Long‐term regeneration of a tropical plant community after sand mining

Sandy coastal plant communities in tropical regions have been historically under strong anthropic pressure. In Brazil, these systems shelter communities with highly plastic plant species. However, the potential of these systems to regenerate without human assistance after disturbances has hardly been examined. We determined the natural regeneration of a coastal sandy plain vegetation (restinga) in Brazil, 16 years after the end of sand removal. We inventoried 38 plots: 20 within a sand‐mined site and 18 in an adjacent undisturbed site. We expected lower diversity values in the sand‐mined site compared to the undisturbed site, but similar species composition between the two sites due to the spatial proximity of the two sites and the high plasticity of restinga species. Species were ranked using abundance and importance value index in both sites, and comparisons were performed using Rényi entropy profiles, rarefaction curves, principal component analysis, and redundancy analysis. Species composition and dominant species differed markedly between the two sites. Bromeliads and Clusia hilariana, well‐known nurse plants, dominated the undisturbed site but were almost absent in the regenerating site. Species richness did not differ between both sites, but diversity was higher in the undisturbed site. Within‐site composition differences in the mined area were associated with field characteristics. Interestingly, species classified as subordinate or rare in the undisturbed site became dominants in the regenerating site. These newer dominants in the sand‐mined site are not those known as nurse plants in other restingas, thus yielding strong implications for restoration.     

Long‐term population dynamics of a coral reef gastropod and responses to disturbance

The age‐specific density of the red‐lipped stromb Strombus luhuanus (Mollusca: Gastropoda) was monitored over 13 years (1981–1993) at four locations on the intertidal reef flat at Heron Island, Great Barrier Reef. Densities were highly variable, but there were persistent, location‐specific differences in population density, age structure and adult body size, the latter indicating that the populations were not extensively linked by adult movement. There was relatively high recruitment at most locations in 1984, 1989 and 1993, each occurring approximately 2 years after El Niño/Southern Oscillation events, although recruit density during these years varied in both space and time. The studied strombs experienced three disturbance events: (i) experimental harvesting at two locations (1984–1985); (ii) siltation from a harbour dredging operation (1987–1988); and (iii) a severe cyclone (1992). Resilience to harvesting at a local scale (0.5–2 ha) was high: density had recovered within a year, due to immigration of adults and older juveniles. Strombus luhuanus responded much more strongly to broad‐scale changes to its environment than to localized harvesting. After dredging, there was a progressive density decline coupled with low recruitment at two locations, and a later decline at a third location, followed by a recruitment‐driven rebound after the cyclone. Generalized environmental effects of siltation and the cyclone were also reflected in substantial changes in algal cover. Long‐term variations in environmental conditions probably cause high temporal variation over large spatial scales through effects on the survival of larvae or recruits. Localized short‐term field monitoring of such species would give a misleading picture of key factors affecting population dynamics.     

Long‐term variation in Amazon forest dynamics

Questions: Have forest dynamics changed significantly in intact Amazon rainforests since the early 1980s? If so, what environmental drivers might potentially be responsible? Location: Central Amazonia, north of Manaus, Brazil. Methods: Within 20 1‐ha plots scattered over ～300 km², all trees (≥10 cm diameter at breast height) were marked, identified, and measured five times between 1981 and 2003. We estimated stand‐level dynamics (mortality, recruitment, and growth) for each census interval and evaluated weather parameters over the study period. Results: We observed a widespread, significant increase in tree mortality across our plots. Tree recruitment also rose significantly over time but lagged behind mortality. Tree growth generally accelerated but varied considerably among census intervals, and was lowest when mortality was highest. Tree basal area rose 4% overall, but stem number exhibited no clear trend. In terms of climate variation, annual maximum and minimum temperatures increased significantly during our study. Rainfall anomalies were strongly and positively associated with ENSO events. Conclusions: The increasing forest dynamics, growth, and basal area observed are broadly consistent with the CO₂ fertilization hypothesis. However, pronounced shorter‐term variability in stand dynamics might be associated with climatic vicissitudes. Tree mortality peaked, and tree recruitment and growth declined during atypically wet periods. Tree growth was fastest during dry periods, when reduced cloudiness might have increased available solar radiation. Inferences about causality are tenuous because tree data were collected only at multi‐year intervals. Mean temperatures and rainfall seasonality have both increased over time in central Amazonia, and these could potentially have long‐term effects on forest dynamics and carbon storage.     

Long‐term effects of prairie restoration on plant community structure and native population dynamics

The key to restoring degraded grassland habitats is identifying feasible and effective techniques to reduce the negative impacts of exotic species and promote self‐sustaining native populations. It is often difficult to extend monitoring of restoration efforts to evaluate long‐term success, but doing so is essential to understanding how initial outcomes change over time. To assess how initial treatment effects persist, we revisited degraded patches of Pacific Northwest prairie habitat 6 years after experimental restoration efforts ceased. We evaluated plant community composition to determine the lasting effects of supplemental native seeding and disturbance treatments (burning, mowing, and herbicide to reduce exotic species). We tracked the persistence of seeded species and measured spread of their populations to evaluate suitability of species for restoration and the ability of the habitat to support native plant populations. We found that plots that received supplemental seeding continued to exhibit higher richness of native species than those left unseeded, and that both seeding and disturbance treatments could positively influence native species abundance over the long term. The initially observed effects of disturbance treatments on reducing exotic grass abundance had diminished, highlighting the importance of long‐term monitoring and ongoing control of exotic species. Nevertheless, these treatments significantly influenced the population trajectories of 4 out of 8 seeded native species. There was evidence of spatial advance of most seeded species. Results from extended monitoring confirm that dispersal limitation of native species and difficulties maintaining the reduction of exotic grasses continue to be major barriers to success in restoration of invaded grasslands.     

Long‐term population dynamics of a migrant bird suggests interaction of climate change and competition with resident species

The separation of abiotic and biotic factors affecting populations and communities is an important step in understanding how climate change can influence ecological processes, but quantifying their relative contribution to community changes is a challenge. We assessed the effect of temperature and species interactions on the population dynamics of a forest bird community with a hierarchical dynamic population model in a Bayesian framework. We used a long‐term time‐series (1956–2012) of four secondary cavity‐nesting birds with similar food and nesting requirements but different migration habits, to analyse the effects of the four species population size and the local weather fluctuations on each species’ population dynamics. We found clear evidence of a negative effect of two resident species (blue tit and great tit) on a long‐distance migrant (pied flycatcher). Among the residents we only found a competition effect of the great tit on the marsh tit. The birds showed opposite responses to weather: the pied flycatcher favoured colder springs whereas the blue tit and great tit favoured warmer springs. Although alternative mechanisms cannot be ruled out, our results suggest that the resident species (blue tit and great tit) could adjust to increasing spring temperature while the migrant species (pied flycatcher) could not, leading progressively to the exclusion of the pied flycatcher from the area. These results point out the potential role of competitive interactions by providing insightful clues, call for refined research, and support recent efforts to include population dynamics in species distribution models.     

Long‐term dynamics of the long‐lived conifer Libocedrus bidwillii after a volcanic eruption 2000 years ago

Abstract. Question: Following a volcanic eruption of ca. 232 AD, known as the Taupo eruption, the emergent conifer Libocedrus bidwillii expanded on Mt. Hauhungatahi, upwards above the current tree‐line, and downwards into the mixed montane forest. We ask: (1) if current age‐structures at different altitudes support the patterns predicted by the temporal stand replacement model, with cohort senescence and progressively depleting recruitment at ca. 600 year intervals (average cohort age) since the eruption: and (2) if the case history of the population sheds light on the persistence of mixed conifer‐hardwood forests in general. Location: Mt. Hauhungatahi, Tongariro National Park, New Zealand. Methods: The species composition and structure of seven stands covering the altitudinal range of Libocedrus bidwillii, were quantified. Libocedrus trees were cored, and regression equations used to predict ages. Cohorts were identified. Results: Libocedrus densities and basal areas, and the abundance of seedlings and saplings, peaked at different altitudes. At the species’lower limits there has been no recruitment for ca. 550 years, and the angiosperm Weinmannia racemosa has gained dominance. In the tree line and sub‐alpine forest stands, a low level of continuous regeneration has been boosted by periodic cohort recruitment following exogenous disturbances. Conclusions: In the montane zone, the Libocedrus age structure, and its replacement by Weinmannia, are consistent with a model of depleting cohorts separated by ca. 600 years since the Taupo eruption. At higher altitudes more frequent disturbances and reduced competition have allowed Libocedrus persistence. Comparison with other studies suggests long‐term relationships between gymnosperms and angiosperms are mediated by the scale and frequency of disturbance.     

Long‐term and interactive effects of different mammalian consumers on growth,survival, and recruitment of dominant tree species

Throughout the world, numerous tree species are reported to be in decline, either due to increased mortality of established trees or reduced recruitment. The situation appears especially acute for oaks, which are dominant features of many landscapes in the northern hemisphere. Although numerous factors have been hypothesized to explain reductions in tree performance, vertebrate herbivores and granivores may serve as important drivers of these changes. Here, using data from 8‐ and 14‐year‐old exclosure experiments, we evaluated the individual and interactive effects of large and small mammalian herbivores on the performance of three widespread oak species in California—coast live oak (Quercus agrifolia), California black oak (Q. kelloggii), and Oregon white oak (Q. garryana). Although impacts varied somewhat by species and experiment, herbivory by black‐tailed deer (Odocoileus hemionus columbianus) reduced the height and survival of juvenile coast live oaks and altered their architecture, as well as reduced the abundance of black oak seedlings, the richness of woody species and the cover of nonoak woody species. Small mammals (Microtus californicus and Peromyscus maniculatus) had even more widespread effects, reducing the abundance of black oak seedlings and the height and cover of all three oak species. We also detected numerous interactions between small mammals and deer, with one herbivore having positive or negative effects on oak abundance and cover when the other herbivore was either present or absent. For example, deer often had negative effects on seedling abundance only when, or even more so when, small mammals were present. In summary, mammalian consumers play crucial roles in limiting oak recruitment by reducing seedling abundance, maintaining trees in stunted states, and preventing them from reaching sapling stages and becoming reproductive. Interactions between large and small mammals can also alter the intensity and direction of their effects on trees.     

Post‐fire carbon dynamics in the tropical peat swamp forests of Brunei reveal long‐term elevated CH4 flux

Tropical peatlands hold about 15%–19% of the global peat carbon (C) pool of which 77% is stored in the peat swamp forests (PSFs) of Southeast Asia. Nonetheless, these PSFs have been drained, exploited for timber and land for agriculture, leading to frequent fires in the region. The physico‐chemical characteristics of peat, as well as the hydrology of PSFs are affected after a fire, during which the ecosystem can act as a C source for decades, as C emissions to the atmosphere exceed photosynthesis. In this work, we studied the longer‐term impact of fires on C cycling in tropical PSFs, hence we quantified the magnitude and patterns of C loss (CO₂, CH₄ and dissolved organic carbon) and soil‐water quality characteristics in an intact and a degraded burnt PSF in Brunei Darussalam affected by seven fires over the last 40 years. We used natural tracers such as ¹⁴C to investigate the age and sources of C contributing to ecosystem respiration (R_eco) and CH₄, while we continuously monitored soil temperature and water table (WT) level from June 2017 to January 2019. Our results showed a major difference in the physico‐chemical parameters, which in turn affected C dynamics, especially CH₄. Methane effluxes were higher in fire‐affected areas (7.8 ± 2.2 mg CH₄ m^?2 hr^?1) compared to the intact PSF (4.0 ± 2.0 mg CH₄ m^?2 hr^?1) due to prolonged higher WT and more optimal methanogenesis conditions. On the other hand, we did not find significant differences in R_eco between burnt (432 ± 83 mg CO₂ m^?2 hr^?1) and intact PSF (359 ± 76 mg CO₂ m^?2 hr^?1). Radiocarbon analysis showed overall no significant difference between intact and burnt PSF with a modern signature for both CO₂ and CH₄ fluxes implying a microbial preference for the more labile C fraction in the peat matrix.     

Long‐term non‐equilibrium dynamics of insular floras: a 17‐year record

Aim To document long‐term rates of immigration, extinction and turnover in insular floras and evaluate the relative impacts of recent hurricane activity and climate change. Location Three archipelagos of small islands, in the Exuma Cays, Andros and Abacos, Bahamas. Methods I surveyed the floras of 194 vegetated islands in three archipelagos over several multi‐year periods, spanning up to 17 years. Changes in abundance (foliar cover) of persistent populations were measured on a subset of 14 islands in the Exuma Cays over a 9‐year period. Results Rates of plant turnover were generally low compared with other organisms, but varied among archipelagos and time periods. Turnover rates were usually higher in the second decade of this study, and extinction rates were often dramatically higher than immigration rates in the second decade, resulting in overall decreases in species richness. Turnover did not differ significantly among island types based on generalized location and surrounding water depths, and extinctions were not more likely to occur on more exposed islands. The abundance (foliar cover) of populations that did not go extinct decreased steadily over the second decade of this study, indicating, along with higher extinction rates, a generalized decline in these insular floras. Main conclusions Although some islands may have been at or near a state of dynamic equilibrium in the first decade of this study, average species richness declined in all three archipelagos during the second decade, when extinctions greatly outnumbered immigrations. Four major hurricanes affected the study archipelagos in the second decade of this study, although the available evidence suggests that the hurricanes were not directly responsible for the declines. Indirect effects of hurricanes such as increased herbivory and possible decreased nutrient availability, along with a long‐term (25 years) increase in temperature and decline in rainfall are likely contributing factors.     

Long‐term tree fern dynamics linked to disturbance and shade tolerance

Question: Do New Zealand tree ferns have recognizable shade tolerance niches? Location: Lowland temperate rain forest of New Zealand (41°20′S, 174°58′E). Methods: Growth, death and recruitment of five tree fern species were estimated from a 38‐year record of stem heights, collected within a 2.25‐ha block of forest, and electron transport rates (ETR) of photosystem II of fronds were measured. Results: Two species of Cyathea were comparatively common (603 and 351 stems in total) and two were comparatively rare (155 and 17 stems in total) on the site. The common species had lower rates of growth, recruitment and mortality than the rare species, had skewed age distributions typical of shade‐tolerant species and were probably recruited soon after a catastrophic earthquake in 1855. The two rare species were failing to recruit under closed forests; their age distributions indicated that all had regenerated long after the earthquake. ETR were higher for faster‐growing than for the shade‐tolerant species. A tree fern that regenerates vegetatively from aerial buds, Dicksonia squarrosa, was common on the site (361 stems in total). Its age distribution suggested it was relatively shade tolerant, but its mortality and recruitment rates were much higher than those of the two shade‐tolerating Cyathea species, suggesting that this multi‐stemmed species functions differently from the monopodial Cyathea species. Conclusions: New Zealand Cyathea tree ferns occupy distinct niches along a shade tolerance spectrum and their relative abundances are strongly influenced by disturbance history. The study provides evidence that tree fern species differ strongly in their responses to canopy disturbance and are not ecologically equivalent.     

Long‐term dynamics in a planted conifer forest with spontaneous ingrowth of broad‐leaved trees

Question: What are the age structure and growth trends in a 160‐year old not‐managed Pinus sylvestris plantation with spontaneous development of Quercus robur and can recruitment of Q. robur be related to the radial growth pattern of the P. sylvestris overstorey? Location: Mattemburgh forest reserve, The Netherlands. Methods: Throughout the forest, we sampled 103 oaks and 102 pines with an increment corer. Tree ring widths were measured and cross‐dated to produce mean ring width series. With these data we determined tree ages, investigated growth trends and identified growth releases and suppressions. Results: Q. robur is uneven‐aged: some individuals recruited around 1925, but most reached coring height in the 1940s. The latter recruitment period related to a transition from stressed to released growth of the overstorey pines, growth releases of the oldest Q. robur and occurrence of P. sylvestris regeneration. No further recruitment has taken place since 1950. Conclusions: This study demonstrates that an old pine plantation can develop spontaneously into well‐structured pine forest with an understorey of oak and pine. However, understorey recruitment in these forest types is not a continuous process and in this case a single allogenic canopy disturbance triggered its establishment.     

Long‐term productivity of Mediterranean herbaceous vegetation after a single phosphorus application

Question: What is the mechanism that underlies long‐term maintenance of high herbaceous productivity after a single application of phosphorus (4.5 gP m^?2 and 9 gP m^?2) in a hilly Mediterranean environment in a phosphorus‐deficient ecosystem? Location: Inland, 15 km E of the Mediterranean coast, W Galilee, Israel (35°15′E, 33°01′N; 500 m asl). Methods: The experiment was established in 1988. Multi‐year data on above‐ground biomass, botanical composition, P content of vegetation and soil, and the grazing management context of the experiment were integrated to construct a feasible account of the P dynamics of the ecosystem. Results: The productivity of the herbaceous component already responded to P application in the first year. The effect on the shrubby component of the ecosystem was marginal. The available (bicarbonate extractable) P in the upper soil layer peaked in the year after application of P and then declined to the original level within 7 years. Despite the decline in available soil P, a high, fluctuating level of herbaceous biomass production was maintained for 20 years. Legume species (Fabaceae) became a prominent constituent of the herbaceous vegetation after the P pulse. Conclusions: The long‐term shift in productivity of the herbaceous component of the grazed ecosystem was triggered by a nutritional pulse that induced a feedback loop based on changes in botanical composition of the herbaceous vegetation, the animal–vegetation interaction, grazing and supplementary feeding regimen of the cattle.     

Recovery of a tropical rain forest after hurricane damage

More than a year after Hurricane Hugo damaged a Puerto Rican tropical rain forest, recovery of the forest was assessed by observing resprouting of damaged trees in eleven transects which were established before the hurricane in 1989. In each transect, I relocated and identified standing trees and observed if they were resprouting after injury. I found that resprouting was rapid and depended on species. There was no significant relationship between sprouting and diameter classes of trees. This study suggests that resprouting of damaged trees plays major roles in the recovery of the tropical forests which are prone to hurricanes and are in non-equilibrium state.     

Molecular dynamics simulations reveal that apo‐HisJ can sample a closed conformation

The Escherichia coli histidine binding protein HisJ is a type II periplasmic binding protein (PBP) that preferentially binds histidine and interacts with its cytoplasmic membrane ABC transporter, HisQMP₂, to initiate histidine transport. HisJ is a bilobal protein where the larger Domain 1 is connected to the smaller Domain 2 via two linking strands. Type II PBPs are thought to undergo “Venus flytrap” movements where the protein is able to reversibly transition from an open to a closed conformation. To explore the accessibility of the closed conformation to the apo state of the protein, we performed a set of all‐atom molecular dynamics simulations of HisJ starting from four different conformations: apo‐open, apo‐closed, apo‐semiopen, and holo‐closed. The simulations reveal that the closed conformation is less dynamic than the open one. HisJ experienced closing motions and explored semiopen conformations that reverted to closed forms resembling those found in the holo‐closed state. Essential dynamics analysis of the simulations identified domain closing/opening and twisting as main motions. The formation of specific inter‐hinge strand and interdomain polar interactions contributed to the adoption of the closed apo‐conformations although they are up to 2.5‐fold less prevalent compared with the holo‐closed simulations. The overall sampling of the closed form by apo‐HisJ provides a rationale for the binding of unliganded PBPs with their cytoplasmic membrane ABC transporters. Proteins 2014; 82:386–398. © 2013 Wiley Periodicals, Inc.     

Long‐term dynamics of winter and summer annual communities in the Chihuahuan Desert

Abstract. Winter and summer annuals in the Chihuahuan Desert have been intensively studied in recent years but little is known about the similarities and differences in the dynamics between these two communities. Using 15 yr of census data from permanent quadrats, this paper compared the characteristics and temporal dynamics of these two distinct, spatially co‐existent but temporally segregated communities. Although the total number of summer annual species recorded during our 15 yr of observation was higher than winter annuals, the mean number of species observed each year was higher in the winter community. The winter community exhibited lower temporal variation in total plant abundance and populations of individual species, lower species turnover rate and higher evenness than the summer community. The rank abundances of species in winter were significantly positively correlated for a period of up to 7 yr while in summer significant positive correlations in rank abundance disappeared after 2 to 3 yr. The higher seasonal species diversity (i.e. number of species observed in each season) in winter rather than the overall special pool (over 15 yr) may be responsible for the greater community stability of winter annuals. The difference in long‐term community dynamics between the two communities of annual plants are likely due to the differences in total species pool, life history traits (e.g. seed size), and seasonal climatic regimes.     

Long‐term survival of humpback whales radio‐tagged in Alaska from 1976 through 1978

Invasive tags designed to provide information on animal movements through radio or satellite monitoring have tremendous potential for the study of whales and other cetaceans. However, to date there have been no published studies on the survival of tagged animals over periods of years or decades. Researchers from the National Marine Mammal Laboratory and the Woods Hole Oceanographic Institution tracked five humpback whales with implanted radio tags in southeastern Alaska in August 1976 and July 1977, and tracked two humpback whales in Prince William Sound, Alaska, in June 1978. All seven of these individually identified humpback whales were resighted at least 20 yr after first being tagged, and five of the seven have been observed for more than 30 yr; some of them are among the most resighted humpback whales in the North Pacific. Photos of tagging sites taken during and subsequent to tagging operations show persistent but superficial scarring and no indication of infection. These pioneering field studies demonstrated both long‐term survival of the whales and the short‐term effects of deploying radio tags, which at the time were larger and more invasive than those typically used today.