New automated fluorometric peptide microassay for carnosine in mouse olfactory bulb

A procedure for assaying peptides at the picomole level in tissue extracts has been developed and used to measure the dipeptide carnosine in mouse olfactory bulb. In this procedure the tissue extract is reacted with 2-methoxy-2,4-diphenyl-3(2H)-furanone (MDPF), and the resultant fluorophors are resolved on a high performance reverse-phase column. Quantitation is performed in a filter fluorometer equipped with a flow cell. Carnosine was found to be present at a level of 1.93 ± 0.44 nmol/mg of tissue (mean + SD of 11 samples), in agreement with previous findings by other methods.     

Determination of protein synthesis initiation factor levels in crude lysates of Escherichia coli by a sensitive radioimmune assay.

Antisera specific for protein synthesis initiation factors IF1, IF2, and IF3 were prepared by immunizing rabbits. When crude cell lysates are analyzed by double immunodiffusion or by immunoelectrophoresis, each antiserum forms a single precipitin line antigenically identical to its cognate factor. The antisera do not crossreact with other initiation factors or with ribosomal proteins. A radioimmune assay was developed for each initiation factor by using the specific antisera and radioactive factors prepared by reductive alkylation with [¹⁴C]formaldehyde. The assays detect as little as 10 to 30 ng of factor. Initiation factor concentrations were measured in crude Escherichin coli MRE600 extracts prepared from cells grown exponentially in a rich medium. The three initiation factors are present in approximately stoichiometric amounts and comprise about 1% of the cell protein. The molar ratio of initiation factors to ribosomes is about 0.15, which corresponds to the concentration of native ribosomal subunits.     

Base-pairing between distant regions of the Escherichia coli 16 S ribosomal RNA in solution.

Intramolecular crosslinks have been introduced into Escherichia coli 16 S ribosomal RNA in aqueous solution by irradiation in the presence of hydroxymethyl-trimethylpsoralen. When the crosslinked RNA is denatured and examined in the electron microscope the most striking features are a variety of large open loops. In addition, because the crosslinked molecules are shortened compared to non-crosslinked molecules, there are likely to be small hairpins not resolved by the present technique. The sizes and positions of 11 loop classes have been determined and oriented on the molecule. The frequency of occurrence of the different classes of loops depends on the crosslinking conditions. When the crosslinking is done in solutions containing Mg²⁺, at least four of the loop classes appear with greater frequency than they do in 3.5 mm-NaCl. The loops presumably arise because complementary sequences separated by long intervening regions are being crosslinked. These base-pairing interactions between residues distant in the primary structure appear to be prominent features of the secondary structure of rRNA in solution.     

A near-infrared method for studying hydration changes in aqueous solution: Illustration with protease reactions and protein denaturation

Proteins undergoing protease reactions, heat denaturation, or interactions with sodium dodecyl sulfate (SDS) were used to demonstrate the effectiveness of a near-infrared method for the quantitative study of changes in hydration or water binding during such processes. The spectra of different proteins showed that the liberation of $\text{COO}{}^{\mathrm{?}}\text{and NH}{}_3{}^{\mathrm{+}}$ groups during a protease reaction is associated with a large increase in hydration and excluded volume. On the basis of experiments with model compounds, other spectral changes, including development of continuum absorbance between 1.55 and 1.85 μm and a band with a peak near 2.1 μm, were also attributed to the liberation of these groups. After heat denaturation or in the presence of SDS, the rate of proteolytic hydrolysis was markedly increased, consistent with the view that some preliminary denaturation is necessary for protease activity. The validity of the hydration changes calculated for protease reactions was supported by model studies with l-lysine, and with poly-l-lysine before and after hydrolysis. The near-infrared spectrum of the protein substrate with no added protease was largely unaffected by heat treatment alone, indicating that the hydration as such was not changed to a large extent by the structural modifications of denaturation. In contrast to the protease reaction, the interactions between SDS and the proteins resulted in a decrease in hydration. Results of this paper are compared with those obtained from other methods. Some unique advantages of the near-infrared method for the study of hydration changes during reactions in aqueous solution are described.     

Purification of thymidine kinase by affinity chromatography with an enzyme inhibitor as the ligand

An affinity column for the purification of thymidine kinase is described. The ligand in this column is a glycoprotein isolated from rat kidney. This glycoprotein inhibits phosphorylation of thymidine in cultured cells and in a cell-free assay system. With an affinity column containing the glycoprotein as a ligand, a 24-fold purification of thymidine kinase from an ammonium sulfate fraction of a crude tissue extract can be obtained. Thymidine kinase eluted from the affinity column migrates as one major band on polyacrylamide and as one diffuse major band on sodium dodecyl sulfate-polyacrylamide. The affinity column, with thymidine kinase bound to the inhibitor, can also be used as an assay system. When the glycoprotein is covalently attached to Sepharose, it retains its binding capacity for thymidine kinase but has apparently lost its ability to inhibit the enzyme. Thymidine kinase eluted from the affinity column is again sensitive to the glycoprotein. It seems to be a carbohydrate moiety of the glycoprotein that is responsible for the inhibition.     

A mutant of Anabaena sp. CA with oxygen-sensitive nitrogenase activity.

Studies on the O₂ protection mechanism for nitrogenase in a mutant (PM10) of $\text{Anabaena}$ sp. CA indicated that the ability to protect nitrogenase from O₂ was functionally impaired. Growth rates of PM10 were substantially improved when cells were cultured under microaerobic conditions. Nitrogenase activity was totally inhibited by exposure to O₂ for 30 min; partial restoration of activity was attained when cell suspensions were subsequently made microaerobic. Experiments in which induction of nitrogenase activity was followed indicated that the synthesis of the O₂ protection mechanism was temporally separated from synthesis of heterocysts and nitrogenase.     

Structural features of naegeli amylodextrin as indicated by enzymic degradation

Naegeli amylodextrin is the insoluble residue remaining after prolonged treatment of native starch granules with strong aqueous acid. The Naegeli amylodextrin from waxy maize starch was separated by gel chromatography on Sephadex G-50 into three fractions. Although the fractions were heterogeneous, their average structures were examined by enzymic degradation with porcine-pancreactic alpha amylase, beta-amylase, and pullulanase. The results show that Fraction I (highest molecular weight) has complex branching, Fraction II (major component, d.p. ～25) contains about one branch per molecule, and Fraction III (d.p. ～12) is mostly linear. Formation of these acid-resistant fractions may be explained as arising from a cluster model of amylopectin in which the outer chains are in a double-helical, crystalline arrangement.     

Electrophoretic mobility of membrane fragments on a sucrose gradient. Application to isolated purple membrane fragments from Halobacterium halobium.

A simple technique for electrophoresis of particles is presented. The technique is based on running charged particles in a vertical tube along a sucrose gradient (20–50%). Purple membrane fragments from Halobacterium halobium were used to demonstrate the method. The migration of the fragments was linear with time in the region of 20 to 40% sucrose. Electrophoresis of purple membrane fragments under illumination, darkness, or darkness interrupted by short periods of illumination showed that at pH 4.5 the dark-adapted form of bacteriorhodopsin is less negative than its light-adapted form. At pH 6.5 and 8.5 no difference between these forms could be detected.     

Determination of 3-methoxy-4-hydroxyphenylglycol in urine by high-performance liquid chromatography with amperometric detection

A reversed-phase high-performance liquid chromatographic method has been used for the quantitative determination of 3-methoxy-4-hydroxyphenylglycol (MHPG) in urine. After incubation with glusulase, free MHPG is extracted into ethyl acetate and further isolated by a combination of thin-layer chromatography (TLC) and high-performance liquid chromatography (HPLC). The addition of amperometric detection provides increased sensitivity to a highly specific assay.     

The regional metabolism of 5-hydroxytryptamine in mouse brain in vitro.

The relative rates of formation of 5-hydroxytryptophol (5-HTOL) and 5-hydroxyindoleacetic acid (5-HIAA) from exogenous 5-hydroxytryptamine, showed regional variations when examined in homogenates of seven separate areas of mouse brain. 5-HTOL production was highest in the cerebellum, and lowest in the corpus striatum, whereas the production of 5-HIAA was greatest in the hypothalamus. Addition of NADPH was shown to increase the formation of the alcohol catabolite in whole brain homogenates. The production of 5-HTOL decreased in the brain homogenates of mice which had previously been injected with phenytoin sodium or oxypertine, with the latter also causing a fall in overall 5-HT metabolism.     

A sensitive atomic fluorescence system for metals in biological systems

An atomic fluorescence spectrometric system for trace elemental determinations in biological samples is described. A heated graphite atomization furnace is used, with continuous sample introduction. Carbonic anhydrase and DNA dependent RNA polymerase enzymes are employed as application models, and accurate Zn determinations at the 10^?7m level are made on enzyme samples of 0.1 mg and less with a precision of 1–2%. The instrumentation is relatively simple, the system is versatile and has excellent stability.     

Modification of ribulose bisphosphate carboxylase from Rhodospirillum rubrum with tetranitromethane.

The synthesis of DL-5,5′-dihydroxyleucine, by diborane reduction of N-phaloyl-DL-γ-carboxyglutamic acid-α-methylester, and the chromatographic and spectral characteristics of this amino acid are reported.     

Base-group specificity at the primary recognition site of ribonuclease T1 for minimal RNA substrates

Kinetic studies on the RNase T₁-catalyzed transesterification of 12 dinucleoside monophosphates, N_p¹N² (N¹ = A, C, and U; N² = A, C, G, and U) at pH 5, 25 °C, and 0.2 m ionic strength, revealed that the catalytic efficiency ($\text{k}{}_{\mathrm{<mtext>cat</mtext>}}\text{K}{}_{\mathrm{m}}$) for GpN substrates (H. L. Osterman, and F. G. Walz, Jr., 1978, Biochemistry, 17, 4142) was ~10⁶-fold greater than corresponding ApNs and at least 10⁸-fold greater than corresponding CpNs and UpNs. The catalytic activity with ApN substrates survives phenol extraction which indicates (along with other criteria) that it is intrinsic to RNase T₁ and is not due to trace contamination by other nucleases. Circumstantial evidence is presented which suggests that homologous GpN and ApN substrates bind productively at different sites on the enzyme. The results of steady-state kinetic studies of RNase T₁ with IpNs (N = C and U) were compared with those for GpNs and indicated that the primary effect of the guanine 2-NH₂ group is to enhance substrate binding at the primary recognition site by ~2.6 kcal/mol. Values of ($\text{k}{}_{\mathrm{<mtext>cat</mtext>}}\text{K}{}_{\mathrm{m}}$) showed the order NpC > NpU (N = A, G, and I) which evidences the existence of a subsite for the leaving nucleoside group that prefers cytidine: interactions at this subsite are reflected in k_cat rather than K_m.     

Relationship between coronary flow and adenosine release in reactive hyperemia

A linear relationship was found between coronary flow and adenosine release during the course of reactive hyperemia. Isolated guinea pig heart was perfused with a modified Krebs Ringer bicarbonate buffer containing 2.0 mM pyruvate. Hyperemia was induced with 30, 60 and 90-second coronary occlusions. The hyperemic response was divided into three consecutive 13-second intervals (I, II and III), and perfusate efflux from coronary circulation was collected during the last 10 seconds of each interval for adenosine assay using the HPLC. The data show a control flow of 3.13 +/- 0.4 ml/min/g and adenosine release of 66 +/- 4 pmoles/min/g. Flow increased by 99, 38 and 23% at I, II and III, respectively following 30-second occlusion, whereas adenosine release increased by 241, 132 and 91% for I, II and III. A 60-second occlusion increased the flow by 125, 64 and 34% with a simultaneous increase in the release of adenosine by 464, 155 and 133%, respectively, for I, II and III. Marked elevations in flow (165, 92 and 59%) and in adenosine release (659, 194 and 176%) for I, II and III were observed following 90-second occlusion. The linear relationship between coronary flow and adenosine release had r values of 0.84, 0.74 and 0.88 for 30, 60 and 90-second occlusions, respectively. This study quantifies the relationship between coronary flow and adenosine release during the course of reactive hyperemia. It also suggests that on a percent basis, adenosine contributes equally to the hyperemia at I, II and III.     

Hyaluronidase activity during thyroxine-induced tadpole metamorphosis.

Immersion of Rana catesbeiana tadpoles in 10^?7Ml-thyroxine gives rise to increases in brain and backskin hyaluronidase activity. After 10 days of immersion, there is a 1.9-fold increment in brain enzyme activity and a 2.5-fold increment in the backskin. The rise in activity occurs mainly between the seventh and tenth days of treatment. During the 10-day treatment, hyaluronate content in the backskin decreases to 22% of the control level while sulfated glycosaminoglycan increases markedly, but no significant change in brain glycosaminoglycan composition occurs. The onset of major metamorphic events was observed between the seventh and tenth days of immersion in thyroxine.     

Characterization and localization of the naturally occurring cross-links in vaccinia virus DNA

The vaccinia virus genome is a single, linear, duplex DNA molecule whose complementary strands are naturally cross-linked. The molecular weight has been determined by contour length measurements from electron micrographs to be 122 ± 2.2 × 10⁶. Denaturation mapping techniques indicate that the nucleotide sequence arrangement of the DNA is unique. Two forms of cross-linked vaccinia DNA were observed in alkaline sucrose gradients. The relative S-values of the two cross-linked species were appropriate for a single-stranded circle and a linear single strand, each with a molecular weight twice that expected for an intact, linear, complementary strand of vaccinia DNA. The fraction of sheared vaccinia DNA able to “snap back” after denaturation suggested a minimum of two crosslinks per molecule. Full-length single-stranded circles were observed in the electron microscope after denaturation of vaccinia DNA. Partial denaturation produced single-stranded loops at the ends of all full-length molecules. Exposure of native vaccinia DNA to a single strand-specific endonuclease isolated from vaccinia virions caused disruption of the cross-links, as assayed by alkaline sedimentation, and produced free single-strand ends when partially denatured DNA was observed in the electron microscope. We conclude that vaccinia DNA contains two cross-links, one at or near (within 50 nucleotides) each end in a region of single-stranded DNA. Two models for the cross-links are presented.     

An analytical study of catecholamine metabolites by phosphorimetry

Phosphorescence excitation and emission spectra, lifetimes, phosphorimetric analytical curves, and limits of detection have been determined at 77°K in methanol: water 10:90 solution for tyrosine and 11 catecholamine metabolites. The influence of pH on the phosphorescence efficiency is shown to be valuable for the identification of phenolate species and enhancement of sensitivity of the method. Strongly alkaline solution (pH ≥ 10) are the most suitable solvent for the phosphorimetric studies of nondegradable catechnolamine metabolites (3-methoxy-4-hydroxy derivatives). Low limits of detection between 0.2 and 0.02 μg/ml are obtained. For most of the compounds, phosphorimetry is shown to give better sensitivity and accuracy than the classical fluorometric assays of catecholamines.     

Non-random loss of uninterrupted ribosomal DNA repeating units upon induction of a bobbed mutation

To investigate the physical organization of ribosomal RNA genes of two bobbed (bb) loci carried by the Dp(1;f)122 free duplication, a wild type and a deleted one derived from it, genomic DNAs from XXNO-/Dp122bb+ and XXNO-/Dp122bb adult females were analyzed by restriction enzyme digestions. We found that in the bb mutant there was a loss of uninterrupted genes, while genes interrupted by type I and type II insertions remained apparently unchanged. This is an indication that at least in this wild type bb+ locus, carried by the 122 free duplication, the different repeating units are not distributed randomly. In fact, after digestion of the rDNA carried by the bb+ duplication with the enzyme BamHI that cuts only in type I insertions, we have obtained long uncleaved fragments of DNA containing uninterrupted genes.