Substrate and light dependent fixation of molecular nitrogen in Rhodospirillum rubrum

Summary Whole cells of Rhodospirillum rubrum were cultivated in a malate medium lacking bound nitrogen under N₂ and tested for their nitrogenase activity by measuring the disappearance of nitrogen manometrically.Several experimental conditions were relevant in maintaining consistently high activities. These included: a) light intensity, b) substrate concentration, c) concentration of the cell suspension, d) buffer molarity, pH, and e) temperature.Under our optimal experimental conditions about 6 moles of either l-malate, fumarate, succinate or 10 moles of pyruvate were consumed per 1 mole of molecular nitrogen.The amount of gas taken up by the cells agreed quantitatively with the increase of bound nitrogen found in the cells by microkjeldahl determinations.The fixation of molecular nitrogen is suppresed quickly and specifically by very small amounts of ammonia (<5 g ammonia N/ml). The duration of this inhibition depends on the amount of ammonia available to the cells.     

Interrelationship of nitrogen fixation,hydrogen evolution and photoreduction in Rhodospirillum rubrum

Summary Rhodospirillum rubrum was grown: 1. photoheterotrophically on a medium containing dl-malate as the carbon source and ammonium chloride as the nitrogen source (medium No. 1); 2. phototrophically with N₂ and dl-malate (medium No. 2); 3. photoautotrophically with N₂, CO₂ and H₂ (medium No. 3).Resting cells derived from these cultures were tested for their ability to photoreduce CO₂, evolve H₂ and fix N₂. Only cells which were grown in medium No. 2 were able to perform all three gas exchanges. The activity pattern of gas exchanges altered in a characteristic way during the growth cycle of the bacterial culture. Cells newly transferred to medium No. 2 showed an enormous increase in the rate of H₂ evolution, which dropped sharply when all l-malate had been used up. The rate of photoreduction of CO₂ increased steadily and reached a maximum level after 120 h. The nitrogen fixing activity remained constant during the whole growth cycle.The yields of H₂ produced per mole of l-malate added were measured as a function of cell age. Only very young cultures gave appreciable yields, which dropped gradually with increasing age.The function of the carbon source is discussed as a regulating factor for photoreduction and hydrogen evolution.     

EPR studies of a nonphotosynthetic mutant of Rhodospirillum rubrum

The EPR properties of P₈₇₀ and the primary electron acceptor in chromatophores from R. rubrum and a nonphotosynthetic mutant have been compared. Using steady-state illumination in the presence of various electron donors, it has been found that the primary acceptor in the mutant strain accumulates in the reduced state even under aerobic conditions while this behavior does not occur with the wild-type strain. The properties of the photoreduction of a bound iron-sulfur center which most likely functions in a substrate-linked dehydrogenase are the same in both strains. These results are discussed in terms of the requirement for a component (rhodoquinone) which regulates the redox state of the primary electron acceptor during normal photosynthetic growth but is not required during dark aerobic growth.     

Regulation of nitrogen fixation in Rhodospirillum rubrum grown under dark, fermentative conditions.

Rhodospirillum rubrum was shown to grow fermentatively on fructose with N2 as a nitrogen source. The nitrogenase activity of these cells was regulated by the NH4+ switch-off/switch-on mechanism in a manner identical to that for photosynthetically grown cells. In vitro, the inactive nitrogenase Fe protein from fermenting cells was reactivated by an endogenous membrane-bound, Mn2+-dependent activating enzyme that was interchangeable with the activating enzyme isolated from photosynthetic membranes.     

Purification and partial characterization of glutamine synthetase from the photosynthetic bacterium Rhodospirillum rubrum

Glutamine synthetase (L-glutamate: ammonia ligase (ADP-forming), EC 6.3.1.2) from the photosynthetic bacterium Rhodospirillum rubrum grown under nitrogen fixing conditions has been purified to homogeneity. The purification procedure involves affinity chromatography on ADP-agarose type 2 as the major purification step. The recovery in the purification is 70%. The specific activity of the purified enzyme is about 10-times higher in the gamma-glutamyl transferase assay than in the coupled biosynthetic assay. The molecular weight was determined to 530,000 by native gradient polyacrylamide gel electrophoresis and to 500,000 by gel filtration. The subunits have an apparent molecular weight of 52,000. Glutamine synthetase isolated from Rsp. rubrum which had been exposed to ammonium ions ('switch-off') before harvest had about 20% of the transferase activity compared with the enzyme purified from nitrogen-starved cells. The low-activity form showed two bands on sodium dodecyl sulfate-polyacrylamide gel electrophoresis.     

Identification of a new gene required for the biosynthesis of rhodoquinone in Rhodospirillum rubrum

Rhodoquinone (RQ) is a required cofactor for anaerobic respiration in Rhodospirillum rubrum, and it is also found in several helminth parasites that utilize a fumarate reductase pathway. RQ is an aminoquinone that is structurally similar to ubiquinone (Q), a polyprenylated benzoquinone used in the aerobic respiratory chain. RQ is not found in humans or other mammals, and therefore, the inhibition of its biosynthesis may provide a novel antiparasitic drug target. To identify a gene specifically required for RQ biosynthesis, we determined the complete genome sequence of a mutant strain of R. rubrum (F11), which cannot grow anaerobically and does not synthesize RQ, and compared it with that of a spontaneous revertant (RF111). RF111 can grow anaerobically and has recovered the ability to synthesize RQ. The two strains differ by a single base pair, which causes a nonsense mutation in the putative methyltransferase gene rquA. To test whether this mutation is important for the F11 phenotype, the wild-type rquA gene was cloned into the pRK404E1 vector and conjugated into F11. Complementation of the anaerobic growth defect in F11 was observed, and liquid chromatography-time of flight mass spectrometry (LC-TOF-MS) analysis of lipid extracts confirmed that plasmid-complemented F11 was able to synthesize RQ. To further validate the requirement of rquA for RQ biosynthesis, we generated a deletion mutant from wild-type R. rubrum by the targeted replacement of rquA with a gentamicin resistance cassette. The ΔrquA mutant exhibited the same phenotype as that of F11. These results are significant because rquA is the first gene to be discovered that is required for RQ biosynthesis.     

A novel sequence for phytoene dehydrogenation in Rhodospirillum rubrum

Differences between the absorption spectra of zeta-carotene (7,8,7',8'-tetrahydrolycopene) and the corresponding conjugated heptaene from diphenylamine-inhibited cultures of Rhodospirillum rubrum have been rationalized by the identification of the latter compound as the unsymmetrical isomer, 7,8,11,12-tetrahydrolycopene. The structures of the other conjugated polyene hydrocarbons, phytoene, phytofluene and neurosporene, have been confirmed and a novel pathway for the dehydrogenation of phytoene to lycopene in these bacteria is described.     

Reversible ADP-ribosylation of dinitrogenase reductase in a nifD- mutant of Rhodospirillum rubrum.

Dinitrogenase reductase from a Rhodospirillum rubrum strain lacking dinitrogenase was reversibly ADP-ribosylated in vivo in response to dark-light transitions. Addition of ammonia also led to ADP-ribosylation in this strain. These results demonstrate that reduced dinitrogenase is a satisfactory substrate for the reversible ADP-ribosylation system of R. rubrum in vivo.     

Identification of chromatophore membrane protein complexes formed under different nitrogen availability conditions in Rhodospirillum rubrum

The chromatophore membrane of the photosynthetic diazotroph Rhodospirillum rubrum is of vital importance for a number of central processes, including nitrogen fixation. Using a novel amphiphile, we have identified protein complexes present under different nitrogen availability conditions by the use of two-dimensional Blue Native/SDS-PAGE and NSI-LC-LTQ-Orbitrap mass spectrometry. We have identified several membrane protein complexes, including components of the ATP synthase, reaction center, light harvesting, and NADH dehydrogenase complexes. Additionally, we have identified differentially expressed proteins, such as subunits of the succinate dehydrogenase complex and other TCA cycle enzymes that are usually found in the cytosol, thus hinting at a possible association to the membrane in response to nitrogen deficiency. We propose a redox sensing mechanism that can influence the membrane subproteome in response to nitrogen availability.     

Identification of two distinct lactate dehydrogenases in Rhodospirillum rubrum

The activities of pyridine nucleotide-independent d- and l-lactate dehydrogenases were detected in membranes from Rhodospirillum rubrum grown under aerobic and phototrophic conditions. Crossed immunoelectrophoretic analysis revealed two antigenically distinct enzymes that were further distinguished by specificity for d- and l-stereoisomers of lactate and by the sensitivity of the d-lactate dehydrogenase to inhibition by oxamate and oxalate.     

Nucleotide sequence of the Rhodospirillum rubrum atp operon.

The nucleotide sequence was determined of a 8775-base-pair region of DNA cloned from the photosynthetic non-sulphur bacterium Rhodospirillum rubrum. It contains a cluster of five genes encoding F1-ATPase subunits. The genes are arranged in the same order as F1 genes in the Escherichia coli unc operon. However, as in the related organism Rhodopseudomonas blastica, neither genes for components of F0, the membrane sector of ATP synthase, nor a homologue of the E. coli uncI gene are associated with this locus, as they are in E. coli.     

Identification of a Ni- and Fe-containing cluster in Rhodospirillum rubrum carbon monoxide dehydrogenase

Methyl viologen-oxidized carbon monoxide dehydrogenase (CODH) from Rhodospirillum rubrum exhibits complex EPR. Comparison to EPR of oxidized apo-CODH (CODH from which Ni is lacking) leads to the identification of signals whose intensity is correlated with the presence of Ni. 61Ni labeling observably broadens the sharpest feature of these signals, as does 57Fe. R. rubrum CODH thus contains a cluster containing both Ni and Fe. The EPR associated with this cluster is unlike any EPR previously attributed to Ni-containing prosthetic groups in other CODH enzymes or Ni-containing hydrogenases. The CO-analogue, CN-, perturbs the EPR signals that are attributed to the Ni-Fe species.     

Isolation and partial characterization of the messenger RNA encoding the B880 holochrome protein of Rhodospirillum rubrum

The B880 holochrome messenger RNA was extracted from cultures of the photosynthetic bacterium Rhodospirillum rubrum. It was purified by chromatography on Sepharose 4B followed by sucrose density gradient centrifugation. The purified fractions were shown to program an Escherichia coli cell-free system into synthesizing both the alpha and the beta polypeptides of the holochrome. The translation products were identified by immunoprecipitation with specific antibodies raised against these polypeptides. The latter are effective competitors with the translation products for antigen-antibody complex formation. The purest mRNA preparations contained approximately 33% holochrome messenger RNA activity. Its most probable size, as determined by agarose gel electrophoresis in the presence of 6 M urea or methylmercuric hydroxide, is approximately 620 nucleotides. Since the combined sizes of the alpha and beta polypeptides add up to only 106 amino acid residues, we conclude that the holochrome mRNA is most probably polycistronic.