quality, the community grazing rate increased 4-fold. In 1981 and 1983 the rates were influenced by water temperature but in 1982 by seston concentration.     

Some physical and biological factors affecting a spring-summer phytoplankton dynamics in a shallow,temperate lake of South Andes (Argentina)

The phytoplankton dynamics of Laguna Ezquerra (Río Negro, Argentina) was analysed on the basis of high frequency sampling, each 3–4 days during a spring-summer period, in relation to physical factors and to the zooplankton community structure. The phytoplankton biomass presented a marked seasonality, accompanied by similar seasonal patterns in temperature and zooplankton dynamics. Community variations were reflected in the diversity, dominance and equitability values. The greatest change was associated during a short flooding period produced in late spring. The wind exposure was irregular during the whole study period, and was assumed to be a factor of stress for the phytoplankton growth. During spring and early summer, the phytoplankton community was dominated by nanoplanktonic forms like Rhodomonas lacustris, and the large sized Asterionella formosa presented an exponential increment at late summer. This Asterionella growth permitted to affirm that the community evolved towards plagioclimatic stages, attending the highly disturbed conditions of the shallow and wind exposed environment.     

The effect of wave-reduction engineering on sediment resuspension in a large, shallow, eutrophic lake (Lake Taihu)

Frequent resuspension of sediments is recognized as an important process in large shallow lakes, impeding the recovery of eutrophic lakes. A large-scale project, including a wave barrier (3.3 km long) and a soft enclosure, was implemented to reduce wave energy and sediment resuspension in Lake Taihu, eastern China. The effects of the wave-reduction engineering on sediment resuspension and internal nutrient loading were investigated. Results showed that sediment resuspension rates as well as suspended solids (SS) in the areas protected by the wave barrier and the soft enclosure were significantly lower than in the unprotected areas. There was a positive relationship between total phosphorus (TP) and SS; thus internal loading of phosphorus was significantly reduced by the wave-reduction structure. High nutrient levels and phytoplankton biomass persisted during the experiment period, suggesting that additional measures, such as re-establishment of the macrophyte community, must be included to help restore the water quality in such a large, shallow and eutrophic lake.     

Abundance and production of bacteria, and relationship to phytoplankton production, in a large tropical lake (Lake Tanganyika)

1. Abundance and bacterial production (BP) of heterotrophic bacteria (HBact) were measured in the north and south basins of Lake Tanganyika, East Africa, during seasonal sampling series between 2002 and 2007. The major objective of the study was to assess whether BP can supplement phytoplankton particulate primary production (particulate PP) in the pelagic waters, and whether BP and particulate PP are related in this large lake. HBact were enumerated in the 0–100 m surface layer by epifluorescence microscopy and flow cytometry; BP was quantified using ³H‐thymidine incorporation, usually in three mixolimnion layers (0–40, 40–60 and 60–100 m). 2. Flow cytometry allowed three subpopulations to be distinguished: low nucleic acid content bacteria (LNA), high nucleic acid content bacteria (HNA) and Synechococcus‐like picocyanobacteria (PCya). The proportion of HNA was on average 67% of total bacterial abundance, and tended to increase with depth. HBact abundance was between 1.2 × 10⁵ and 4.8 × 10⁶ cells mL⁻¹, and was maximal in the 0–40 m layer (i.e. roughly, the euphotic layer). Using a single conversion factor of 15 fg C cell⁻¹, estimated from biovolume measurements, average HBact biomass (integrated over a 100‐m water column depth) was 1.89 ± 1.05 g C m⁻². 3. Significant differences in BP appeared between seasons, especially in the south basin. The range of BP integrated over the 0–100 m layer was 93–735 mg C m⁻² day⁻¹, and overlapped with the range of particulate PP (150–1687 mg C m⁻² day⁻¹) measured in the same period of time at the same sites. 4. Depth‐integrated BP was significantly correlated to particulate PP and chlorophyll‐a, and BP in the euphotic layer was on average 25% of PP. 5. These results suggest that HBact contribute substantially to the particulate organic carbon available to consumers in Lake Tanganyika, and that BP may be sustained by phytoplankton‐derived organic carbon in the pelagic waters.     

Spatial and temporal dynamics of the steady-state phytoplankton assemblages in a temperate shallow hypertrophic lake (Lake Manyas,Turkey)

Spatial and temporal dynamics of phytoplankton biomass and species composition in the shallow hypertrophic Lake Manyas, Turkey, were studied biweekly from January 2003 to December 2004 to determine steady-state phases in phytoplankton assemblages. Steady-state phases were defined when one, two or three coexisting species contributed to at least 80% of the standing biomass for at least 2 weeks and during that time the total biomass did not change significantly. Ten steady-state phases were identified throughout the study peiod. During those periods, Achnanthes microcephala (Kützing) Cleve twice dominated the phytoplankton biomass alone and contributed to more than 50% of the total biomass in seven phases. Microcystis aeruginosa (Kützing) Kützing, Anabaena spiroides Klebahn, Cyclotella stylorum Brightwell, Pediastrum boryanum (Turpin) Meneghini and Phacus pusillus Lemmermann were also represented once in steady-state phytoplankton assemblages. A. microcephala was dominant usually during cold periods of the year, while M. aeruginosa and A. spiroides were usually dominant in warm seasons. The total number of species showed a clear decrease during steady-state phases at all stations. All stations were significantly different in terms of the measured physical and chemical parameters (P < 0.05) and phytoplankton biomass (F = 117, P < 0.05).