Beneficial endophytic microorganisms of Brassica – A review

Brassica species display enormous diversity and subsequently provide the widest assortment of products used by man from a single plant genus. Many species are important for agriculture, horticulture, in bioremediation, as medicines, soil conditioners, composting crops, and in the production of edible and industrial oils such as liquid fuels and lubricants. Many wild Brassica relatives possess a number of useful agronomic traits, including beneficial microbial endophytes that could be incorporated into breeding programs. Endophytes of Brassica, and/or their metabolites, have been demonstrated to improve and promote plant growth; increase yield; reduce disease symptoms caused by plant pathogens; reduce herbivory from insect pests; remove contaminants from soil; improve plant performance under extreme conditions of temperature and water availability; solubilise phosphate and contribute assimilable nitrogen to their hosts. Brassica napus (oilseed rape) and Brassica oleracea var. botrytis (broccoli and cauliflower) are the most economically important species of Brassica worldwide. These commercial crops are attacked by a wide range of pathogens and insect pests that are responsible for millions of dollars in lost revenue, with current control options offering little mitigation. No alternative control products are available for the Brassica industry, although it has been well documented in the literature that the use of endophytic microorganisms can offer beneficial traits to their host plants, including pest and disease resistance. The aim of this review is to describe the literature concerning beneficial microbial endophytes and their prospects to enhance or provide additional traits to their Brassica host species.     

Assays of the production of harmful substances by genetically modified oilseed rape (<Emphasis Type="Italic">Brassica napus</Emphasis> L.) plants in accordance with regulations for evaluating the impact on biodiversity in Japan

Environmental risk assessment of transgenic crops is implemented under the Cartagena Protocol domestic law in accordance with guidelines for implementing the assessment established by the Ministry of Agriculture, Forestry and Fisheries (MAFF) and the Ministry of Environment (MOE) in Japan. Environmental risk assessments of transgenic crops are implemented based on the concept of ‘substantial equivalence’ to conventional crops. A unique requirement in Japan to monitor the production of harmful substances, or allelochemicals, is unparalleled in other countries. The potential for allelochemicals to be secreted from the roots of transgenic crops to affect other plants or soil microflora or for substances in the plant body to affect other plants after dying out must be evaluated. We evaluated the allelopathic potential of seven transgenic oilseed rape (Brassica napus L.) lines that express glufosinate tolerance in terms of substantial equivalence to conventional oilseed rape lines, and established evaluation methods. Our results indicate no potential production of allelochemicals for any of the seven transgenic oilseed rape lines compared with conventional oilseed rape lines.     

Integrated Control of Clubroot

Clubroot caused by Plasmodiophora brassicae affects the Brassicaceae family of plants, including many important vegetable and broadacre crops. In the last 20 years increasing intensity of vegetable production and the rapid growth in popularity of oilseed rape as a broadacre or arable break crop have increased the severity of clubroot and the area of land affected in both the vegetable and broadacre industries. Resting spores of P. brassicae are long-lived in soil, but the number of spores can be reduced through crop rotation, fallowing, chemical application, and management of brassica weeds. The host-pathogen system is responsive to a range of control measures, including calcium and boron amendments, manipulation of soil pH, and fungicide application. Molecular tests have been developed to predict disease and resistant cultivars are available for some crops. Increasingly, a multifaceted or integrated approach is being used to manage clubroot. This approach has been particularly successful in vegetable production systems.     

不同土壤水分状况下施硼对油菜硼吸收、利用的影响

1　引　　言我国是油菜生产大国 ,也是一个土壤缺Ｂ面积较大的国家 .由于油菜缺Ｂ问题突出 ,施用Ｂ肥已成为提高油菜产量、改善品质的重要措施[2 ,3 ,11] .但是 ,Ｂ肥的施用不但存在成本高、难度大、效率低的问题 ,而且也存在造成环境污染的可能性[9] .研究表明[8,10 ] ,不同油菜品种对缺Ｂ的反应存在基因型差异 ,因此 ,筛选、培育Ｂ营养高效基因型油菜以适应缺Ｂ土壤环境是解决油菜缺Ｂ问题的最有效途径之一 .植物对土壤中Ｂ的吸收、运输及利用因土壤水分状况而异[4 ,5] .研究不同水分条件下尤其是干旱情况下Ｂ素营养对油菜Ｂ营养效率的影…     

Allelopathy as a Tool in the Management of Biotic Resources in Agroecosystems

In modern agriculture, natural plant communities may be replaced by a single crop species. Weeds, some microorganisms, and viruses, as well as some herbivores are organisms that should be eliminated. Pesticides and fertilizers not only affect the pests and crops, but soil, non-pest species, water, food, and humans. In traditional agriculture weeds are components with an important ecological role in the maintenance of the system. Some weeds have been used as tools to control the growth of other weeds in traditional agroecosystems. Researchers on sustainable and organic agriculture get valuable information from traditional agriculture and currently are conducting research on plant breeding, soil fertility and tillage, crop protection, and cropping systems. Allelopathy and chemical ecology are directly involved in each of these fields and can play an important role in crop productivity, conservation of genetic diversity, and maintenance of ecosystems stability. Allelopathy has been shown to be related with problems of chemical interference between crops and weeds, crops and crops, toxicity of crops and weeds residues, and/or crops and weeds exudates. Problems of autotoxicity, orchard replanting, and forest regeneration are also referred as allelopathic. Allelopathy is strongly coupled with other stresses of the environment, including insects and disease, temperature extremes, nutrient and moisture variables, radiation, and herbicides. These stress conditions often enhance allelochemical production and increase the potential for allelopathic interference. Allelopathy offers potential for weed control through the production and release of allelochemicals from plants. Allelochemicals may impact the availability of nutrients through effects on the symbiotic microbes. Destruction and changes in the use of soils in the tropics have decreased biodiversity, bringing about the loss of valuable natural products. Many different types of useful products such as natural pesticides and drugs can arise from allelopathy studies. New methods must be generated for allelopathy as a part of the biotic resources management strategies.     

Restoring a seasonal wetland using woven black plastic weed mat to overcome a weed threshold

Little information is available on the use of woven black polypropylene weed control mat in ecological restoration. At a 6.5‐ha area of fertile Vertosol soil ex‐farmland near Perth, Western Australia, concerted efforts to control weed using conventional methods such as herbicides, fire and cultivation proved ineffective. After 5 years, weeds still dominated the site, and native plant establishment was poor. Small‐scale preliminary trials of various weed suppression coverings were then undertaken, with plastic weed mat the most cost‐effective in overcoming the weed threshold, permitting native tree seedling establishment. In a larger‐scale trial of weed mat over the whole site, weeds were controlled and high levels of native plant establishment achieved, with a diverse range of understorey, midstorey and overstorey species providing 56% projected foliage cover. This ensured that completion criteria were finally satisfied. These results suggest that weed mat may be effective for weed control in large‐scale restoration where conventional methods have failed, as long as ultimate removal or decomposition and other issues are addressed.     

Habitat-specific responses of seed germination and seedling establishment to soil water condition in two Rheum species in the high Sino-Himalayas

Knowledge of how germination and seedling establishment respond to soil water condition is crucial for plant conservation under global warming and land-use changes. We tested the flooding and drought tolerance of two plant species with different occurrences along a soil water gradient by assessing seed germination, seedling survival, seedling growth, and root characteristics. In the high Sino-Himalayas, Rheum alexandrae typically occurs in wetlands, R. nobile in scree or open slope with well-drained soils. Seeds and seedlings of the two species were subjected to different soil water conditions in controlled greenhouse experiments. Seed germination in both species was inhibited by high soil water content; however, seeds of R. alexandrae were more tolerant to flooding, especially to submergence. Seedling survival, biomass accumulation, root diameter, and root porosity of R. alexandrae increased significantly with increased soil water content, but submergence was lethal for seedlings. Seedling survival, biomass accumulation, and root length of R. nobile increased significantly in response to reduced soil water content. These results indicate that in the two species, seed germination and seedling establishment in response to different soil water condition are habitat-specific. Because both species are susceptible to moderate changes in soil water condition, their species-specific requirements with respect to this factor should be a consideration when planning their conservation.     

Toward the domestication of lignocellulosic energy crops: learning from food crop domestication

Domestication of cereal crops has provided a stable source of food for thousands of years. The extent to which lignocellulosic crops will contribute to the world's renewable energy depends largely on how the new crops will be domesticated. Growing miscanthus as biofuel feedstocks on marginal and degraded land in northern and northwestern China offers an example for developing theoretical framework and practical strategies for energy crop domestication. The domestication should incorporate the highest possible genetic diversity from wild species, focus on the improvement of drought and cold tolerance especially in the stage of crop establishment, increase the efficiencies of water and nutrient uses and photosynthesis, adjust vegetative growing season according to local temperature and precipitation, and reduce or prevent seed production. Positive ecological effects on soil conservation, landscape restoration, carbon sequestration, and hydrological cycles should be maximized, while negative impact on biodiversity needs to be minimized. With the development of other sources of renewable energy, the role of lignocellulosic crops may evolve from primarily energy production to increasingly ecological restoration and biomaterial development. The integration of this new cropping system into the existing agriculture may open a new avenue to the long-term sustainability of our society.     

Quantifying targets to manage invasion risk: light gradients dominate the early regeneration niche of naturalized and pre-commercial Miscanthus populations

Prospective bioenergy crops have caused concern about their invasive potential because they often share characteristics with known invasive species. Studies that examine the factors that limit regeneration of these crop species will be crucial for identifying vulnerable habitats and devising management strategies to reduce the likelihood of escape from cultivation. Using a response surface design, we investigated the influence of light availability, soil moisture, and litter cover on recruitment and establishment of a potential biofuel cultivar of Miscanthus as well as an invasive congener. Responses were similar for the two plant types. Light availability had a strong influence on seedling success at both stages, though light limitation prevented establishment only at the lowest light level. Although variation in recruitment rates was low within plant types, establishment varied extensively in response to different light conditions. Low variation in Miscanthus seedling recruitment that led to establishment of a seedling bank under a range of light intensities may facilitate a “sit and wait” situation that raises the likelihood of successful escapes. Therefore, management efforts that restrict seed movement and increase light competition for seedlings will be important for lowering invasion risk. As deliberate introductions of bioenergy crops increase, ecological studies that quantify conditions required for successful escapes will be key to helping agronomists and managers mitigate the risk of unintended invasions.     

Early establishment of planted Retama sphaerocarpa seedlings under different levels of light,water and weed competition

Large amounts of former cropland are being abandoned in developedregions. To formulate guidelines for land reclamation programmes, we exploredthe effects of artificial shading, irrigation, and removal of weed competitionon the performance of Retama sphaerocarpa (L.) Boiss.seedlings in a factorial experiment located in an abandoned cropland in CentralSpain. R. sphaerocarpa is of interest for revegetationbecause it is a drought tolerant leguminous shrub that is a major structuralcomponent of the native plant community. Seedling performance was evaluated inthree ways: seedling survivorship, growth, and photochemical efficiency. Wealsomeasured soil moisture and weed biomass production and found that bothincreasedunder artificial shading conditions. Soil moisture increased very slightlywhereweeds were removed. Thus, increased transpiration from weeds outweighed reducedevaporation from soils due to shading by weeds. Artificial shading was the mosteffective treatment for seedling survivorship, followed by removal ofcompetition by weeds. After summer, 34 % of the seedlings survived in the mostfavourable conditions (artificially shaded plots where weeds were removed),compared to ca. 1 % in full-light plots with no removal of weed competition. Apositive effect of irrigation was found for growth of seedling cover and heightin shaded plots. The analysis of photochemical efficiency pointed out therelevance of weed competition removal, and confirmed the usefulness of fastfluorescence transient techniques for the quantification of seedlingperformance. The data suggest that competition between seedlings and weeds wasprimarily for water rather than for light. We conclude that i) artificialshading improved seedling performance, but this is a little practical techniquebecause of its cost; ii) as weeds compete with, rather than facilitate, plantedseedlings, weed clipping around the seedlings is a feasible technique thatwouldimprove seedling survival; and iii) seedling performance could alsoconsiderablyimprove with a higher irrigation than was used in this experiment(75lm^–2 per growth period), provided that weedsare removed.     

基于高通量测序分析大豆和油菜根际微生物群落结构的差异

根肿病是由芸薹根肿菌侵染引起的专性寄生性土传病害,严重制约着油菜等十字花科作物的可持续生产.前期研究发现,大豆作为前茬作物可以显著降低后茬油菜根肿病的发生和危害,"豆-油轮作"模式是一种值得探索和应用的根肿病防治新途径.为了解开大豆作为前茬防治根肿病发生的机理,本研究基于扩增子测序技术探究大豆与油菜根际土壤微生物的群落结构差异.结果表明:大豆和油菜根际土壤微生物类群在门水平的优势类群相同,包括变形菌门、拟杆菌门、酸杆菌门、放线菌门、子囊菌门、接合菌门、担子菌门和壶菌门等丰度都较高.但相比于油菜根际土壤,大豆根际土壤富含具有生防作用和促进植物生长的微生物,如黄杆菌属、鞘脂单胞菌属、芽孢杆菌属、链霉菌属、假单胞菌属、木霉属和盾壳霉属等;而一些植物病原细菌(如肠杆菌、黄单胞菌)和真菌(炭疽菌和尾孢菌)含量则低于油菜根际土壤;另外,大豆根际土壤中还富含具有固氮功能的根瘤菌属、慢生根瘤菌属和丛枝菌根真菌(如球囊霉属).可见,大豆根际土壤利于有益微生物生长并可抑制病原菌繁殖.大豆和油菜根际微生物组差异为大豆-油菜轮作防治根肿病提供了理论依据,并为根肿病的防治提供了一些潜在的生物防治资源.     

Metabolic engineering of fatty acid biosynthesis in plants.

Fatty acids are the most abundant form of reduced carbon chains available from nature and have diverse uses ranging from food to industrial feedstocks. Plants represent a significant renewable source of fatty acids because many species accumulate them in the form of triacylglycerol as major storage components in seeds. With the advent of plant transformation technology, metabolic engineering of oilseed fatty acids has become possible and transgenic plant oils represent some of the first successes in design of modified plant products. Directed gene down-regulation strategies have enabled the specific tailoring of common fatty acids in several oilseed crops. In addition, transfer of novel fatty acid biosynthetic genes from noncommercial plants has allowed the production of novel oil compositions in oilseed crops. These and future endeavors aim to produce seeds higher in oil content as well as new oils that are more stable, are healthier for humans, and can serve as a renewable source of industrial commodities. Large-scale new industrial uses of engineered plant oils are on the horizon but will require a better understanding of factors that limit the accumulation of unusual fatty acid structures in seeds.     

Biofuels and other approaches for decreasing fossil fuel emissions from agriculture

Biofuels offer one method for decreasing emissions of carbon dioxide (CO2) from fossil fuels, thus helping to meet UK and EU targets for mitigating climate change. They also provide a rational option for land use within the EU that could be economically viable, provided that an appropriate financial and policy environment is developed. If 80% of current set‐aside land in the UK were used for production of biomass crops for electricity generation, about 3% of current UK electricity demand could be met from this source. Considering possibilities for increasing yields and land area devoted to such crops over the coming decades, this could possibly rise to 12%. These estimates exclude consideration of developments in electricity generation which should increase the efficiency of conversion. Also, the use of combined heat and power units at local level (e.g. on farms or in rural communities) gives additional energy saving. Dedicated biomass crops such as willow, poplar, miscanthus, switchgrass or reed canary grass are perennials: in comparison with annual arable crops they would be expected to deliver additional environmental benefits. The elimination of annual cultivation should give a more stable environment, beneficial for farmland biodiversity. Some increase in soil organic matter content is likely, leading to some sequestration of carbon in soil and long‐term improvements in soil quality. The impact on water quality may be positive as nitrate losses are small and a similar trend is expected for phosphate and pesticides. However, these crops may well use more water than arable crops so their impact on water resources could be negative – an issue for further research. Agricultural land can also be used to produce liquid fuels for use in transport. At present biodiesel can be produced from oilseed rape and ethanol from either sucrose in sugar beet or cellulose from virtually any plant material. In the short‐term, liquid biofuels are an easy option as they require little change to either agriculture or transport infrastructure. However, their benefits for CO2 emissions are much less than for biomass used for generating electricity. It is therefore necessary to debate the priorities for land use in this context.     

Positive plant microbial interactions

Problems and concerns in relation to the use of inorganic fertilisers, irrigation, herbicides and pesticides have led to the search for alternative strategies to combat limiting soil nutrient and water levels and the effect of weeds and pests on crops. Greater utilisation of microorganisms in agricultural systems could possibly allow reductions in the use of inorganic fertilisers, water, herbicides and pesticides with no impact on crop yield. Positive plant microbial interactions which are currently under study are considered here.     

Ecological significance of root tip rotation for seedling establishment of Oryza sativa L

How plant seeds secure root penetration into soil to obtain good seedling establishment is one of the basic ecological problems. In this study, seminal root growth was investigated to clarify the cause of varietal difference of seedling establishment in direct seeding of rice in flooded paddy fields, with special reference to root tip rotation. In a field experiment, seedling establishment percentage had a weak correlation with seminal root elongation rate but was not correlated with apparent seedling weight in water, which has been reported to be the cause of floating seedlings resulting in poor seedling establishment. Root tip rotation was analyzed for indoor-grown seedlings using spectrum analysis: the maximum entropy method (MEM) was used. Maximum entropy method power spectrum analysis clarified that maximum MEM power density (practically corresponds to spiral angle) detected in the frequency range above 0.1 cycles mm^-1 was highly and positively correlated to seedling establishment percentage in the field experiment. Maximum MEM power density in high correlation with seedling establishment was mostly found around frequencies of 0.2 cycles mm^–1, which corresponded to 2.0–3.4 cycles of root tip rotation per day. From these results, root tip rotation (circumnutation) with a larger spiral angle was suggested to play an important role in the establishment of rice seedlings on flooded and very soft soil. A possible explanation for why a larger spiral angle was advantageous for seedling establishment is that if buoyancy and seedling weight are constant, a larger pushing force of the seminal root is available without causing floating of a seedling, due to the upward force being a reaction of the seminal root pushing force.     

Weed seed resources for birds in fields with contrasting conventional and genetically modified herbicide-tolerant crops

The UK Farm Scale Evaluations (FSEs) have shown that the use of broad spectrum herbicides on genetically modified herbicide-tolerant (GMHT) crops can have dramatic effects on weed seed production compared to management of conventional varieties. Here, we use FSE data and information on bird diets to determine how GMHT cropping might change the food resources available to farmland birds. More than 60 fields of each of four crops, spring- and winter-sown oilseed rape, beet and maize, were split, one half being sown with a conventional variety, the other with a GMHT variety. Seed rain from weeds known to be important in the diets of 17 granivorous farmland bird species was measured under the two treatments. In beet and spring oilseed rape, rain of weed seeds important in the diets of 16 bird species was significantly reduced in GMHT compared to conventional halves; for no species did it increase. In winter oilseed rape, rain of weed seeds important in the diets of 10 species was significantly reduced in GMHT halves; for only one species did it increase significantly. By contrast, in maize, rain of weed seeds important in the diets of seven species was significantly greater in GMHT halves; for no species was it reduced. Treatment effects for the total weed seed energy available to each bird species were very similar to those for seed rain alone. Measuring the effects on individual bird species was outside the scope of this study. Despite this, these results suggest that should beet, spring and winter rape crops in the UK be largely replaced by GMHT varieties and managed as in the FSEs, this would markedly reduce important food resources for farmland birds, many of which declined during the last quarter of the twentieth century. By contrast, GMHT maize would be beneficial to farmland birds.     

End-of-season soil water depletion in relation to growth of herbaceous vegetation in a sub-humid Mediterranean dwarf-shrub community on two contrasting soils

Dwarf-shrub communities of Sarcopoterium spinosum dominate large areas of the landscape on hilly, eastern Mediterranean rangelands. Colonisation of new areas depends on the establishment of seedlings that must compete for water with the ubiquitous annual herbaceous species during the spring-winter growing season and also survive the first hot, dry summer. The present study investigated the role of the herbaceous vegetation patches growing between S. spinosum shrubs on the depletion of soil water during the critical transition period between the cool, rainy season and the dry summer. Dense and sparse herbaceous vegetation stands were established in S. spinosum dwarf-shrub communities by differential use of fertiliser on two contrasting soil types – a terra rossa overlying hard limestone where seedling establishment is low and a pale rendzina overlying a soft chalk substrate where seedling establishment is high. Soil water in the main root zone of the herbaceous vegetation between the shrubs was monitored with protected gypsum block sensors permanently placed at two depths (10 and 33 cm). Soil water depletion during the transition from the wet to the dry season was significantly more rapid under dense vegetation only on the terra rossa soil where the herbaceous vegetation also matured more rapidly than on the rendzina soil. However, in both habitats and under both dense and sparse vegetation, soil water depletion during the transition period left very little available water in the rooting zone of the herbaceous vegetation to maintain shrub seedlings throughout the summer. It was concluded that the difference in shrub seedling establishment success in the two habitats mainly reflects the differences in accessibility of water below the rooting zone of the herbaceous vegetation growing on the two contrasting soil types.     

Quantitative genetic analysis of seed vigour and pre-emergence seedling growth traits in Brassica oleracea

The ability of seeds to germinate and establish seedlings in a predictable manner under a range of conditions has a direct contribution to the economic success of commercial crops, and should therefore be considered in crop improvement. We measured traits associated with seed vigour and pre-emergence seedling growth in a segregating population of 105 doubled haploid Brassica oleracea lines. The germination traits measured were: mean germination times for unstressed germination; germination under water stress or germination after a heat treatment; and conductivity of seed leachate. The seedling growth traits measured were: seed weight; seedling growth rate; and seedling size at the end of the exponential growth phase. There were some correlations, notably among germination traits, and between seed weight and pre-emergence seedling growth. Heritability of the various traits was typically in the 10–15% range, with heritability of conductivity and mean germination time under water stress 25 and 24% respectively. Collectively the results indicate that germination and pre-emergence seedling growth are under separate genetic control. Quantitative trait loci analyses were carried out on all measurements and revealed significant loci on linkage groups O1, O3, O6, O7 and O9. We suggest that genes at these loci are important in determining predictable seed germination and seedling establishment in practice.     

施用硫肥对几种作物与牧草产量和硫素含量的影响

为了研究不同作物的需S状况。对我国北方3种主要农作物(小麦、玉米、油菜)和牧草(苜蓿)进行了5个施硫水平(0、5、10、20和40mg·kg^-1)的盆栽试验．结果表明。增施一定量的硫肥可以提高作物生物量和产量．4种作物生物量增加5％～32％．小麦和油菜籽粒产量增加3％～20％．同时。增施硫肥可以使作物体内S素增加,但不同作物含硫量明显不同,油菜含硫量最高(0．479％～1．228％)。玉米含硫量最低(0．043％～0．091％)．同一作物不同部位含硫量不同。但同一作物不同部位含硫量呈显著的线性正相关．如油菜I、油菜Ⅱ和小麦植株与其种子含硫量的相关性都达极显著水平,R2值分别为0．399、0．654和0．547(n=15)．作物生物量、产量与施硫量相关性除苜蓿外．都达显著或极显著水平;作物生物量、产量与作物体内硫素含量除苜蓿外也显著或极显著相关;作物从土壤中吸收的S开始时随土壤的有效硫增加而增加,但达到一定程度时。随着有效硫的增加吸收的S略有下降．     

A wheat lipid transfer protein 3 could enhance the basal thermotolerance and oxidative stress resistance of Arabidopsis

Wheat (Triticum aestivum L.) is one of the major grain crops, and heat stress adversely affects wheat production in many regions of the world. Previously, we found a heat-responsive gene named Lipid Transfer Protein 3 (TaLTP3) in wheat. TaLTP3 was deduced to be regulated by cold, ABA, MeJA, Auxin and oxidative stress according to cis-acting motifs in its promoter sequences. In this study, we show that TaLTP3 is responsive to prolonged water deficit, salt or ABA treatment in wheat seedlings. Also, TaLTP3 accumulation was observed after the plant suffered from heat stress both at the seedling and the grain-filling stages. TaLTP3 protein was localized in the cell membrane and cytoplasm of tobacco epidermal cells. Overexpression of TaLTP3 in yeast imparted tolerance to heat stress compared to cells expressing the vector alone. Most importantly, transgenic Arabidopsis plants engineered to overexpress TaLTP3 showed higher thermotolerance than control plants at the seedling stage. Further investigation indicated that transgenic lines decreased H₂O₂ accumulation and membrane injury under heat stress. Taken together, our results demonstrate that TaLTP3 confers heat stress tolerance possibly through reactive oxygen species (ROS) scavenging.