昆虫肠道微生物的多样性、功能及应用

昆虫肠道微生物种类繁多、数量巨大,在与宿主长期的协同进化过程中,不仅形成极为多样的种群结构,也进化出多样的生物学功能,对宿主的营养、生理、发育、防御、抗逆等方面都产生显著影响。近年来,越来越多的昆虫肠道微生物的多样性和生物学特性被揭示,具有农业、能源和环保价值的众多微生物种类和活性基因得到了开发,展现出巨大的应用潜力。本文将从昆虫肠道微生物的多样性、生物学功能、应用三个方面对近年来的研究进展进行总结,并进行展望。     

五节芒定居对尾矿砂重金属形态、微生物群落功能及多样性的影响

选择尾矿砂裸地和4个五节芒(Miscanthus floridulus)定居地(RI、RII、RIII和RIV)为样地, 分别研究了五节芒定居对尾矿砂重金属形态转化和微生物功能参数的影响。结果表明: 五节芒自然定居显著地提高了尾矿砂碳酸盐结合态和硫化物-有机物结合态重金属比例(p＜0.05), 降低了尾矿砂残渣态重金属的比例(p＜0.05)。土壤微生物群落的纤维素分解作用、酚转化作用、固氮作用、氨化作用、硝化作用、有机磷转化作用、功能多样性、4类不同碳源(碳水化合(CH)、聚合物(PL)、胺类化合物(AM)和杂合物(ML))均随着五节芒自然定居显著提高(p＜0.05)。而氨基酸(AA)的利用强度却显著下降(p＜0.05)。典范相关分析(CCA)表明: 土壤微生物功能参数的总体变化与土壤碳酸盐结合态和硫化物-有机物结合态重金属的含量呈显著正相关, 与残渣态重金属含量呈显著负相关。该研究结果表明, 五节芒定居不仅促进了尾矿砂重金属朝着沉淀态和螯合态方面转化, 而且还显著地改善了尾矿砂微生物群落的功能发挥。因而, 五节芒在重金属矿业废弃地恢复实践中具有较大的应用潜力。     

近平滑念珠菌形态多样性及毒力因子的分泌活性研究

目的比较近平滑念珠菌不同临床分离株的菌落和细胞形态及其分泌型天冬氨酸蛋白酶(SAP)酶活性,阐明该病原真菌的形态多样性及毒力差异。方法分别用Lee’s Glc NAc、Lee’s glucose、Spider 3种培养基于37℃培养7株近平滑念珠菌临床分离株,观察各菌株的菌落及细胞形态;用牛血清白蛋白培养基(BSA)于30℃培养7株近平滑念珠菌,通过观察形成晕圈能力的强弱确定其毒力因子(SAP)的分泌活性。结果 7株近平滑念珠菌临床分离株在不同条件下菌落表型有较明显的不同,菌落有光滑型、皱褶型及火山口样型,且染色程度不同,各分离株细胞在形成酵母相或菌丝相的能力方面呈现出不同程度的差异;SAP酶活性观察实验中检测到各菌株水解晕圈大小从2.55 cm到1.55 cm各不相等。结论近平滑念珠菌临床分离株具有形态多样性,各菌株SAP酶活性明显不同,提示菌株间的毒力有明显差异。     

青藏高原微生物多样性研究

正青藏高原被誉为世界屋脊,其内部除平原外还有许多山峰、冰川、高山湖泊和高山沼泽,是生态环境最为奇特、生物资源最为丰富的自然资源宝库之一。同时,青藏高原的微生物群落结构及其多样性与其他区域存在巨大差异,因而具有极高的科学研究价值,并逐渐被人们所关注。研究发现气候变化对青藏高原高寒草地生态系统草丛-地境界面微生物会产生重要的影响[1]。冰川雪藻的研究主要在南部的Yala冰川开展,     

中国温泉微生物物种多样性及其酶活性研究进展

微生物作为生物群体的重要组成成员,其生长受外界物化条件(如温度、盐度、pH等)影响较大。温泉作为极端水生环境之一,属于相对稳定且较为特殊的生态系统,使生长于其中的微生物可能具有适应高温等特殊生境的独特生存生理机制,具体表现为微生物物种及其活性次级代谢产物呈现出一定的多样性与新颖性。本文从菌株物种多样性分析及其酶活性研究方面,综述了近5年来国内温泉微生物相关研究进展,以期为温泉等极端环境微生物资源开发与保护提供参考。     

肠道微生物多样性与能量代谢调控及肥胖关系的研究进展

肠道微生物与宿主之间相互选择,构成了一个相对稳定的超有机体。宿主基因型和遗传关系影响肠道微生物的生态学特征,而肠道微生物发酵肠道内多糖,为宿主提供可吸收利用的养分,增强肠道对养分吸收的能力。同时,肠道微生物还影响一些转录因子的活性,调控宿主基因的表达,增强宿主甘油三酯的合成和脂肪沉积,减少脂肪酸氧化分解,调控宿主能量代谢。     

宁南山区典型草本植物茎叶分解对土壤酶活性及微生物多样性的影响

采用凋落物分解袋法,以宁南山区典型草本植物长芒草、铁杆蒿、百里香为研究对象,分析了3种植物茎叶分解过程中土壤酶活性变化特征和分解后期微生物多样性特征,以及土壤酶活性与初始土壤化学性质的关系.结果表明: 植物茎叶分解480 d后,各处理土壤酶活性均有不同程度的增加,且长芒草处理土壤蔗糖酶活性和碱性磷酸酶活性最高,分别为32.40和1.99 mg·g^-1·24 h^-1,百里香处理土壤脲酶活性最高(2.66 mg·g^-1·24 h^-1),铁杆蒿处理土壤纤维素酶活性最高(1.42 mg·g^-1·72 h^-1).分解末期土壤纤维素酶活性与土壤初始微生物生物量碳呈显著正相关;分解末期土壤纤维素酶活性与土壤初始硝态氮含量呈显著负相关.添加植物茎叶处理土壤细菌和真菌的Ace指数、Chao指数和Shannon指数均显著大于对照,Simpson指数显著小于对照.植物茎叶的分解显著提高了土壤细菌和真菌的丰度及多样性,进而提高了植物茎叶的分解速率,促进了生态系统营养物质的循环与转化.     

农村混合污水灌溉对土壤养分含量、酶活性及微生物多样性的影响

通过土柱模拟试验,研究了农村混合污水灌溉(WG)对农田土壤pH、养分含量、酶活性及微生物多样性等土壤肥力指标的影响.结果表明:与清水灌溉(CK)相比,经过WG处理,土壤全钾、全磷、速效钾和碱解氮含量增加(4.54%~46.84%),而土壤pH、有机质、全氮和速效磷含量降低(2.02%~32.61%),且土壤pH极显著降低(P<0.01),土壤速效钾含量显著增加(P<0.05);土壤过氧化氢酶和土壤酸性磷酸酶活性低于CK处理(P<0.01),而土壤脲酶和土壤转化酶活性显著高于CK处理(P<0.05);土壤中细菌和真菌的Shannon指数、Ace指数、Chao指数、Coverage指数等均有所提高,但降低了Simpson指数,改变了细菌和真菌在属水平上各优势物种的相对丰度.内梅罗综合指数法评价结果表明,农村混合污水灌溉提高了供试土壤的综合肥力水平.本研究为示范区农村混合污水灌溉模式的田间试验提供了重要依据.     

免培养法对大鲵肠道微生物多样性的研究

【目的】了解大鲵肠道内生细菌的组成及多样性。【方法】采用美国Mo Bio公司试剂盒提取大鲵肠道内容物总DNA,选用细菌通用引物799F和1492R对总DNA进行16S rRNA基因特异性扩增,构建大鲵肠道内容物内生细菌16S rRNA基因克隆文库,对阳性克隆进行限制性内切酶片段长度多态性(PCR-RFLP)分析,并对HaeⅢ酶切带谱不同的菌液进行测序,构建系统发育树。【结果】根据酶切带谱分析和测序结果的不同,将随机挑取的101个阳性克隆归为28个不同的可操作分类单元(OTUs),系统发育分析表明这些克隆序列分别属于变形菌门(Proteobacteria)、梭菌门(Clostridia)、芽孢杆菌门(Bacilli)和衣原体门(Chlamydiae)4个门。其中,变形菌门(Proteobacteria,占克隆总数的92.08%)为最优势类群。序列比对结果表明这些克隆序列分别与已报道的20个属具有较高的相似性。此外,还有一个OTU在系统发育树上形成独立分支且未能确定其分类。【结论】大鲵肠道内生细菌多样性丰富,并且可能存在新的分类单元。     

Effect of fibre sources on performance,serum parameters,intestinal morphology,digestive enzyme activities and microbiota in weaned pigs

ABSTRACT

This study was conducted to evaluate the effects of wheat bran (WB) as insoluble fibre source, and sugar beet pulp (SBP) as soluble fibre source, on performance, serum parameters and intestinal health in weaned pigs. A total of 90 weaned pigs (BW: 7.33 ± 1.24 kg) were randomly assigned to three dietary treatments: (1) a control diet (CON) based on corn and soybean meal; (2) CON + 6% WB; (3) CON + 6% SBP. Each treatment had five replicate pens with six pigs per pen. The experimental period was divided into two phases (d 0 to 14 and d 14 to 28). Pigs in group WB tended to have greater avarage daily gain than those in group SBP. Compared with CON, SBP reduced (p < 0.05) the apparent total tract digestibility (ATTD) of dry matter, organic matter (OM), gross energy and neutral detergent fibre on d 14 and 28, while WB decreased (p < 0.05) the ATTD of OM on d 28. Pigs in group SBP had higher (p < 0.05) glucagon-like peptide 1 concentration than the other groups on d 14 and 28. The villus height to crypt depth (V:C) ratio of duodenum and jejunum in pigs fed diet WB were greater (p < 0.05) than in group SBP. The WB increased (p < 0.05) the V:C ratio of ileum compared with CON or SBP. Compared with SBP, WB increased (p < 0.05) the sucrase activity in the duodenum. Moreover, pigs in WB had higher (p < 0.05) activities of maltase and sucrase in the jejunum compared with CON or SBP. The abundances of Ruminococcaceae and Prevotellaceae were increased (p < 0.05) in WB, while the Lachnospiraceae abundance was increased (p < 0.05) in SBP. WB increased (p < 0.05) concentrations of acetate, butyrate and total short-chain fatty acids (SCFA), while SBP increased (p < 0.05) concentrations of acetate and total SCFA when compared with CON. In conclusion, WB was beneficial to performance in weaned pigs by improving morphology, enzyme activities and microbiota when compared with SBP, highlighting that effects of fibre depends on the fibre sources.     

Changes in digestive enzyme activity, intestine morphology, mucin characteristics and tocopherol status in mink kits (Mustela neovision) during the weaning period

Weaning of livestock mammals is often associated with digestive problems related to profound changes in the physiology of the gastrointestinal tract. This study was undertaken to study the developmental changes in the gastrointestinal tract of mink kits during the period of 34 to 59 days of age. Twenty-four mink kits from eight litters were included in the experiment. The dams and their litters were kept under standard farm conditions. The dams and the kits were fed a diet consisting of 48.1% protein, 40.7% fat and 11.1% carbohydrate of metabolizable energy. The mink kits were weaned at 42 days of age. At 34, 47 and 59 days of age, one male mink kit from each litter was euthanized. The activity of amylase, trypsin, chymotrypsin and lipase in the pancreatic tissue increased during the experimental period, whereas the activity of carboxyl ester hydrolase remained constant. The vitamin E concentration in plasma was stable from 34 to 59 days of age, whereas the concentration decreased in the liver. The stereochemical composition of α-tocopherol showed a steep decrease in the concentration of the biologically most active natural isomer in both plasma and liver through the whole weaning period, whereas the biologically less active 2S isomers showed a clear increase. The concentration of bile salts did not change during the experimental period. The villous height increased in the proximal part of the small intestine and decreased in the distal part, whereas the crypt depth was doubled in both the proximal and distal part of the small intestine. The mucin-staining area on the villi was markedly reduced during the experimental period but no change in the mucin-staining area in the crypts was observed.     

饲养方式对藏猪结肠消化酶活性、菌群结构及短链脂肪酸含量的影响

【目的】为探究饲养方式对藏猪结肠消化酶活性、菌群结构和短链脂肪酸含量的影响。【方法】研究分别选取5头相同月龄的放养藏猪和舍饲藏猪。屠宰采集结肠粪便样品,分别利用酶联免疫吸附法(enzyme linked immunosorbent assay, ELISA)试剂盒、高通量测序技术和气相色谱仪测定放养藏猪和舍饲藏猪结肠消化酶活性、菌群结构和短链脂肪酸含量。【结果】同一月龄下,放养藏猪的日增重显著低于舍饲藏猪(P<0.05)。放养藏猪结肠中纤维素酶和半纤维素酶的活性均显著高于舍饲藏猪(P<0.05);2种饲养方式藏猪结肠的6种α多样性指数均无显著差异(P>0.05),且主成分分析(principal component analysis, PCA)得到放养藏猪和舍饲藏猪结肠菌群存在一定的相似性。在门和科分类水平上,相较于舍饲藏猪,放养藏猪结肠中疣微菌门、黄杆菌科、月形单胞菌科、浮霉状菌科和伊格尔兹氏菌科的相对丰度显著升高,而链球菌科、韦荣氏球菌科、假单胞菌科、红环菌科、红螺菌科、乳杆菌科、理研菌科和巴斯德氏菌科的相对丰度显著降低(P<0.05);在属和种分类水平上,...     

放牧藏猪、舍饲藏猪与商品猪粪便真菌群落组成及其与饲粮纤维消化的相关性研究

[目的]研究饲养在西藏高原的放牧藏猪、舍饲藏猪和商品猪(杜长大猪,DLY猪)粪便中真菌群落组成的差异性,获取与饲粮粗纤维消化相关的真菌群落.[方法]以饲养在西藏高原的5月龄放牧藏猪、舍饲藏猪和DLY猪为研究对象,采用消化试验测定放牧藏猪、舍饲藏猪和DLY猪对饲粮粗纤维的表观消化率.采集粪便样品利用单分子实时测序技术(S...     

Adaptability of the digestive function according to age at weaning in the rabbit: I. Effect on feed intake and digestive functionality

The functional adaptability of the digestive system to the level of feed intake was investigated in the young rabbits by comparing two groups of 12 litters each, weaned at 21 (W21) or 35 (W35) days of age. From 14 days onwards, rabbits were fed a pelleted feed (NDF: 332 g/kg, CP: 177 g/kg, starch: 98 g/kg, as-fed basis). Until 49 days of age, the profile of digestive enzymes was weekly determined in the small intestinal content and mucosa, as well as caecal fermentation traits and fibrolytic activities. In the W21 group, the solid feed intake was increased by 57% between 21 and 35 days (P < 0.01), while the daily body growth was lower from 21 till 42 days (-17%, P < 0.05) when compared with the W35 group. Activities of enzymes of pancreatic origin were only scarcely influenced by the weaning age. In the W21 group, amylase activity tended to be lower at 28 days of age (-36%, P = 0.064), and trypsin activity was decreased by 31% at 49 days of age (P < 0.01). Lipase activity was similar in both weaning groups. Duodenal and jejunal activities of maltase and aminopeptidase N (APN) were higher on day 28 in the W21 group as compared with the W35 group (×1.4 to ×2.4, respectively, P < 0.05). On day 35, duodenal APN activity was twice as higher in the W21 group than in the W35 group (P < 0.01). In caecum, major differences between both weaning groups were observed at 28 days of age with a decrease in ammonia concentration (-43%, P < 0.01) in W21 compared with W35 rabbits. Conversely, the acetate proportion was 5% higher in the W21 group (P < 0.01) on day 28. In conclusion, the digestive tract of early-weaned rabbits showed some adaptative properties in response to nutritional environment changes, but they were insufficient to maintain their growth rate.     

北草蜥几种消化酶活力比较

应用酶学分析法测定了越冬后北草蜥胃、肠组织中蛋白酶、淀粉酶、纤维素酶的活力。结果表明 ,不同年龄、性别的北草蜥同一组织中消化酶活力有显著差异 ;不同地理种群的北草蜥同一组织中消化酶活力有显著差异 ;不同消化酶在北草蜥同一组织中的活力有显著差异 ;在北草蜥不同的组织中同一消化酶的活力有显著差异。说明北草蜥消化酶的活力与年龄、性别、部位和地理环境等因素有关 ,受食物组成、能量需求和遗传等因素的影响 ,产生了不同的酶活力和分布。这也说明生物长期适应环境 ,形成了不同的代谢水平     

Bacteriophage cocktail and multi-strain probiotics in the feed for weanling pigs: effects on intestine morphology and targeted intestinal coliforms and Clostridium

Two experiments were conducted to investigate the effects of dietary supplementation of bacteriophage cocktail, probiotics and a combination of these two supplements on performance and gut health of weanling pigs. In Experiment 1, 150 weaned piglets were randomly allotted to three treatments on the basis of BW. The dietary treatments included a basal diet supplemented with 0 (control), 1.0 and 1.5 g/kg bacteriophage cocktail. Pigs fed 1.0 and 1.5 g/kg bacteriophage product had greater (P<0.05) average daily gain (ADG), apparent total tract digestibility of dry matter from day 22 to 35, ileal Lactobacillus spp., villus height (duodenum and jejunum), and fewer coliforms (ileum) and Clostridium spp. (ileum). In Experiment 2, 200 weaned piglets were randomly allotted to four treatments. Dietary treatments included basal diet, basal diet supplemented with 3.0 g/kg fermented probiotic product (P), 1.0 g/kg bacteriophage cocktail (B) and combination of 1.0 g/kg bacteriophage cocktail and 3.0 g/kg fermented probiotic product. Pigs fed bacteriophage cocktail diets had greater (P<0.05) overall ADG, gain to feed ratio (G:F), fecal score from day 8 to day 21, and pigs fed bacteriophage cocktail diets had fewer coliforms (ileum) Clostridium spp. (ileum and cecum). Probiotics significantly increased G:F, colonization of Lactobacillus spp. in ileum. At day 35, bacteriophage treatment group showed greater (P<0.05) villus height of the duodenum, but a deeper crypt in duodenum. The present results indicate that the bacteriophage cocktail had a potential to enhance the performance and gut health of weanling pigs, however their combination with probiotics did not show an interaction.     

Intestinal parasite infections in pigs and beef cattle in rural areas of Chungcheongnam-do, Korea

The present study was performed to investigate the infection status of intestinal parasites in pigs and beef cattle in rural areas of Chungcheongnam-do, Korea. From November 2009 to April 2010, a total of 241 fecal samples of pigs and beef cattle (136 and 105, respectively) were examined by direct smear and centrifugal sedimentation methods. The overall positive rates of intestinal parasites among pigs and beef cattle were 73.5% and 4.8%, respectively, and the double-infection rate was 10.3% in pigs. Of 136 specimens from pigs, Balantidium coli, Ascaris suum, and Entamoeba spp. infections were found in 88 (64.7%), 24 (17.6%), and 5 cases (3.7%), respectively. Of 105 beef cattle, Entamoeba spp. infections were detected in 5 cases (4.8%). From these results, it is shown that pigs raised on rural farms in Chungcheongnam-do had a high B. coli infection rate and a moderate A. suum infection rate. These results demonstrate that environmentally resistant cysts or eggs could be widespread on the farms examined, and thus an effective hygienic management system is needed to prevent them from serving as the source of infection for human beings.     

Population history and genomic signatures for high-altitude adaptation in Tibetan pigs

Background

The Tibetan pig is one of domestic animals indigenous to the Qinghai-Tibet Plateau. Several geographically isolated pig populations are distributed throughout the Plateau. It remained an open question if these populations have experienced different demographic histories and have evolved independent adaptive loci for the harsh environment of the Plateau. To address these questions, we herein investigated ~ 40,000 genetic variants across the pig genome in a broad panel of 678 individuals from 5 Tibetan geographic populations and 34 lowland breeds.

Results

Using a series of population genetic analyses, we show that Tibetan pig populations have marked genetic differentiations. Tibetan pigs appear to be 3 independent populations corresponding to the Tibetan, Gansu and Sichuan & Yunnan locations. Each population is more genetically similar to its geographic neighbors than to any of the other Tibetan populations. By applying a locus-specific branch length test, we identified both population-specific and -shared candidate genes under selection in Tibetan pigs. These genes, such as PLA2G12A, RGCC, C9ORF3, GRIN2B, GRID1 and EPAS1, are involved in high-altitude physiology including angiogenesis, pulmonary hypertension, oxygen intake, defense response and erythropoiesis. A majority of these genes have not been implicated in previous studies of highlanders and high-altitude animals.

Conclusion

Tibetan pig populations have experienced substantial genetic differentiation. Historically, Tibetan pigs likely had admixture with neighboring lowland breeds. During the long history of colonization in the Plateau, Tibetan pigs have developed a complex biological adaptation mechanism that could be different from that of Tibetans and other animals. Different Tibetan pig populations appear to have both distinct and convergent adaptive loci for the harsh environment of the Plateau.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-834) contains supplementary material, which is available to authorized users.     

中华真地鳖中肠主要消化酶的活性研究

以中华真地鳖EupolyphagasinensisWalker为研究材料,测定人工饲养和野生地鳖虫在不同生长阶段消化酶的活性以及温度及pH对人工饲养地鳖虫中肠消化酶活性的影响。结果表明,在地鳖虫生长发育过程中,蛋白酶和脂肪酶活性随发育而逐渐增强,淀粉酶活性却随发育而逐渐减弱。在低龄若虫、高龄若虫和成虫阶段,人工饲养地鳖虫蛋白酶活力比野生地鳖虫低,人工饲养地鳖虫淀粉酶和脂肪酶活力比野生地鳖虫高;在30～60℃的范围内,人工饲养地鳖虫蛋白酶、淀粉酶的适宜温度范围为40～50℃,脂肪酶的适宜温度范围为35～45℃;蛋白酶、淀粉酶和脂肪酶的适宜pH范围分别为6.5～7.5,5.6～6.4和7.5～8.5。