Sheep grazing and rodent populations: evidence of negative interactions from a landscape scale experiment

Inter-specific competition, facilitation and predation influence herbivore assemblages, but no study has experimentally explored the interactions between large ungulates and small rodents. In a fully replicated, landscape scale experiment, we manipulated densities of domestic sheep in mountain pastures in Norway. We then determined population growth and densities of rodents by live trapping in each of the areas with different sheep densities. We found that the (summer) population growth rate and autumn density of the field vole (Microtus agrestis) was lower at high sheep density. This provides the first experimental evidence of negative interactions between an ungulate and small rodent species. There was no effect on the bank vole (Clethrionomys glareolus), whose diet differs from sheep. Sheep density, therefore, potentially alters the pattern of inter-specific population synchrony amongst voles. Our study shows that negative interactions between large ungulates and small rodents may be species-specific and negative population consequences for the rodent population appear above threshold ungulate densities.Electronic supplementary material is available for this article at     

Conservation biological control and enemy diversity on a landscape scale

Conservation biological control in agroecosystems requires a landscape management perspective, because most arthropod species experience their habitat at spatial scales beyond the plot level, and there is spillover of natural enemies across the crop–noncrop interface. The species pool in the surrounding landscape and the distance of crop from natural habitat are important for the conservation of enemy diversity and, in particular, the conservation of poorly-dispersing and specialized enemies. Hence, structurally complex landscapes with high habitat connectivity may enhance the probability of pest regulation. In contrast, generalist and highly vagile enemies may even profit from the high primary productivity of crops at a landscape scale and their abundance may partly compensate for losses in enemy diversity. Conservation biological control also needs a multitrophic perspective. For example, entomopathogenic fungi, plant pathogens and endophytes as well as below- and above-ground microorganisms are known to influence pest-enemy interactions in ways that vary across spatiotemporal scales. Enemy distribution in agricultural landscapes is determined by beta diversity among patches. The diversity needed for conservation biological control may occur where patch heterogeneity at larger spatial scales is high. However, enemy communities in managed systems are more similar across space and time than those in natural systems, emphasizing the importance of natural habitat for a spillover of diverse enemies. According to the insurance hypothesis, species richness can buffer against spatiotemporal disturbances, thereby insuring functioning in changing environments. Seemingly redundant enemy species may become important under global change. Complex landscapes characterized by highly connected crop–noncrop mosaics may be best for long-term conservation biological control and sustainable crop production, but experimental evidence for detailed recommendations to design the composition and configuration of agricultural landscapes that maintain a diversity of generalist and specialist natural enemies is still needed.     

Importance of patch scale vs landscape scale on selected forest birds

The management and protection of natural areas have primarily occurred in isolation from surrounding land management. The structure of surrounding land cover, however, may be important to the abundance and reproductive success of birds within a habitat patch. We investigated the relative importance of forest patch area, within patch habitat and surrounding landscape forest cover on the abundance of three Neotropical migrant bird species thought to be area-sensitive (ovenbird [ Seiurus aurocapillus ], wood thrush [ Hylocichla mustelina ] and red-eyed vireo [ Vireo olivaceus ]), and on pairing success of the ovenbird. We selected 31 isolated forest patches of differing sizes, and three 80-ha plots in continuous forest each centered within non-overlapping 200-ha landscapes, such that patch area and landscape forest cover were uncorrelated among landscapes. Each study plot was surveyed to estimate abundances of territorial males and ovenbird pairing success. Landscape forest cover ( p <0.05) explained the most variation in ovenbird abundance, while percent deciduous forest cover within patches ( p <0.05) and patch size ( p <0.05) explained the most variation in red-eyed vireo and wood thrush abundance, respectively. Patch size was a significant ( p <0.05) predictor of abundance for all three study species; however, density for all species decreased significantly ( p <0.05) with patch size. Ovenbird pairing success was higher in continuous forest plots than in forest patches ( p =0.018). This study's findings suggest that the relative importance of within patch characteristics, patch size and landscape forest cover varies for different bird species, and that conservation efforts would benefit from the inclusion of all three factors.     

Pollination, seed set and seed predation on a landscape scale

We analysed the combined effects of pollination and seed predation on seed set of Centaurea jacea in 15 landscapes differing in structural complexity. In the centre of each landscape, a patch of Centaurea plants was established for standardized measurements of flower visitation, seed predation and seed set. Both the number of flower-visiting bees and the proportion of flower heads damaged by seed predators increased with landscape complexity, which was measured as the proportion of semi-natural habitats. The mean number of seeds per flower head did not increase with the proportion of semi-natural habitats, presumably because of the counterbalancing effects of pollination and seed predation. For a subset of undamaged flower heads, the number of seeds per flower head was positively correlated with the number of flower visits. Further reasons for the unexpected failure to detect a correlation between landscape complexity and seed set appeared to be changes in flower-visitor behaviour and the contrasting responses of honeybees and wild bees to habitat context. Landscape analyses at eight spatial scales (radius of landscape sectors, 250-3000 m) showed that different groups perceived the landscape at different spatial scales. Changes in pollinator numbers could be explained only at small scales (up to 1000 m), while the seed predators also responded to large scales (up to 2500 m).     

Microarrays to characterize protein interactions on a whole-proteome scale

Protein microarrays contain a defined set of proteins spotted and analyzed at high density, and can be generally classified into two categories; protein profiling arrays and functional protein arrays. Functional protein arrays can be made up of any type of protein, and therefore have a diverse set of useful applications. Advantages of these arrays include low reagent consumption, rapid interpretation of results, and the ability to easily control experimental conditions. The ultimate form of a functional protein array consists of all of the proteins encoded by the genome of an organism; such an array would be the whole proteome equivalent of the whole genome DNA arrays that are now available. While proteome microarrays may not have reached the stage of maturity of DNA microarrays, recent developments have shown that many of the barriers holding back the technology can be overcome. Arrays of this type have already been used to rapidly screen large numbers of proteins simultaneously for biochemical activities, protein-protein interactions, protein-lipid interactions, protein-nucleic acid interactions, and protein-small molecule interactions. Eventually, functional protein arrays will be used to facilitate various steps in the drug discovery and early development processes that are currently bottlenecks in the drug development continuum.     

Restocking a keystone species in a biodiversity hotspot: Recovering the European rabbit on a landscape scale

Rabbit populations in Iberia remain at low densities in several areas in which their endangered predators still coexist, and the recovery of these populations is therefore urgent if the integrity of Iberian Mediterranean ecosystems is to be maintained. The enhancement of wild rabbit populations has been attempted through the use of in situ extensive rabbit captive breeding enclosures (restocking plots), which reduce mortality caused by terrestrial predators and dispersal movements and permit the breeding of young individuals which can then naturally disperse to settle in the surrounding areas. However, their effectiveness, the role of its size, the optimal habitat management that should be promoted around them and the habitat features remains uncertain. Here, we show results from a four year study of an ambitious rabbit restocking plan on a landscape scale. We measured rabbit abundance in a vast area in which thirty-two restocking plots were built to create an initial rabbit population for further dispersion, in addition to an intensive habitat management program. We also compared rabbit abundance between managed and unmanaged UTM cells of 2.5 km × 2.5 km. Our results showed that rabbit abundance was three times higher in managed cells, but four years after restocking, rabbit abundances had only reached the threshold needed to support stable Iberian lynx presence (at least 10 latrines per km^?1) in 9 of the 23 managed cells. Rabbit abundance was strongly affected by habitat treatment and scrub coverage. The increase of shelter was useful in low cover areas but ineligible in places with high scrub cover, where the increase of refuge plus scrub clearing to create pastures improve rabbit abundance more effectively. In the light of our results, restocking plots should be built only in places with suitable habitat, whereas pastures should be created in dense scrublands and refuge in low cover areas.     

Energetics-based discovery of protein-ligand interactions on a proteomic scale

Biochemical functions of proteins in cells frequently involve interactions with various ligands. Proteomic methods for the identification of proteins that interact with specific ligands such as metabolites, signaling molecules, and drugs are valuable in investigating the regulatory mechanisms of cellular metabolism, annotating proteins with unknown functions, and elucidating pharmacological mechanisms. Here we report an energetics-based target identification method in which target proteins in a cell lysate are identified by exploiting the effect of ligand binding on their stabilities. Urea-induced unfolding of proteins in cell lysates is probed by a short pulse of proteolysis, and the effect of a ligand on the amount of folded protein remaining is monitored on a proteomic scale. As proof of principle, we identified proteins that interact with ATP in the Escherichia coli proteome. Literature and database mining confirmed that a majority of the identified proteins are indeed ATP-binding proteins. Four identified proteins that were previously not known to interact with ATP were cloned and expressed to validate the result. Except for one protein, the effects of ATP on urea-induced unfolding were confirmed. Analyses of the protein sequences and structure models were also employed to predict potential ATP binding sites in the identified proteins. Our results demonstrate that this energetics-based target identification approach is a facile method to identify proteins that interact with specific ligands on a proteomic scale.     

Urbanization and a threatened freshwater mussel: evidence from landscape scale studies

The inflated heelsplitter, Potamilus inflatus, a federally listed freshwater bivalve, has been eradicated from northern portions of its range in the Amite River in Louisiana, USA. We hypothesized that the remaining populations of Potamilus inflatus in the southern part of the Amite River are being affected by increased urbanization of the watershed caused by growth of the surrounding Baton Rouge metropolitan area. Comparison of catch per unit effort in 2007 with a study conducted in 1994 indicated a significant drop in CPUE from 1.76 heelsplitters per site to 0.87. The size distribution of heelsplitters also had decreased in mean shell length from 116 to 97 mm, owing either to dislodgement of larger individuals in spates, or die-offs of larger males. Logistic regression suggested that site variables like substrate type and current velocity were not as important as landscape scale variables in predicting heelsplitter presence at a site. Heelsplitter presence was positively related to the amount of wetland riparian forest, and negatively related to the amount of residential development at the reach (1 km upstream) scale. Our results are significant because we show (1) that statistical models of GIS-based land use can predict the distribution of threatened mussel species, and that (2) conservation of endangered freshwater mussels will require more emphasis on the integrity of the riparian corridor.     

基于服务功能的昆虫生态调控理论

鉴于昆虫在植物传粉授精、害虫生物控制、土壤有机物分解中提供多种生态系统服务功能,本文在害虫生态调控、区域性害虫生态调控与生境管理的基础上,进一步提出基于多种生态服务功能的农田景观昆虫生态调控理论、方法与实践。认为:昆虫管理不仅仅是害虫的管理,还应包括有益昆虫(如传粉昆虫、天敌昆虫、分解昆虫)的管理,这种管理应从单一农田生态系统扩展到农田景观生态系统,充分考虑农田景观中昆虫的传粉功能、生物控害功能和分解功能,通过对功能植物、作物与非作物生境的空间布局以及时间序列上的生态设计,从空间上明确昆虫(包括害虫、天敌、传粉昆虫、分解昆虫)在不同生境中的转移扩散动态,从时间上掌握昆虫在不同寄主植物与非作物生境上的演替过程,从技术上着重发挥有利于昆虫的传粉功能、生物控害功能和分解功能的综合措施,在研究方法上突出使用稳定同位素、生态能量学、化学生态学等定量分析手段,研究景观区域内中"植物-昆虫"互作过程及其生态调控措施的作用,寻求不同时空条件下控害保益的关键措施,设计和组装出维持多功能的农田景观昆虫生态调控技术体系,创造有利于天敌控害、蜜蜂传粉、土壤分解的环境条件,以发挥昆虫类群在农田景观中最大的生态服务功能。     

Correlations of liverwort species on an intermediate landscape scale

Abstract. Floristic data on the occurrence of Hepaticae at 939 localities of 10² - 10³ m diameter in the Nizky; Jesenik Mts. (area 3624 km²) were subjected to TWIN-SPAN classification. The results were interpreted in terms of the site conditions at each locality. Groups of localities showed marked differences in distribution within the areas, mainly in relation to altitude and substrate. The grouping of species partly corresponded to their sociological behaviour (i. e. their distribution on a smaller spatial scale). Joint occurrences of species of different sociological groups indicate the presence of habitat complexes whichbecome apparent on the larger spatial scale. The use of such data in landscape ecology is discussed.     

Coupled ecological-social dynamics in a forested landscape: spatial interactions and information flow

We develop an agent-based model for forest harvesting to study how interactions between neighboring land parcels and the degree of information flow among landowners influence harvesting patterns. We assume a forest is composed of a number of land parcels that are individually managed. Each parcel is either mature forested, just-harvested, or immature forested. The state transition of each parcel is described by a Markov chain that incorporates the successional dynamics of the forest ecosystem and landowners' decisions about harvesting. Landowners decide to cut trees based on the expected discounted utility of forested vs. harvested land. One landowner's decision to cut trees is assumed to cause the degradation of ecosystem services on the downstream forested parcels. We investigated two different scenarios: in a strongly-connected society, landowners are familiar with each other and have full information regarding the behavior of other landowners. In a weakly-connected society, landowners do not communicate and therefore need to make subjective predictions about the behavior of others without adequate information. Regardless of the type of society, we observed that the spatial interaction between management units caused a chain reaction of tree harvesting in the neighborhood even when healthy forested land provided greater utility than harvested land. The harvest rate was higher in a weakly-connected society than that in a strongly-connected society. If landowners employed a long-term perspective, the harvest rate declined, and a more robust forested landscape emerged. Our results highlight the importance of institutional arrangements that encourage a long-term perspective and increased information flow among landowners in order to achieve successful forest management.     

Effect of land-use heterogeneity on carabid communities at the landscape scale

Carabid beetle assemblages were studied to assess how diversity and community structure varied along a gradient of land-use. This gradient was composed of six 1 km² quadrats with an increasing proportion of agricultural land reflecting the anthropogenic fragmentation and intensification of landscapes. Carabid species richness and abundance was predicted to peak in the most heterogeneous landscape, in accord with the intermediate disturbance hypothesis (IDH), and then decline as agricultural intensification increased. It was also predicted that the different landscapes would support beetle communities distinct from each other. The IDH was unsupported-in both years of this study carabid species richness and abundance was greatest in the most intensively managed, agricultural sites. Detrended correspondence analysis revealed a clear separation in beetle community structure between forested and open habitats and between different forest types. Canonical correspondence analysis revealed a significant correlation between beetle community structure and the environment, showing distinct beetle assemblages to be significantly associated with specific edaphic and botanical features of the land-use gradient. This study adds to increasing evidence that landscape-scale patterns in land-use significantly affect beetle community structure producing distinct assemblages.     

The legacy of logging--estimating arboreal lichen occurrence in a boreal multiple-use landscape on a two century scale

In northern Sweden, the availability of arboreal lichens (Bryoria fuscescens, Alectoria sarmentosa) as winter grazing resources is an important element in reindeer husbandry. With the industrialization of forestry, forests rich in arboreal lichens have diminished considerably. Here, we analyze how forestry has impacted lichen availability from the 1920's to the present day and model its future development assuming different forest management scenarios.We recorded the current occurrence of B. fuscescens in 144 sampling plots, stratified by forest age class and dominant tree species in a 26,600 ha boreal forest landscape that is used for both reindeer herding and forestry. Lichen abundance was visually estimated in four classes: none, sparse, moderate and abundant. A binary logistic model using forest age as the independent variable was developed to predict the probability of lichens being present. Using this model, we found that lichens were present in stands that are at least 63 years old. Because of the relative paucity of stands rich in arboreal lichens, it was not possible to reliably determine how age affects the variation in abundance of older forest stands. The historical development of forests where arboreal lichens could potentially occur was studied using historic forestry records dating back 80 years. Between 1926 and the present day, forestry has reduced the cover of forests older than 60 years from 84% to 34%. The likely future spatial coverage of these stands over the next 120 years was estimated for two different management scenarios and an unmanaged reference scenario, using the Heureka strategic planning program. Under both the "business as usual" scenario and that involving more intensive forestry, continued decreases in lichen availability are projected. Our results emphasize the importance of alternative forestry practices, such as prolonged rotation periods, to increase the availability of arboreal lichens as a grazing resource for reindeer.     

Toward a landscape approach in seagrass beds: using macroalgal accumulation to address questions of scale

An experimental investigation of drift macroalgal accumulation in seagrass beds was conducted to determine if the relationship between passively dispersed plant structure and the spatial arrangement of rooted macrophytes differed when examined across two spatial scales. Experiments were performed from December 1992 to April 1993 at four different sites in Tampa Bay, Florida, utilizing artificial seagrass units (ASUs) of uniform shoot length and density but with different areal dimensions [1 m² (S) versus 4 m² (L)]. Drift macroalgae were also collected from 1 m×1 m plots of natural seagrass at each of the experimental sites from November 1990 to May 1992 to determine the relationship between macroalgal abundance and structural characteristics of natural seagrass. Disproportionately higher amounts of macroalgae were captured in L compared to S plots suggesting that macroalgal accumulation does not scale up directly with the areal dimensions of ASU patches. Higher amounts of algae recovered in L plots is in accordance with patterns expected if algae accumulate in zones of attenuated water flow. Neither seagrass shoot density nor blade length could adequately describe the patterns of algal accumulation. These combined results suggest that explanations for trapping/retention of passively dispersed particles should extend beyond traditional measures of vegetation complexity.