Bacterial Diversity in Shallow Oligotrophic Marine Benthos and Overlying Waters: Effects of Virus Infection,Containment, and Nutrient Enrichment

Little is known of the factors shaping sediment bacterial communities, despite their high abundance and reports of high diversity. Two factors hypothesized to shape bacterial communities in the water column are nutrient (resource) availability and virus infection. The role these factors play in benthic bacterial diversity was assessed in oligotrophic carbonate–based sediments of Florida Bay (USA). Sediment–water mesocosm enclosures were made from 1-m diameter clear polycarbonate cylinders which were pushed into sediments to 201 cm sediment depth enclosing 80 L of water. Mesocosms were amended each day for 14 d with 10 µM NH ₄ ⁺ and 1 µM PO ₄ ^3– . In a second experiment, viruses from a benthic flocculent layer were concentrated and added back to flocculent layer samples which were collected near the mesocosm enclosures. Photosynthesis by microalgae in virus-amended incubations was monitored by pulse-amplitude modulated (PAM) fluorescence. In both experiments, bacterial diversity was estimated using automated rRNA intergenic spacer analysis (ARISA), a high-resolution fingerprinting approach. Initial sediment bacterial operational taxonomic unit (OTU) richness (236 ± 3) was higher than in the water column (148 ± 9), where an OTU was detectable when its amplified DNA represented >0.09% of the total amplified DNA. Effects on bacterial diversity and operational taxonomic unit (OTU) richness in nutrient-amended mesocosms may have been masked by the effects of containment, which stimulated OTU richness in the water column, but depressed OTU richness and diversity in sediments. Nutrient addition significantly elevated virus abundance and the ratio of viruses to bacteria (p < 0.05 for both) in the sediments, concomitant with elevated bacterial diversity. However, water column bacterial diversity (in unamended controls) was not affected by nutrient amendments, which may be due to rapid nutrient uptake by sediment organisms or adsorption of P to carbonate sediments. Addition of live viruses to benthic flocculent layer samples increased bacterial OTU diversity and richness compared with heat-killed controls; however, cluster analyses showed that the community structure in the virus-amended mesocosms varied greatly between replicates. Despite the strong effects upon eubacterial communities, photosynthesis of co-occurring protists and cyanobacteria was not significantly altered by the presence of virus concentrates. This study supports the hypothesis that nutrient availability plays a key role in shaping sediment bacterial communities, and also that viruses may regulate the abundance of the dominant competitors and allow less dominant organisms to maintain or increase their abundance in a community due to decreased competition for resources.     

One-bond carbon-proton coupling constants: Angular dependence in β-linked oligosaccharides

Summary The angular dependence of¹J_C,H in model compounds related to -linked oligosaccharides has been established by FPT INDO quantum chemical calculations. Values calculated for models of (1 1)-, (1 2)-, (1 3)- and (1 4)-linked disaccharides were compared, and the effect of the orientation of HO-2 elucidated. The angular dependence of¹J_C,H on the torsional angles ^H and ^H and the solvent dielectric constant (s) was characterized in the form:¹J_C,H = A cos2+B cos + C sin2 + D since + E + Fe. The¹J_C,H values, measured by DEPT methods for C-1-H-1 and C-X-H-X in cellobiose, cyclic trisaccharide and hexopyranoses were used to adjust the calculated angular dependences. Based on the occurrence of the conformers for agarobiose, neoagarobiose, mannobiose and methyl -xylobioside, the thermodynamically averaged <¹J_C,H > values were calculated. The results obtained (<¹J_C-1,H-1 > 162.4, <¹J_{C-4, H-4} > 147.6 Hz for methyl -xylobioside; <¹J_C-1,H-1 > 162.4 and <¹J_C-4,H-4] > 147.6 Hz for mannobiose; <¹J_C-1,H-1 > 162.8 Hz for neo agarobiose and <¹J_C-1,H-1 > 163.2 Hz for agarobiose) agree well with the experimental values of 162.7, 147.5, 160.4, 147.2, 160.9 and 165.7 Hz, respectively.     

Vertical distribution of organic constituents in an Antarctic lake: Lake Fryxell

Vertical distribution of organic constituents, i.e. total organic carbon (TOC), hydrocarbons, fatty acids and hydroxy acids in water and sediment samples from Lake Fryxell (77° 35 S, 163° 15 E) of southern Victoria Land, Antarctica were studied to elucidate their features in relation to stratification of the lake waters and likely distribution of microorganisms. The TOC content of the surface water (5.0 m; just below the ice cover of 4.50 m thickness) was 1.4 mg l^–1. It increased markedly with depth and attained a maximum value of 21.7 mg C l^–1 at a depth of 17.5 m, but decreased to the bottom (13.3 mg C l^–1). The high TOC content of the anoxic bottom layers (> 15 m) is attributable to the concentration of refractory organic substances over long periods following the degradation of labile organic constituents. Hydrocarbons were not found in the water column, but the major constituent of the bottom sediment was n-C_{29 : 2} alkene. Total concentrations of fatty acids in the oxic layers ( 10 m) were highest at 10.0 m and much higher than those in the anoxic layers (> 10 m), probably reflecting the phytoplankton population. The content of branched (iso and anteiso) fatty acids and 3-hydroxy acids in the anoxic layers were much greater than those in the oxic layers which would seem to reflect the distribution of bacterial abundance. The differences of organic composition between the water column and sediments imply that sinking dead organisms were quickly degraded in the lake bottom. Also, the composition of microorganisms in the water column must be very different from that in the sediments.     

Iron-bound phosphorus in marine sediments as measured by bicarbonate-dithionite extraction

A sequential five-step extraction scheme for phosphorus pools in freshwater sediment was modified for use in marine sediments. In the second step phosphate bound to reducible forms of iron and manganese (iron-bound P) is extracted by a bicarbonate buffered dithionite solution (BD-reagent). The extraction scheme was tested on sediment from 16 m water depth in Aarhus Bay, DK and used in two other marine sediments: Kattegat at 56 m and Skagerrak at 695 m depth. By comparing the BD-extractable P-pool with both the pool of iron in the BD-fraction and the pool of oxidized, amorphous or poorly crystalline iron (am.FeOOH), highly significant correlations (p < 0.001) were observed in all three sediments. Thus, we conclude that the BD-reagent was very specific for iron-bound P. Further evidence for this came from two experiments: 1) Enhanced BD treatment did not result in additional phosphate extraction and 2) by sequential extraction of phosphorus pools in pure cultures of diatoms and cyanobacteria no phosphate was recovered in the BD-fraction. The pool of am.FeOOH was very important for controlling porewater phosphate concentration which was inferred from the significant inverse relationships between the two parameters (p < 0.001) in all sediments studied. Further, an isotopic exchange experiment with ³²PO_f4/^p3– revealed that BD-extractable P was by far the most exchangeable P-pool even deep in the sediment where the pool size was small. Iron-bound P made up 33–45% of total P in the surface sediments. The ratio between iron-bound phosphate and am.FeOOH was 8–11 in Aarhus Bay and Kattegat. In Skagerrak the ratio was 17, which may indicate that the iron mineral extracted from this sediment is less capable of adsorbing phosphate or less saturated with phosphate.     

Influence of redox potential on phosphate-uptake by sediments in two sub-tropical eutrophic lakes

Biogeochemical reactions in shallow eutrophic lakes areaffected bythe changes in redox potential (Eh) as bottom sedimentsundergotemporal resuspension and settling. The stability of varioussediment P fractions and kinetics of P-uptake were evaluatedfortwo sub-tropical lakes (Lake Apopka and Lake Okeechobee,Florida)using sediment suspensions in closed systems maintained atvariousEh levels ranging from –235 to 555 mV. Redox potential hadminimal effect on the stability of NaOH-P (Fe-/Al-bound P plusmoderately resistant organic P) and HCl-P (Ca-/Mg-P) fractionsinLake Apopka sediments. Increases in ortho-P and NH₄Cl-P(loosely-bound P plus labile organic P) concentrations wereobserved in highly reduced (Eh=–225 mV) Apopkasediments.Phosphate solubility diagrams and mineral equilibriacalculationssuggest that P-uptake by Apopka bottom sediments at elevated Pconcentrations (ortho-P110 M) was due toformationof Ca-P compounds and/or co-precipitation of P withCaCO₃. Incontrast, the ortho-P concentrations for Lake Okeechobeebottomsediments increased exponentially with decreasing Eh. Thequantityof NaOH-P fractions for these sediments decreased withdecreasingEh, suggesting the release of Fe- and Mn-bound P intosolution.Phosphate-uptake by Okeechobee bottom sediments (pH 7.5,ambient)followed first order kinetics, yielding a rate constant (k)of 0.51±0.05 h^-1. Unlike that of Apopka, the mudsediments in Lake Okeechobee have strong affinity for P ineitheraerobic or anaerobic conditions. Results suggest that even incalcareous systems, Fe and Al, when present in highconcentrations(as in the case of Lake Okeechobee), are actively involved inregulating P-uptake and geochemistry.     

Microbial Processes of the Carbon and Sulfur Cycles in Lake Shira (Khakasia)

Microbiological and biogeochemical studies of the meromictic saline Lake Shira (Khakasia) were conducted. In the upper part of the hydrogen-sulfide zone, at a depth of 13.5–14 m, there was a pale pink layer of water due to the development of purple bacteria (6 × 10⁵ cells/ml), which were assigned by their morphological and spectral characteristics toLamprocystis purpurea (formerly Amoebobacter purpureus). In August, the production of organic matter (OM) in Lake Shira was estimated to be 943 mg C/(m²day). The contribution of anoxygenic photosynthesis was insignificant (about 7% of the total OM production). The share of bacterial chemosynthesis was still less (no more than 2%). In the anaerobic zone, the community of sulfate-reducing bacteria played a decisive role in the terminal decomposition of OM. The maximal rates of sulfate reduction were observed in the near-bottom water (114 g S/(l day)) and in the surface layer of bottom sediments (901 g S/(dm³ day)). The daily expenditure of C_org for sulfate reduction was 73% of C_org formed daily in the processes of oxygenic and anoxygenic photosynthesis and bacterial chemosynthesis. The profile of methane distribution in the water column and bottom sediments was typical of meromictic reservoirs. The methane content in the water column increased beginning with the thermocline (7–8 m) and reached maximum values in the near-bottom water (17 l/l). In bottom sediments, the greatest methane concentrations (57 l/l) were observed in the surface layer (0–3 cm). The integral rate of methane formation in the water column and bottom sediments was almost an order of magnitude higher than the rate of its oxidation by aerobic and anaerobic methanotrophic microorganisms.     

Effects of 2-chloropropionate on venous plasma lactate concentration and anaerobic power during periods of incremental intensive exercise in humans

We investigated the effects of a stimulation of pyruvate dehydrogenase (PDH) activity induced by 2-chloropropionate (2-CP) on venous plasma lactate concentration and peak anaerobic power (W _{an, peak}) during periods (6 s) of incremental intense exercise, i.e. a force-velocity (F-) test known to induce a marked accumulation of lactate in the blood. TheF- test was performed twice by six subjects according to a double-blind randomized crossover protocol: once with placebo and once with 2-CP (43 mg · kg^–1 body mass). Blood samples were taken at ingestion of the drug, at 10, 20, and 40 Min into the pretest period, at the end of each period of intense exercise, at the end of each 5-min recovery period, and after completion of theF- test at 5, 10, 15, and 30 min. During theF- test, venous plasma lactate concentrations with both placebo and 2-CP increased significantly when measured at the end of each period of intense exercise (F = 33.5,P < 0.001), and each 5-min recovery period (F = 24.6,P < 0.001). Venous plasma lactate concentrations were significantly lower with 2-CP at the end of each recovery period (P < 0.01), especially for high braking forces, i.e. 8 kg (P < 0.05), 9 kg (P < 0.02), and maximal braking force (P < 0.05). After completion of theF- test, venous plasma lactate concentrations were also significantly lower with 2-CP (P < 0.001). The percentage of lactate decrease between 5- and 30-min recovery was significantly higher with 2-CP than with the placebo [59 (SEM 4)% vs 44.6 (SEM 5.5)%,P < 0.05]. Furthermore,W _{an, peak} was significantly higher with 2-CP than with the placebo [1016 (SEM 60) W vs 957 (SEM 55) W,P < 0.05]. In conclusion, PDH activation by 2-CP attenuated the increase in venous plasma lactate concentration during theF- test. Ingestion of 2-CP led to an increasedW _{an, peak}.     

Chlorophyll fluorescence upper-to-lower-leaf ratio for determination of irrigation time for Pentas lanceolata

The objective of this study was to use nondestructive measurements as the precise irrigation indices for potted star cluster (Pentas lanceolata). Drought stress was imposed on plants for 0, 3, 5, 7, 12, and 16 d by withholding water. Measurements were conducted on the third leaf counted from the apex (upper leaves) and on the third leaf from the bottom (lower leaves). Within the range of soil water content (SWC) from 10 to 45%, leaf water potential (WP), SWC, and soil matric potential (SMP), chlorophyll fluorescence, photochemical reflectance index (PRI), adjusted normalized difference vegetation index (aNDVI), and the reflectance (R) at 1950 nm (R₁₉₅₀) were measured. The plants reached the temporary wilting point at ?3.87 MPa of leaf WP; the maximal fluorescence yield of the light-adapted state (F_m′) ratio of upper-to-lower leaves was 1.7. When the F_m′ ratio was 1.3, it corresponded to lower-leaf WP < ?2.27 MPa, SWC < 21%, SMP < ?20 kPa, PRI < 0.0443, aNDVI < 0.0301, and R₁₉₅₀ > 8.904; it was the time to irrigate. In conclusion, the F_m′ ratio of upper-to-lower leaves was shown to be a nondestructive predictor of leaf WP and can be used to estimate irrigation timing.     

Population-Genetic Structure of Chuvash Populations Inferred from the Data on Eight DNA Loci of the Nuclear Genome

Population-genetic study of indigenous populations representing three ethnic Chuvash group: highland (Cheboksarsk and Morgaush district), lowland (Kanash district) and mid-lowland (Marposad district). Eight polymorphic DNA loci of the nuclear genome (VNTR/PAH, STR/PAH, VNTR/ApoB, VNTR/DAT1, APF, VNTR/eNOS, IVS6aGATT, and KM.19/PstI) were examined in the population of each district. For each of the four population, we estimated the allele and genotype frequency distributions at each polymorphic system, heterozygosities H _S and between-population differences F _ST. In the combined Chuvash sample, = 0.464 and = 0.006. Loci VNTR(DAT) and VNTR(ApoB) showed highest between-population differentiation (0.009 F _ST 0.012), and loci IVS6aGATT, APF, VNTR(eNOS), andD7S23(KM.19), lowest differentiation (0.001 F _ST 0.003). Analysis of genetic distances revealed somewhat higher genetic similarity between the Cheboksarsk and Morgaush populations belonging to the highland Chuvash group, whereas the highland Chuvash population from the Marposad district, which belong to the mid-lowland group, was more distant from the former populations.     

The Biogeochemical Cycle of Methane in the Coastal Zone and Littoral of the Kandalaksha Bay of the White Sea

Microbiological and biogeochemical investigations of the processes of methane production (MP) and methane oxidation (MO) in the coastal waters and littoral of the Kandalaksha Bay of the White Sea were carried out. The studies were conducted in the coastal zones and in the water areas of the Kandalaksha Preserve, Moscow State University White Sea Biological Station, and the Zoological Institute (RAS) biological station in August 1999, 2000, and 2001 and in March 2001. The rate of CO₂ assimilation in the shallow and littoral sediments was 35–27800 g C/(dm³ day) in summer and 32.8–88.9 g C/(dm³ day) in winter. The maximal rates of MP were observed in the littoral sediments in the zone of macrophyte decomposition, in local depressions, and in the estuary of a freshwater creek (up to 113 l/(dm³ day)). The maximal level of MO was observed in the shallow estuarine sediments (up to 2450 l/(dm³ day)). During the winter season, at the temperature of –0.5 to 0.5°C, the MP rate in the littoral sediments was 0.02–0.3 l/(dm³ day), while the MO rate was 0.06–0.7 l/(dm³ day). The isotopic data obtained indicate that the C_org of the mats and of the upper sediment layers is enriched with the heavy ¹³C isotope by 1–4 as compared to the C_org of the suspension. A striking difference was found between the levels of methane emission by the typical littoral microlandscapes. In fine sediments, the average emission was 675 l CH₄/(m² day); in stormy discharge stretch sediments, it was 1670 l CH₄/(m² day); and under stones and in silted pits, 1370 l CH₄/(m²day). The calculation, performed with consideration of the microlandscape areas with a high production, allowed the CH₄ production of 1 km² of the littoral to be estimated as 192–300 l CH₄/(km² day).     

Inorganic phosphate in exposed sediments of the River Garonne

Fractionation of inorganic phosphates in sediments of the River Garonne was carried out during a period of low water discharge. Sediments were collected under 5 cm of water (LS), in the dried river bank (MS) and in the riparian forest (RS). Sediments were sampled at two dates, during a period in which the water level fell gradually, causing sediment LS to be air exposed.Sediments were analysed for total phosphate, iron bound phosphate (Fe(OOH)P) using Ca-NTA and Ca bound phosphate (CaCO₃P) using Na-EDTA.Total-P varies from 552 (RS at date 1) to 2072 µg g^–1 (LS at date 2). There are significant differences between sediments and a significant increase from date 1 to date 2 in sediment LS only (1825 to 2072 µg g^–1). Fe(OOH)P varies from 186 (RS at date 1) to 874 µg g^–1 (LS at date 2). The highest values correspond to sediment LS. Moreover, Fe(OOH)P increased significantly between date 1 and 2 in LS (560 to 874 µg g^–1) as well as in sediment MS (248 to 432 µg g^–1). Ca bound P concentrations differed significantly between sediments (75, 112, 235 µg g^–1 for sediments RS, MS and LS respectively) but not between sampling dates.These differences are attributed to the conditions of deposition of the sediments (such as morphology and hydrology of the river) and to the changes in chemical composition during the drying out of the sediments.     

Relationship Between Protein Denaturation and Water Holding Capacity of Pork During Postmortem Ageing

This study investigated water holding capacity (WHC), water distribution, and protein denaturation of pork loin chops (longissimus lumborum) packaged in polyethylene bags throughout display at 4?±?1 °C for up to 1, 3, 5, 7 and 9 days. The drip loss of pork eventually increased following a decrease during the first 5 days of storage. Nuclear magnetic resonance (NMR) analysis revealed an increase in population of immobilized water P₂₂ from day 1 to day 5, meanwhile a sharp decrease after 9 days was noticed. However, an opposite trend was observed for the population of free water P₂₃. Correlation analysis indicated that myofibrillar protein solubility was negatively correlated with drip loss (p?<?0.05), whereas sarcoplasmic protein measurement were not related to drip loss (p?>?0.05). Furthermore, the content of α-helices increased during the first 5 days of storage (p?<?0.05), which suggested increased WHC during the earlier period of postmortem storage. During the subsequent postmortem storage, the content of α-helices decreased significantly (p?<?0.05), while the β-sheets and β-turns increased. The maximum temperatures (T_max) of three endothermic peaks were found to be 53.6 °C, 65.2 °C, and 77.6 °C at 1 day postmortem. A significant decrease were observed for T_{max peakI},T_{max peakII},T_{max peakIII} at 9 d when compared to 1 d postmortem (p?<?0.05), suggesting loss of thermal stability and protein denaturation.     

Strong Indirect Effects of a Submersed Aquatic Macrophyte, Vallisneria americana, on Bacterioplankton Densities in a Mesotrophic Lake

Phytoplankton and allochthonous matter are important sources of dissolved organic carbon (DOC) for planktonic bacteria in aquatic ecosystems. But in small temperate lakes, aquatic macrophytes may also be an important source of DOC, as well as a source or sink for inorganic nutrients. We conducted micro- and mesocosm studies to investigate the possible effects of an actively growing macrophyte, Vallisneria americana, on bacterial growth and water chemistry in mesotrophic Calder Lake. A first microcosm (1 L) study conducted under high ambient NH ₄ ⁺ levels (NH ₄ ⁺ 10 µM) demonstrated that macrophytes had a positive effect on bacterial densities through release of DOC and P. A second microcosm experiment, conducted under NH ₄ ⁺ -depleted conditions (NH ₄ ⁺ < 10 µM), examined interactive effects of macrophytes and their sediments on bacterial growth and water chemistry. Non-rooted macrophytes had negative effects on bacterial numbers, while rooted macrophytes had no significant effects, despite significant increases in DOC and P. A 70-L mesocosm experiment manipulated macrophytes, as well as N and P supply under surplus NH ₄ ⁺ conditions (NH ₄ ⁺ 10 µM), and measured effects on bacterial growth, Chl a concentrations, and water chemistry. Bacterial growth and Chl a concentrations declined with macrophyte additions, while bacterial densities increased with P addition (with or without N). Results suggest that the submersed macrophyte Vallisneria exerts a strong but indirect effect on bacteria by modifying nutrient conditions and/or suppressing phytoplankton. Effects of living macrophytes differed with ambient nutrient conditions: under NH ₄ ⁺ -surplus conditions, submersed macrophytes stimulated bacterioplankton through release of DOC or P, but in NH ₄ ⁺ -depleted conditions, the influence of Vallisneria was negative or neutral. Effects of living macrophytes on planktonic bacteria were apparently mediated by the macrophytes use and/or release of nutrients, as well as through possible effects on phytoplankton production.     

Bacterial Processes of the Methane Cycle in Bottom Sediments of Lake Baikal

The activity of methanogenic and methanotrophic bacteria was evaluated in bottom sediments of Lake Baikal. Methane concentration in Baikal bottom sediments varied from 0.0053 to 81.7 ml/dm³. Bacterial methane was produced at rates of 0.0004–534.7 l CH₄/(dm³ day) and oxidized at rates of 0.005–1180 l CH₄/(dm³ day). Peak methane production and oxidation were observed in Frolikha Bay near a methane vent. Methane was emitted into water at rates of 49.2–4340 l CH₄/(m² day). Rates of bacterial methane oxidation in near-bottom water layers ranged from 0.002 to 1.78 l/(l day). Methanogens and methanotrophs were found to play an important role in the carbon cycle through all layers of sediments, particularly in the areas of methane vent and gas-hydrate occurrence.     

Relation between phosphate and organic matter in fish-pond sediments of the Deroua fish farm (Béni-Mellal, Morocco): implications for pond management

An experimental approach of the phosphate exchange across the water–sediment interface in fish ponds of the Deroua farm (Béni-Mellal, Morocco) is needed to understand the phosphate dynamics in these ponds in relation to their water quality. During this study, we conducted experiments to determine the P-fractions of the different pond sediments and to estimate the release from these sediments of phosphate available for algal uptake. We also determined the amount of phosphate needed to saturate the sediments of two different fish ponds under anoxic and oxic conditions. Phosphate release from sediments comes mainly from Fe(OOH)P and is more important in ponds lined with sheets. The accumulation of organic matter in sediments favours the installation of anoxic conditions and enhances the phosphate release from CaCO₃P, labile in these pond sediments. Under experimental conditions, org-P plays a minor role in the P-release. Oxic conditions, to the contrary, have an inhibitory effect on the P-release from sediments. About 80–98% of the P-adsorbed onto different pond sediments was recovered in the inorg-P-fractions. Aeration induces the oxidation of FeS to Fe(OOH) which can adsorb phosphate from solution. Besides, the presence of bacteria in pond sediments was essential to promote phosphate release under anoxic conditions by controlling the oxidation state of iron and the mineralization of the organic matter. Sheet-lined ponds, when insufficiently dried, accumulate a large quantity of organic matter in their sediments. After a decrease in pH, P is released from CaCO₃P and enhances the phytoplankton productivity responsible for renewed accumulation of organic matter. Org-C concentrations in sediments over 20 mg g^–1 d.w. favour the formation of toxic factors (Fe²⁺, Mn²⁺, NO₂ ^– and H₂S) harmful for carp growth. An extended period of drying efficiently enhances the mineralization of organic matter.     

The occurrence and behaviour of phosphate fractions in Izmir Bay, Aegean Sea

The area around Izmir Bay (Turkey) is heavily urbanized and receives, therefore, high concentrations of phosphate originating from industrial and municipal inputs. During the surveys between April 1993 and July 1994, the total phosphate concentrations were highest in the Inner Bay (6.45 M and 5.59 M in the surface and bottom water, respectively) where very dense anthropogenic pollution occurs. The total phosphate value gradually decreased towards the Outer Bay where 0.70 M and 1.18 M were found in the surface and bottom water, respectively. The distribution of dissolved inorganic, dissolved organic and particulate phosphate along the bay reflected some peculiar spatial and temporal patterns. A high percentage of dissolved organic phosphate was observed in the Outer Bay while the particulate phosphate peaked in the Middle Bay where an upwelling mechanism was observed. In the bay, the biological production was strongly correlated with the variations in the dissolved inorganic, organic and particulate phosphate. The high phosphate concentration in particles caused the particulate phosphate formed in the Inner Bay to be transported to the outer parts of the bay because of the short water residence time. On the other hand, Principal Component Analysis showed that about 35% of the variation in all variables measured were related to the total phosphate, total dissolved phosphate, dissolved inorganic phosphate and particulate phosphate together with ammonium and reactive-Fe while about 14% of the variation was related to the dissolved organic phosphate and the number of phytoplankton cells, chl-a, pH and O₂.     

2-Ketogluconic Acid Production and Phosphate Solubilization by <Emphasis Type="Italic">Enterobacter intermedium</Emphasis>

Enterobacter intermedium, isolated from grass rhizosphere, exhibited a strong ability to solubilize insoluble phosphate. This bacterium oxidized glucose to gluconic acid and sequentially to 2-ketogluconic acid (2-KGA), which was identified using HPLC and GC-MS. The ability of E. intermedium to solubilize phosphate and produce 2-KGA produce in broth medium containing different components was monitored with air and without air supply. With an air supply, the production of 2-KGA markedly increased to about 110 g/l at day 10 in media containing 0.2 M gluconic acid, while it was about 65 g/l without gluconic acid addition. With an air supply, the concentration of soluble phosphate significantly decreased to 200–250 mg/l in media containing 1% CaCO₃, whereas it was about 1000 mg/l without CaCO₃ addition. Without an air supply, the concentration of 2-KGA and phosphate were negligible throughout the culture period. RID= ID= <E5>Correspondence to: </E5>K.Y. Kim; <E5>email:</E5> kimkil&commat;chonnam.ac.kr Received: 21 August 2002 / Accepted: 25 September 2002     

Associations of ATGL gene polymorphisms with chicken growth and fat traits

Adipose triglyceride lipase (ATGL) catalyses the initial step in triglyceride hydrolysis, so theATGL gene is a candidate for growth and fat traits in chickens. Nine reported single-nucleotide polymorphisms (SNPs) located in 3 exons of the chickenATGL gene were chosen for genotyping an F₂ population. Only 5 SNPs were confirmed for polymorphisms and used for association analyses. The results show that c.531G>A (p.E177Syn) was not associated with any growth and fat traits (P > 0.05), but c.782G>A (p.S261N) was associated with body weight (BW) on days 14, 21, 35, 63, 70, 77, cingulated fat width and abdominal fat pad weight (P< 0.05), and significantly associated with BW on days 42, 49, and 56 (P < 0.01). Significant associations of c.903C>T (p.F301Syn) with BW on days 49 and 77 days and crude protein content of breast muscle (P < 0.05), and c. 1164G>A (p.K388Syn) with BW on day 7 (P< 0.05) were also detected. Additionally, c. 1069T>C (p.L357Syn) was associated with breast muscle colour (P < 0.05), and significantly associated with crude fat (ether extract) content of breast muscle (P< 0.01). Thus the missense SNP of c.782G>A (p.S261N) was significantly associated with the largest number of chicken growth and fat traits in this study.     

Kinetic studies of ATP synthase: The case for the positional change mechanism

The mitochondrial ATP synthases shares many structural and kinetic properties with bacterial and chloroplast ATP synthases. These enzymes transduce the energy contained in the membrane's electrochemical proton gradients into the energy required for synthesis of high-energy phosphate bonds. The unusual three-fold symmetry of the hydrophilic domain, F₁, of all these synthases is striking. Each F₁ has three identical subunits and three identical subunits as well as three additional subunits present as single copies. The catalytic site for synthesis is undoubtedly contained in the subunit or an , interface, and thus each enzyme appears to contain three identical catalytic sites. This review summarizes recent isotopic and kinetic evidence in favour of the concept, originally proposed by Boyer and coworkers, that energy from the proton gradient is exerted not directly for the reaction at the catalytic site, but rather to release product from a single catalytic site. A modification of this binding change hypotheses is favored by recent data which suggest that the binding change is due to a positional change in all three subunits relative to the remaining subunits of F₁ and F₀ and that the vector of rotation is influenced by energy. The positional change, or rotation, appears to be the slow step in the process of catalysis and it is accelerated in all F₁F₀ ATPases studied by substrate binding and by the proton gradient. However, in the mammalian mitochondrial enzyme, other types of allosteric rate regulation not yet fully elucidated seem important as well.     

Sequencing and genotypic analysis of the triosephosphate isomerase (TPI1) locus in a large sample of long-lived Germans

Background

With crucial roles on the differentiation of anterior pituitary and the regulation of the prolactin (PRL), growth hormone (GH) and thyroid-stimulating hormone-β (TSH-β) genes, the chicken PIT1 gene is regarded as a key candidate gene for production traits. In this study, five reported polymorphisms (MR1-MR5) of the PIT1 gene were genotyped in a full sib F₂ resource population to evaluate their effects on growth, carcass and fatty traits in chickens.

Results

Marker-trait association analyses showed that, MR1 was significantly associated with shank diameters (SD) at 84 days (P < 0.05), hatch weight (HW) and shank length (SL) at 84 days (P < 0.01), MR2 was significantly associated with BW at 28, 42 days and average daily gain (ADG) at 0–4 weeks (P < 0.05), and MR3 was significantly associated with ADG at 4–8 weeks (P < 0.05). MR4 was associated with SL at 63, 77, 84 days and BW at 84 days (P < 0.05), as well as SD at 77 days (P < 0.01). Significant association was also found of MR5 with BW at 21, 35 days and SD at 63 days (P < 0.05), BW at 28 days and ADG at 0–4 weeks (P < 0.01). Both T allele of MR4 and C allele of MR5 were advantageous for chicken growth. The PIT1 haplotypes were significantly associated with HW (P = 0.0252), BW at 28 days (P = 0.0390) and SD at 56 days (P = 0.0400). No significant association of single SNP and haplotypes with chicken carcass and fatty traits was found (P > 0.05).

Conclusion

Our study found that polymorphisms of PIT1 gene and their haplotypes were associated with chicken growth traits and not with carcass and fatty traits.