Metabolomics analysis and metabolite‐agronomic trait associations using kernels of wheat (Triticum aestivum) recombinant inbred lines

Plants produce numerous metabolites that are important for their development and growth. However, the genetic architecture of the wheat metabolome has not been well studied. Here, utilizing a high‐density genetic map, we conducted a comprehensive metabolome study via widely targeted LC‐MS/MS to analyze the wheat kernel metabolism. We further combined agronomic traits and dissected the genetic relationship between metabolites and agronomic traits. In total, 1260 metabolic features were detected. Using linkage analysis, 1005 metabolic quantitative trait loci (mQTLs) were found distributed unevenly across the genome. Twenty‐four candidate genes were found to modulate the levels of different metabolites, of which two were functionally annotated by in vitro analysis to be involved in the synthesis and modification of flavonoids. Combining the correlation analysis of metabolite‐agronomic traits with the co‐localization of methylation quantitative trait locus (mQTL) and phenotypic QTL (pQTL), genetic relationships between the metabolites and agronomic traits were uncovered. For example, a candidate was identified using correlation and co‐localization analysis that may manage auxin accumulation, thereby affecting number of grains per spike (NGPS). Furthermore, metabolomics data were used to predict the performance of wheat agronomic traits, with metabolites being found that provide strong predictive power for NGPS and plant height. This study used metabolomics and association analysis to better understand the genetic basis of the wheat metabolism which will ultimately assist in wheat breeding.     

Genetic analysis of tolerance to photo-oxidative stress induced by high light in winter wheat （Triticum aestivum L.）

High light induced photooxidation (HLIP) usually leads to leaf premature senescence and causes great yield loss in winter wheat. In order to explore the genetic control of wheat tolerance to HLIP stress, a quantitative trait loci (QTL) analysis was conducted on a set of doubled haploid population, derived from two winter wheat cultivars. Actual values of chlorophyll content (Chl), minimum fluorescence level (Fo), maximum fluorescence level (Fm), and the maximum quantum efficiency of photosystem Ⅱ (Fv/Fm) under both HLIP and non-stress conditions as well as the ratios of HLIP to non-stress were evaluated. HLIP considerably reduced Chl, Fm, and Fv/Fm, but increased Fo, compared with that under non-stress condition. A total of 27, 16, and 28 QTLs were associated with the investigated traits under HLIP and non-stress and the ratios of HLIP to non-stress, respectively. Most of the QTLs for the ratios of HLIP to non-stress collocated or nearly linked with those detected under HLIP condition. HLIP-induced QTLs were mapped on 15 chromosomes, involving in 1A, 1B, 1D,2A, 2B, 2D, 3A, 3B, 4A, 4D, 5B, 6A, 6B, 7A, and 7D while those expressed under non-stress condition involved in nine chromosomes, including 1B, 1D, 2A, 2B, 3B, 4A, 5A, 5B, and 7A. The expression patterns of QTLs under HLIP condition were different from that under non-stress condition except for six loci on five chromosomes. The phenotypic variance explained by individual QTL ranged from 5.0% to 19.7% under HLIP, 8.3% to 20.8% under non-stress, and 4.9% to 20.2% for the ratios of HLIP to non-stress, respectively. Some markers, for example,Xgwm192 and WMC331 on 4D regulating Chl, Fo, Fm, and Fv/Fm under HLIP condition, might be used in marker assistant selection.     

Genetic variability of Old Portuguese bread wheat cultivars assayed by IRAP and REMAP markers

Retrotransposons (RTNs) constitute informative molecular markers for plant species as a result of their ability of integrating into a multitude of loci throughout the genome and thereby generating insertional polymorphisms between individuals. Inter-retrotransposon amplified polymorphisms (IRAPs) and the retrotransposon-microsatellite amplified polymorphisms (REMAPs) are marker systems based on long terminal repeats (LTRs) RTNs, developed for plants, that have been widely used for evolution, genetic diversity, DNA fingerprinting of cultivars and varieties, genetic mapping linkage and for detection of genetic rearrangements induced by polyploidisation. In the present study, we aimed to analyse the genetic variability among 48 Old Portuguese bread wheat cultivars using both IRAP and REMAP markers. Five IRAP and six REMAP primer combinations were used. IRAP produced 103 polymorphic fragments in a total of 113 bands. On average, 22.6 bands were amplified per IRAP primer combination. The bands ranged in size from 250 to 5000 bp. The REMAP primer combinations allowed the amplification of 53 bands, 51 of them polymorphic. An average of 8.8 REMAP bands was scored per primer combination. The REMAP bands ranged from 250 to 3000 bp. Both marker systems presented high percentages of polymorphism. However, IRAP markers were suitable for detecting genetic variability at the individual level and did not differentiate higher taxa. The REMAP maker system allowed the clustering by botanical variety and identified most of the homonym bread wheat cultivars.     

Genetic dissection of seminal root architecture in elite durum wheat germplasm

Although root architecture has been shown to play an important role in crop performance, particularly under drought conditions, no information is available on the genetic control of root traits in durum wheat, a crop largely grown in rainfed areas with low rainfall. In our study, a panel of 57 elite durum wheat accessions were evaluated under controlled conditions for root and shoot traits at the seedling stage. Significant genetic variability was detected for all the root and shoot traits that were investigated. Correlation analysis suggested that root and shoot features were only partially controlled by common sets of genes. The high linkage disequilibrium (up to 5 cM) present in the germplasm collection herein considered allowed us to use simple sequence repeat‐based association mapping to identify chromosome regions with significant effects on the investigated traits. In total, 15 chromosome regions showed significant effects on one or more root architectural features. A number of these regions also influenced shoot traits and, in some cases, plant height measured in field conditions. Major effects were detected on chromosome arms 2AL (at Xgwm294), 7AL (at Xcfa2257 and Xgwm332) and 7BL (at Xgwm577 and Xcfa2040). The accessions with the most remarkable differences in root features will provide a valuable opportunity to assemble durum wheat mapping populations well suited for ascertaining the effects of root architecture on water use efficiency and grain yield.     

Response of photosynthetic apparatus to moderate high temperature in contrasting wheat cultivars at different oxygen concentrations

The photosynthetic responses to moderately high temperatures (38 degrees C, imposed at 21% or 2% O(2) in air and 1500 mumol m(-2) s(-1)) were compared in wheat (Triticum aestivum L.) cultivars grown in northern regions of Ukraine and expected to be relatively sensitive to high temperatures ('North' cultivars) and in cultivars grown in southern regions and expected to be relatively heat-tolerant ('South' cultivars). Heating intact leaves in 21% O(2) for 1 h decreased CO(2) assimilation by c. 63% in 'North' cultivars and only c. 32% in 'South' cultivars, with a decrease in PSII activity being observed in only one of the 'North' cultivars. Carboxylation efficiency was decreased by about 2.7-fold in 'North' cultivars with no significant effect in 'South' cultivars. The maximum rates of carboxylation by Rubisco in vivo, V(cmax), estimated from Farquhar's model, increased more than 2-fold in 'South' cultivars and remained unchanged in 'North' cultivars while the maximum rate of RuBP regeneration, J(max), decreased by 53% and 21% in 'North' and 'South' cultivars, respectively. Where the heat treatment was imposed in 2% O(2) this increased (as compared with treatment at 21% O(2)) the inhibitory effect on CO(2) assimilation in tolerant cultivars, but decreased it in sensitive ones. The results suggested that differences in tolerance of moderately high temperatures in wheat relate to the stability of the Rubisco function and to RuBP regeneration activity rather than to the effects on PSII activity or stomatal control.     

Effects of source/sink manipulation on net photosynthetic rate and photosynthate partitioning during grain filling in winter wheat

Source-sink relationship, which was influenced by both genotype and environmental factors, contributed to the variation in photosynthesis and photosynthate partitioning of wheat. Source reduction by partial defoliation increased leaf net photosynthetic rate (PN), and sink reduction decreased PN of irrigated wheat. However, the change in PN varied among genotypes. Source reduction enhanced photosynthate translocation into grain in irrigated wheat. However, the enhancement was more evident in cv. Lumai 215953 than incv. Lumai 15. Sink reduction had little effect on the translocation of photosynthate into grain in cv. Lumai 15, but decreased the translocation of photosynthate into grain and increased it into stem in cv. Lumai 215953. In rainfed, non-irrigated wheat, the source or sink manipulation influenced PN only slightly. The source reduction decreased the partitioning of photosynthates into the upper parts (including grains) of plant. However, very little effects of sink reduction on the production of photosynthates occurred in rainfed wheat. This showed that grain sink size was not a factor limiting the production of photosynthates, but controlled the partitioning of photosynthates. Sink reduction decreased photosynthate translocation into grains, and increased it into upper parts of rainfed wheat plant. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic variability and heritability of drought-induced abscisic acid accumulation in spring wheat

Abstract. Twenty cultivars of spring wheat were examined for variation in abscisic acid (ABA) accumulation following partial dehydration of excised leaves. A 3-fold range of ABA concentration was obtained.
A cross between two cultivars which differed in drought-induced ABA accumulation was used to study the heritability of ABA accumulation and to develop lines differing in their capacity to accumulate ABA. Broad sense heritability was 0–32 between the F₂ and F₃ generations and 0–70 between the F₃ and F₄ generations. Apparent homozygosity for ABA accumulation was achieved in several selections at the F₄. The possible significance for drought resistance of differences in capacity to accumulate ABA is discussed.     

普通小麦低分子量麦谷蛋白亚基核心编码区与面团强度关系的研究

为分析LMW-GS基因对面团强度的影响, 利用两个重组自交系99G45/京771和Pm97034/京771的F9代,对LMW-GS基因特异位点和与其紧密连锁的Gli-1位点进行分析, 研究对面团强度影响差异显著的Glu-B3位点的等位基因核心编码区的序列差异。结果表明, 3个亲本LMW-GS核心编码区都具有6个半胱氨酸残基, 但PB较GB和JB缺失了一个7氨基酸序列的重复单元, 并且在不同序列中出现了氨基酸代换, 其中有2个代换可能影响氨基酸序列的亲水性, 进而影响面团强度。     

遮光处理对不同生育期小麦生物量分配和叶片叶绿素含量的影响

以普通小麦'扬麦12号'(Triticum aestivum 'Yangmai 12') 为实验材料,研究了遮光处理对不同生育期小麦生物量分配和叶片叶绿素含量的影响.结果显示,从拔节期到完熟期,在不同遮光条件下(对照:相对透光率为100%;T1:相对透光率约为80%;T2:相对透光率约为60%;T3:相对透光率约为20%),小麦地上部分、地下部分及全株干质量随着发育期的延续总体呈增加趋势.遮光处理使小麦地上部分和地下部分干质量较对照不同程度降低,其中遮光对地上部分干质量的影响大于地下部分,并且根冠比随遮光程度的增加而增大.从开花期开始,各个生育期T3处理组小麦的根冠比均为最大,对照组小麦的根冠比均为最小.'扬麦12号'地上部分和地下部分异速生长关系为简单的线性异速生长模型,遮光后小麦的异速性减小,按小麦地上部分和地下部分间的异速性由大至小依次排序为对照组、T1处理组、T2处理组、T3处理组.从抽穗期到乳熟期,对照及各处理组小麦叶片的叶绿素a、叶绿素b及总叶绿素含量在灌浆期(或乳熟期)最高;在不同的生育期,不同遮光处理对小麦叶片中叶绿素a、叶绿素b及总叶绿素含量的影响不同,随着遮光程度的增加,各遮光处理组小麦的叶绿素a/b均不同程度低于对照.     

Role of abscisic acid in regulation of wheat seedling growth under salinity stress

Growth of wheat seedlings (Triticum aestivum L. cv. Mehran-89), in hydroponic culture, was affected by abscisic acid (ABA). Using salinity stress and exogenous ABA application (10-6 M) to enhance endogenous ABA level, the growth of roots was more suppressed than the growth of shoots. On the other hand, norflurazon, which inhibits ABA biosynthesis, reduced only the growth of shoots. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic analysis of photosynthetic variation in hexaploid and tetraploid wheat and their interspecific hybrids

Intra- and inter-specific variation in CO₂ assimilation rate (A) in Triticum spp. is well documented for reproductive growth stages. Research was conducted to characterize early vegetative photosynthetic variation in a diverse set of cultivated hexaploid wheat (T. aestivum L.) germplasm and in wild tetraploid (T. dicoccoides Korn) and hexaploid x tetraploid populations. Choice of hexaploid genotypes was based on maximum genetic distance between cultivars within the HRW and SRW wheat classes of the USA. The tetraploid material was produced by hybridizing two accessions of T. dicoccoides previously shown to differ widely in A and A/Chl but with similar leaf morphology. Genetic variability in the HRW and SRW gene pools was attributed to more recently developed descendent lines and unrelated lines rather than parental lines. Phenotypic distributions for A, stomatal conductance (gs), and internal CO₂ concentration (Ci) in the F₂ tetraploid population were continuous and showed transgressive segregation, reflecting quantitative inheritance with intermediate heritability. Variability in A was not associated with chlorophyll content or CO₂ supply to the mesophyll measured as Ci. Genetic variability in A was also observed in the interspecific backcross population, 2*TAM W-101/PI 428109, thereby providing a germplasm pool to select for high A while restoring the D genome of hexaploid wheat. These results suggest that genetic improvement of vegetative assimilation rate is feasible in hexaploid wheat via homologous transfer from an alien source.Abbreviations HRW hard red winter - LA leaf area - r_G genotypic correlation - r_P phenotypic correlation - SRW soft red winter     

Relationship between leaf water spin-lattice relaxation time and water relation parameters in three wheat cultivars

Pot culture studies were conducted using two drought-tolerant and one susceptible cultivar of wheat (Triticum aestivum L.) under three different moisture regimes. Proton spin-lattice relaxation time, T₁, leaf water content, LWC, leaf water potential, Ψ, solute potential, Ψ_s and turgor potential, Ψ_p were measured from 45 to 75 d after sowing at weekly intervals. The three cultivars did not differ significantly in their values of LWC, leaf water potential, and their components in the stressed and unstressed plants; but they did differ significantly in their T₁ values both under stressed and unstressed conditions on all days of measurement, with the drought tolerant cultivars having a higher T₁ compared to the susceptible cultivar. This suggests that leaf water T₁ is a better parameter for describing plant water status than the traditional water relation indices. The relation between Ψ and T₁ was logarithmic, indicating the similarity between T₁ and water activity of the cellular water.     

Mediation of high-temperature injury by roots and shoots during reproductive growth of wheat

Abstract Previous studies suggest that high temperature stress on wheat (Triticum aestivum L.) involves root processes and acceleration of monocarpic senescence. Physiological changes in wheat roots and shoots were investigated to elucidate their relationship to injury from elevated temperatures after anthesis. Plants were grown under uniform conditions until 10 d after anthesis, when shoot/root regimes of 25°C/25°C, 25°C/35°C, 35°C/25°C and 35°C/35°C were imposed. Growth and senescence of shoots and grain were influenced more by root temperatures than by shoot temperatures. High root temperatures increased activities of protease and RNasc enzymes, and loss of chlorophyll, protein and RNA from shoots, whereas low root temperatures had opposite effects. High root temperatures appeared to induce shoot senescence directly. High shoot temperatures probably disrupted root processes, including export of cytokinins, and induced high leaf protease activity, senescence and cessation of grain development. The authors concluded that responses of wheat to high temperatures, whether of roots or shoots, are manifested as acceleration of senescence and may be mediated by roots during grain development.     

Growth,abscisic acid content,and carbon isotope composition in wheat cultivars grown under different soil moisture

Changes in dry matter accumulation and allocation, abscisic acid content and carbon isotope composition of three wheat cultivars from dry, middle and wet climate regions were recorded at full maturity after exposure to different watering regimes (100, 50 and 25 % field capacity). Compared with the wet climate cultivar, the dry climate cultivar showed lower stem height, total leaf area, total dry biomass and total grain dry mass, and higher root/shoot ratio, abscisic acid content and carbon isotope composition under all watering regimes. Both water-limited treatments significantly reduced leaf growth and increased dry matter allocation into the roots leading to a significant raise of root/shoot ratio in all cultivars tested. In addition, drought affected morphological and physiological properties more in the dry climate cultivar than in the wet climate cultivar.     

Protective and injuring action of visible light on photosynthetic apparatus in wheat plants during hyperthermia treatment

Illumination of wheat (Triticum aestivum L.) leaves during heat treatment produced either additional injury or protection of photosynthetic apparatus depending on irradiance and the heating dose. Furthermore, illumination of leaves during hyperthermia exerted differential impacts on thermal tolerances of photosynthesis and photosystem II-driven electron transport assessed from the reduction of 2,6-dichlorophenolindophenol (DCPIP). Measurements with infrared gas analyzer showed that mild heating of leaves in darkness (10 min at 38–40°C) had stronger inhibitory effect on CO₂ uptake than heating of leaves exposed to low and moderate complex irradiances (3–30 klx), as well as excessive irradiance (75–100 klx). When the leaves were heated at higher temperatures (42–44°C), the low and moderate irradiances had a protective action, while high-intensity light aggravated the inhibition of photosynthesis. Illumination of leaves with weak light during heat treatment mitigated the impairment of chloroplast ultrastructure, whereas irradiation with high-intensity light (100 klx) destroyed the sensitive population of chloroplasts. The heat-stimulated photoinhibition was stronger for leaf photosynthesis than for DCPIP reduction in chloroplasts isolated from heat-treated leaves. No correlation was observed between the extent of violaxanthin deepoxidation, zeaxanthin accumulation, and the protective effect of light on photosynthetic apparatus during heat treatments.     

Anatomy and photosynthetic parameters of roots and leaves of two shade-adapted orchids, Dichaea cogniauxiana Shltr. and Epidendrum secundum Jacq.

This study compares photosynthetic and structural features of Dichaea cogniauxiana and Epidendrum secundum leaves and roots. The diurnal titratable acidity fluctuations indicated crassulacean acid metabolism (CAM) in E. secundum leaves, associated with anatomical features like thick cuticle, large and vacuolated cells, and reduced stomata size and frequency. Roots of both species had chloroplasts in their cortical parenchyma. However, neither the roots nor D. cogniauxiana leaves did show tissue sap acidity fluctuations. This indicates C₃ metabolism in these organs. This lack of oscillation of organic acids in Epidendrum roots was at odds with a CAM-like ¹³C ratio, suggesting that in spite of active CO₂ fixation in roots during the day, the bulk of carbon is imported from the leaves. Roots of both species showed Fv/Fm, ΔF/Fm′, ETR values similar to reports from other non-foliar photosynthetic organs. Besides reducing root carbon cost, root photosynthesis may also be important by alleviating potential hypoxia, since water-saturated velamen severely impedes the gas exchange between radicular cortex.     

小麦秸秆复合基质的理化指标及其对黄瓜幼苗生长和光合参数的影响

以小麦(Triticum aestivum L.)秸秆基质(发酵)为主,按不同比例分别添加蛭石、珍珠岩和草炭,配制10种复合基质;以不含小麦秸秆基质的复合基质为对照,对各基质的基本理化性状进行了分析和比较,并研究了不同基质对黄瓜(Cucumis sativus L.)幼苗生长、叶片叶绿素含量和光合参数的影响。结果显示:不同基质的理化指标有明显差异,小麦秸秆基质与蛭石、珍珠岩和草炭混配均降低或显著降低了基质的容重、总孔隙度、持水孔隙度、水气比、小颗粒含量、pH值和电导率,提高了通气孔隙度以及大、中颗粒的含量。按V(小麦秸秆基质)∶V(蛭石)∶V(草炭)=50∶25∶25的比例配制的复合基质T9的容重、总孔隙度、通气孔隙度、持水孔隙度、水气比和电导率分别为0.33g.cm-3、68.1%、15.3%、52.8%、3.45和3.91 mS.cm-1,理化性状最佳,具有良好的吸水和保水性能。总体上看,随复合基质中小麦秸秆基质比例的降低,黄瓜幼苗的株高、茎粗、根总长、根总体积、平均单根直径和根尖总数、生物量和壮苗指数以及叶片的叶绿素含量均呈上升趋势;复合基质中小麦秸秆基质比例较高,黄瓜叶片的净光合速率、气孔导度和蒸腾速率均较低,但与对照相比,不同基质对叶片胞间CO2浓度及水分利用效率无显著影响。在复合基质T9中黄瓜幼苗的这些生长指标、壮苗指数以及叶片叶绿素含量和光合参数总体上高于或显著高于对照和其他复合基质,生长良好。结果表明:复合基质T9较适合黄瓜幼苗的生长发育,可作为黄瓜育苗基质。     

Blue light regulation of stomata in wheat seedlings. I. Influence of red background illumination and initial conductance level

A red background illumination synergistically increased the sensitivity of the stomatal conductance response to low intensity blue light in wheat seedlings ( Triticum aestivum L. cv. Starke II, Weibull). It also saturated the photosynthesis dependent mechanisms so that they did not respond to the low quantum fluence rates needed to activate the blue light mechanism. Thus dual beam experiments provide a suitable experimental approach to study the blue light mechanism for stomatal regulation in the intact leaf. Time course studies indicated that in short time experiments the enhancement effect of the red background light was primarily a result of the increase in conductance level rather than a direct effect of the red light. This was confirmed with experiments where the stomatal blue light response was enhanced due to partial stomatal opening in CO₂ free air as well as due to circadian rhythm. During long term experiments the response to blue light gradually decreased. It could then, however, be restored by a simultaneous red background light.     

Genetic dissection of grain yield in bread wheat. I. QTL analysis

Grain yield forms one of the key economic drivers behind a successful wheat (Triticum aestivum L.) cropping enterprise and is consequently a major target for wheat breeding programmes. However, due to its complex nature, little is known regarding the genetic control of grain yield. A doubled-haploid population, comprising 182 individuals, produced from a cross between two cultivars ‘Trident’ and ‘Molineux’, was used to construct a linkage map based largely on microsatellite molecular makers. ‘Trident’ represents a lineage of wheat varieties from southern Australia that has achieved consistently high relative grain yield across a range of environments. In comparison, ‘Molineux’ would be rated as a variety with low to moderate grain yield. The doubled-haploid population was grown from 2002 to 2005 in replicated field experiments at a range of environments across the southern Australian wheat belt. In total, grain yield data were recorded for the population at 18 site-year combinations. Grain yield components were also measured at three of these environments. Many loci previously found to be involved in the control of plant height, rust resistance and ear-emergence were found to influence grain yield and grain yield components in this population. An additional nine QTL, apparently unrelated to these traits, were also associated with grain yield. A QTL associated with grain yield on chromosome 1B, with no significant relationship with plant height, ear-emergence or rust resistance, was detected (LOD ≥2) at eight of the 18 environments. The mean yield, across 18 environments, of individuals carrying the ‘Molineux’ allele at the 1B locus was 4.8% higher than the mean grain yield of those lines carrying the ‘Trident’ allele at this locus. Another QTL identified on chromosome 4D was also associated with overall gain yield at six of the 18 environments. Of the nine grain yield QTL not shown to be associated with plant height, phenology or rust resistance, two were located near QTL associated with grain yield components. A third QTL, associated with grain yield components at each of the environments used for testing, was located on chromosome 7D. However, this QTL was not associated with grain yield at any of the environments. The implications of these findings on marker-assisted selection for grain yield are discussed.