Assembly of bacteriophage T4 tail fibers. IV. Subunit composition of tail fibers and fiber precursors

Using a novel purification procedure, the protein composition of the tail fibers of bacteriophage T4 has been determined. Fibers contain four proteins whose molecular weights, as estimated by sodium dodecyl sulfate/acrylamide gel electrophoresis, are 150,000, 125,000, 40,000 and 24,000. The two largest proteins have been previously identified as the products of genes 34 (P34) and 37 (P37), respectively (King and Laemmli, 1971; Ward and Dickson, 1971). The two smaller proteins have now been identified as the products of genes 35 (P35) and 36 (P36), respectively. The products of the two other known phage genes required for fiber assembly, 38 and 57, have been identified as non-structural phage proteins with molecular weights of 26,000 and 10,000, respectively.     

Bacteriophage T4 tail assembly: structural proteins and their genetic identification

We have identified the structural proteins of phage T4 precursor tails. Complete tails, labeled with ¹⁴C-labeled amino acids, were isolated from cells infected with mutants blocked in head assembly. The proteins were characterized by sodium dodecyl sulfate-acrylamide gel electrophoresis and subsequent autoradiography. The complete tails are made up of at least fifteen different species of phage proteins.To identify the genes specifying these proteins we prepared ¹⁴C-labeled amino acid lysates made with amber mutants defective in each of the twenty-one genes involved in tail assembly. Comparison of the gel pattern of the amber mutant lysates with wild type lysates enabled us to identify the following gene products, with molecular weights in parentheses: P6 (85,000); P7 (140,000); P8 (46,000); P9 (34,000); P10 (88,000); P11 (26,000); P12 (55,000); P15 (35,000); P18 (80,000); P19 (21,000); P29 (77,000). These eleven species are all structural proteins of the tail. The genetically unidentified tail proteins have molecular weights of 42,000, 41,000, 40,000 and 35,000. They are likely to be the products of known phage genes which were not resolved in the crowded middle region of the whole lysate gel patterns. The major tail proteins are all synthesized during the late part of the phage growth cycle.The mobilities of the proteins derived from tails did not differ from the mobilities of the proteins when derived from the unassembled pools of subunits accumulating in mutant infected cells, or when derived from complete phage particles.The genes for at least seven of the structural proteins are contiguous on the genetic map. Genes for proteins needed in many copies seem to be clustered separ- ately from genes whose products are needed in only a few copies. Consideration of protein sizes and published mapping data on phage T4 also suggest that the phage structural proteins are, on the average, much larger than the non-structural proteins.The requirement that at least fifteen different species of proteins must come together in forming a phage tail emphasizes the complexity of this morphogenetic process.     

Assembly of bacteriophage T4 tail fibers: Identification and characterization of the nonstructural protein gp57

Summary Formation of both the tail fiber and the baseplate of bacteriophage T4 depends on the product of T4 gene 57. A single amber mutation in that gene causes loss of two T4-specific proteins. Their molecular weights are 18,000 and about 6,000, respectively, based on their electrophoretic mobilities in SDS-polyacrylamide gels. E. coli carrying a cloned T4 DNA fragment of about 700 basepairs, which directs the synthesis of the smaller protein only, specifically supports the growth of gene 57 amber mutants. We conclude that the small protein is a functional product of gene 57.Abbreviations Am ampicillin - Cm chloramphenicol - Tet tetracycline - SDS sodium dodecyl sulfate - bp basepairs - wt wildtype - Su suppressor - Km kanamycin - ds double stranded - ss single stranded - SDS-PAGE SDS-polyacrylamide gel electrophoresis     

Morphogenesis of the tail fiber of bacteriophage T4

Summary The formation of the tail fiber of bacteriophage T4 is controlled by genes 34, 35, 36, 37, 38 and 57. The gene 35 product was partially purified by IRC-50 column chromatography and by ammonium sulfate precipitation. The genes 36-37-38 directing component was purified 570 fold using the method of salting in and out and a sucrose density gradient centrifugation.Some characters of the purified components and the complementation reaction between these two components were investigated.     

Bacteriophage T4 tail assembly: proteins of the sheath, core and baseplate

Structural intermediates in phage tail formation have been isolated by sucrose gradient centrifugation from cells infected with mutants blocked at various stages in tail assembly. The polypeptide chains of these structures containing ¹⁴C-labeled amino acids have been analyzed by sodium dodecyl sulfate—acrylamide gel electrophoresis, enabling us to identify the proteins forming the various morphological components of the tail. Comparison of sheathed tails with corebaseplates shows that the contractile sheath is composed of a single species of subunit, the product of gene 18 (mol.wt 80,000). The site for head attachment terminating the tail is composed of the product of gene 15 (mol.wt 35,000). Comparison of core-baseplates with free baseplates shows that the tail core is composed of a single species of subunit, the product of gene 19 (mol.wt 21,000).Free baseplates are composed of at least twelve species of proteins: the products of genes 6, 7, 8, 9, 10, 11, 12 and 29, and four genetically unidentified species.The incomplete tails which accumulate in cells infected with mutants defective in genes 9, 11 and 12, which specify proteins on the outside of the baseplate, have also been characterized. Tails from 9^? lysates lack only P9. Tails from 11^? lysates lack both Pll and P12. Tails from 12^? infection lack only P12. Incorporation of P12 into the baseplate requires the function of gene 57, which is also required for tail fiber assembly. P57 thus appears to take part in the maturation of three different phage structural proteins.The sequential nature of the protein interactions in tail formation is discussed in terms of the regulation of morphogenesis at the level of assembly.     

Structure of the distal half of the bacteriophage T4 tail fiber

Studies of T4 amber mutants defective in tail fiber assembly have allowed the antigens of the distal half of the T4 tail fiber to be divided into two classes, called B and C. Only a few of the antibodies directed against these antigens cross-react with the related phage, T2. By adsorbing these cross-reactive antigens, it has been possible to produce a T4-specific anti-BC serum, AS1.The product of gene 37, P37, is the major protein in the distal half-fiber. A series of T2-T4 hybrid phage has been isolated which carry part of P37 from T2 and part from T4. By testing the ability of these hybrids to block the activity of AS1, it has been possible to divide the C antigen into 4 or 5 subclasses which have different specificities and are determined by different parts of P37.Observation of the tail fiber-antibody complexes formed by these hybrids and AS1 has allowed a determination of the topology of P37 in the assembled fiber. It is oriented linearly with its N-terminus near the joint between the two half-fibers and its C-terminus near the tip of the fiber. These observations lead to a simple model for the structure of the distal half-fiber.     

Bacteriophage HK97 structure: wholesale covalent cross-linking between the major head shell subunits.

We describe initial genetic and structural characterizations of HK97, a temperate bacteriophage of Escherichia coli. We isolated 28 amber mutants, characterized them with respect to what phage-related structures they make, and mapped many of them to restriction fragments of genomic DNA. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of HK97 virions revealed nine different protein species plus a substantial amount of material that failed to enter the gel, apparently because it is too large. Five proteins are tail components and are assigned functions as tail fiber subunit, tail length template, and major shaft subunit (two and possibly three species). The four remaining proteins and the material that did not enter the gel are head components. One of these proteins is assigned as the portal subunit, and the remaining three head proteins in the gel and the material that did not enter the gel are components of the head shell. All of the head shell protein species have apparent molecular masses well in excess of 100 kDa; they share amino acid sequence with each other and also with a 42-kDa protein that is found in infected lysates and as the major component of prohead structures that accumulate in infections by one of the amber mutants. We propose that all of the head shell species found in mature heads are covalently cross-linked oligomers derived from the 42-kDa precursor during head shell maturation.     

In vivo bypass of chaperone by extended coiled-coil motif in T4 tail fiber

The distal-half tail fiber of bacteriophage T4 is made of three gene products: trimeric gp36 and gp37 and monomeric gp35. Chaperone P38 is normally required for folding gp37 peptides into a P37 trimer; however, a temperature-sensitive mutation in T4 (ts3813) that suppresses this requirement at 30 degrees C but not at 42 degrees C was found in gene 37 (R. J. Bishop and W. B. Wood, Virology 72:244-254, 1976). Sequencing of the temperature-sensitive mutant revealed a 21-bp duplication of wild-type gene 37 inserted into its C-terminal portion (S. Hashemolhosseini et al., J. Mol. Biol. 241:524-533, 1994). We noticed that the 21-amino-acid segment encompassing this duplication in the ts3813 mutant has a sequence typical of a coiled coil and hypothesized that its extension would relieve the temperature sensitivity of the ts3813 mutation. To test our hypothesis, we crossed the T4 ts3813 mutant with a plasmid encoding an engineered pentaheptad coiled coil. Each of the six mutants that we examined retained two amber mutations in gene 38 and had a different coiled-coil sequence varying from three to five heptads. While the sequences varied, all maintained the heptad-repeating coiled-coil motif and produced plaques at up to 50 degrees C. This finding strongly suggests that the coiled-coil motif is a critical factor in the folding of gp37. The presence of a terminal coiled-coil-like sequence in the tail fiber genes of 17 additional T-even phages implies the conservation of this mechanism. The increased melting temperature should be useful for "clamps" to initiate the folding of trimeric beta-helices in vitro and as an in vivo screen to identify, sequence, and characterize trimeric coiled coils.     

Morphogenesis of the tail fiber of bacteriophage T4

Summary A component of T₄ phage tail fiber was purified from the lysate of E. coli strain Bb infected with gene 35 defective mutant of T₄D (amB252). The purified component which occupies a part of the distal half fiber is formed under the control of genes 36, 37 and 38. The purified component was characterized and compared with the genes 35-36-37-38 directed half fiber. Although the components resembled each other, differences were observed in length, stability and chemical compositions. The results of a further decomposition of this component and the correlating characters of the gene 35 and 36 directed products were discussed.     

Assembly of the tail of bacteriophage T4

The protein products of at least 21 phage genes are needed for the formation of the tail of bacteriophage T4. Cells infected with amber mutants defective in these genes are blocked in the assembly process. By characterizing the intermediate structures and unassembled proteins accumulating in mutant-infected cells, we have been able to delineate most of the gene-controlled steps in tail assembly. Both the organized structures and unassembled proteins serve as precursors for in vitro tail assembly. We review here studies on the initiation, polymerization, and termination of the tail tube and contractile sheath and the genetic control of these processes. These studies make clear the importance of the baseplate; if baseplate formation is blocked (by mutation) the tube and sheath subunits remain essentially unaggregated, in the form of soluble subunits. Seventeen of the 21 tail genes specify proteins involved in baseplate assembly. The genes map contiguously in two separate clusters, one of nine genes and the other of eight genes. Recent studies show that the hexagonal baseplate is the end-product of two independent subassembly pathways. The proteins of the first gene cluster interact to form a structure which probably represents one-sixth of the outer radius. The products of the other gene cluster interact to form the central part of the baseplate. Most of the phage tail precursor proteins appear to be synthesized in a non-aggregating form; they are converted to a reactive form upon incorporation into preformed substrate complexes, without proteolytic cleavage. Thus reactive sites are limited to growing structures.     

Characterization of the Antigenic Subunits of the Envelope Protein of Yersinia pestis

Chemical, physical, and immunological properties of the envelope antigen of Yersinia pestis strains have been investigated. The antigen consists of two components with isoelectric points (pI) of 4.6 and 4.8. One component (pI 4.6) is a protein bound to a small carbohydrate moiety identified as an oligomeric galactan; the other component (pI 4.8) is a simple protein. These two components are antigenically identical. In buffered solution, the antigen exists as aggregates of molecular weights larger than 300,000. The aggregates dissociate into a variety of smaller molecular weight forms depending on the nature of the treatment for dissociation. Each aggregate can be further dissociated into a single antigenic subunit fraction containing protein and glycoprotein species with molecular weights in the range from 15,000 to 17,000. The subunits can be obtained by a dissociation treatment with 0.1% mercaptoethanol in 0.25% sodium dodecyl sulfate at 95 C for 5 min. The subunits will readily reaggregate into a variety of larger molecular weight forms on the removal of dodecyl sulfate.     

Transmission of amber mutants of bacteriophage T4. III. Thermostability of the replication of amber mutants in cells of a non-permissive host is typical for the majority of phage tail genes

The article deals with determination of the spreading of the earlier discovered phenomenon of the temperature sensitivity of multiplication of T4 phage amber mutants. On the basis of the study of the dependence of multiplication of 50 amber mutants in 22 genes of T4 phage tail in the cells of non-permissive host on the incubation temperature in the range of 15-41 degrees C, the following conclusion is drawn: temperature sensitivity of multiplication of amber mutants appears to be gene-specific and is widely spread among T4 phage genes, i.e. in the case of amber mutants the burst size decreases, even for 14 tail genes, by several orders with the increase in incubation temperature. Temperature sensitivity of multiplication is typical of amber mutants in the genes whose proteins are either of small number in a phage particle (several molecules) or play the role of catalytic factors. Moreover, genes, amber mutants of which possess temperature sensitivity of multiplication, map in defined clusters.     

Structure and function of the major tail protein of bacteriophage lambda: Mutants having small major tail protein molecules in their virion

Viable mutants of bacteriophage lambda having small major tail protein molecules in their virion have been isolated as pseudo-revertants of a defective prophage mutant (defK244) in gene V, which codes for the major tail protein. According to deletion mapping, the defK244 mutation is located near the translation terminal of gene V, whereas some mappable reversion mutations leading to small major tail protein molecules map upstream to defK244 but still downstream to all the amber mutations tested. This suggests (if not proves) that the removable part is located at or near the carboxyl terminal of the major tail protein. Sodium dodecyl sulfate/polyacrylamide gel electrophoresis and buoyant density measurements of the mutant phage particles show that as much as one-third of the major tail protein molecule can be removed without losing its capacity to maintain the total shape and infectivity of the phage particles. In the three-dimensional structure of the tail the removable part of the molecule exists as a protrusion at the outer part of the tail tube according to electron microscopy and hydrodynamic calculations based on sedimentation velocity experiments.     

Structure of bacteriophage T4 genes 37 and 38

The distal half of the bacteriophage T4 tail fiber interacts with the bacterial surface during adsorption. The specificity of this interaction is controlled by the largest polypeptide in this half fiber, P37. During assembly of the half fiber P37 interacts with P38. These two gene products are incompatible with the corresponding gene products from the related phage T2: T2 P37 does not interact with T4 P38 and T4 P37 does not interact with T2 P38. Thus P37 has two specific functions, interaction with P38 and interaction with the bacterial surface. Both functions differ in specificity between T2 and T4. We have compared genes 37 and 38 of T2 with the corresponding genes of T4 to determine in more detail how the genes have diverged.Crosses between T2 and T4 phage which are mutant in genes 37 and 38 divide gene 37 into four segments which show different frequencies of T2-T4 recombination. These crosses show that both functional specializations of P37, attachment to the bacterial surface and interaction with P38, are determined by a single segment at the carboxyl end of P37. In this segment of gene 37 and in all of gene 38 there is no recombination between T2 and T4. The rest of gene 37 contains a segment with a small amount of T2-T4 recombination flanked by two small segments with relatively high T2-T4 recombination.When T2/T4 heteroduplex DNA molecules are examined under the electron microscope, four heterologous loops appear in the region of genes 37 and 38. When genes 37 and 38 are aligned with this heteroduplex pattern, regions of low recombination correspond to regions of T2-T4 heterology. Begions with relatively high recombination are homologous.As determined from sodium dodecyl sulfate polyacrylamide gels, the molecular weight of T2 P37 is about 13,000 larger than that of T4 P37. Analysis of T2-T4 hybrid phage has shown that, like the functional differences, this molecular weight difference is determined by the carboxyl terminal segment of P37.     

Poliovirus morphogenesis. I. Identification of 80S dissociable particles and evidence for the artifactual production of procapsids.

The current model of poliovirus morphogenesis postulates a fundamental role for procapsid, 80S shells that, upon interaction with viral RNA and subsequent proteolytic cleavage, give rise to complete virus particles. Although 80S sedimenting particles can, indeed, be isolated from cytoplasmic extracts of infected cells, their physical properties differ from those reported for procapsids. Far from being stable structures, they can be dissociated by pH 8.5 and 0.1% sodium dodecyl sulfate into slower-sedimenting subunits. The reasons for this discrepancy were investigated, and two main modalities leading to the appearance of procapsids in vitro were identified. The first involves a temperature-mediated conversion of dissociable 80S particles into stable 80S procapsids, and the second involves the self-assembly of endogenous 14S subunits, also primed by an increase in the temperature of cytoplasmic extracts.     

Production and Reactivity of Immune Sera Specific for HADEN Virus Polypeptide Antigens

Antisera were prepared against the three structural polypeptides of HADEN virus dissociated with sodium dodecyl sulfate. These immunological reagents were used in immunofluorescence tests to study the kinetics and location of polypeptide antigen appearance in infected cells. These sera did not neutralize virus infectivity, did not cross-react with adenovirus-associated virus-infected cells, and reacted in complement fixation tests with sodium dodecyl sulfate-dissociated virus, but not with complete virus antigen. The polypeptide antigens were heat labile, and all appeared in infected cells at least 2 h prior to whole-virus antigen.     

Attachment of tail fibers in bacteriophage T4 assembly. Identification of the baseplate protein to which tail fibers attach

A phage-neutralizing rabbit antiserum collected after immunization with tail-fiberless bacteriophage T4 particles was adsorbed with complete T4 phage. The resulting adsorbed serum inhibited tail fiber attachment in vitro. To identify the antigens against which this inhibitory activity was directed, blocking experiments were carried out with the adsorbed serum. Isolated complete baseplates and mutant-infected-cell extracts lacking known baseplate gene products but containing gene 9 product showed similar high levels of blocking activity. By contrast, both tail-fiberless particles lacking gene 9 product and infected-cell extracts made with gene 9 mutants showed 30-fold to 100-fold lower blocking activity. These results strongly support the conclusion that gene 9 product is the baseplate protein to which tail fibers attach.     

Morphogenesis of the tail fiber of bacteriophage T4

Summary The tail fiber component ofcoli phage T4 was purified and partially characterized. The material was purified approximately 1 200 fold over the original lysate obtained fromE. coli B/1 cells infected with a mutant in gene 34 (am A455). The purified material was ultracentrifugally, electrophoretically and electron microscopically homogeneous. Its chemical composition were also analyzed.The purified component was characterized to be a half fiber controlled by at least four genes, 35, 36, 37, and 38.This work was supported by a grant from the Ministry of Education, Japan, and a grant (No. 5 ROI GM-10982) from the National Institute of Health, U.S.A.     

Comparative Genetics of the T-Even Bacteriophages

A system of amber mutants has been developed for each of the T-even bacteriophages T2 and T6, to complement those already available in T4. In T2 these mutants identify 52 genes, of which 49 are homologous with T4 genes; in T6 they identify 45 genes, of which 42 have T4 homologs, and an additional one which is homologous to a T2 gene not yet identified in T4. In both T2 and T6, recombination between mutants is characterized by considerable negative interference, which is correctable by a mapping function designed for T4. Recombinational maps of T2 and T6 constructed with these mutants have the same gene order and nearly the same gene spacings as in T4, with the exception of the tail fiber region; T2 and T6 appear to lack a localized recombinational expansion of this region found in T4. Homologous gene products from all three phages are in general interchangeable, with the exception of those from two apparently "co-adapted" tail fiber genes, 37 and 38. The general genetic similarity of all three phages suggests that they are analogous to races of higher organisms, retaining the capacity for genetic exchange despite some clear genetic differences and some incipient isolating mechanisms.     

Replication of bacteriophage f1: A complex containing gene II protein in gene V mutant-infected bacteria

A dense complex has been isolated from bacteria infected with gene V amber mutant f 1 bacteriophage. The major protein in this complex is the f 1 bacteriophage-specific gene II protein. Other proteins in the complex include the f 1 bacteriophage coat protein and proteins which migrate on sodium dodecyl sulfate/polyacrylamide gel electrophoresis with the f1 bacteriophage-specific gene III, gene IV and X protein. A protein of approximately 20,000 M_r is also present in the complex. Examination of bacteria infected with gene V mutant f1 bacteriophage revealed the complex as a densely staining amorphous body which appears to be associated with the cytoplasmic membrane. Bacteria infected with f1 bacteriophage that contain amber mutations in genes other than gene V do not contain this complex.