Establishing Causality between Pollution and Effects at Different Levels of Biological Organization: The VALIMAR Project

The study summarizes the objectives of the VALIMAR project and gives selected examples of biomarker responses that allow causal relationships to be established between exposure and biological effects at different levels of biological organization. In this project, active and passive biomonitoring experiments with brown trout (Salmo trutta f. fario) and stone loach (Barbatula barbatula) were performed in two small streams in southern Germany between 1995 and 1999 in parallel with investigations on contaminant mixtures in the laboratory in order to evaluate the suitability of biomarkers representing different levels of biological organization for the assessment of pollution in small streams. In addition to biomarker studies, the morphology of the test streams was characterized and limnological and chemical parameters were monitored. Early life stage tests and ecological studies of brown trout and stone loach population demography, of the fish assemblages, and the macro- and meiozoobenthos communities in the two test streams were included in the project. Several causality criteria were addressed by means of combined (1) laboratory and field studies, (2) chemical, biological, and statistical investigations, and (3) in vivo and in vitro studies that allowed establishment of cause-effect relationships at different biological levels. The comparison of results obtained at these levels allowed identification of mechanisms responsible for the respective effects (coherence of association, biological plausibility). Finally, individual responses (biomarkers, bioindicators) could be extrapolated to higher biological levels (population, community) thus addressing the criteria of ‘time order’ and ‘coherence of association’.     

Interpopulation Variation in the Social Organization of Female Collared Lizards, Crotaphytus collaris

We tested the hypotheses that levels of intrasexual aggression and the social structure among neighboring females differed in two central Oklahoma populations of collared lizards, Crotaphytus collaris, and examined the extent to which variation in aggression might be related to differences in the availability of arthropods, elevated perches used by females to scan for prey, and crawlspace refugia. Because both the costs of aggression and access to resources may influence female fitness, we also compared growth and survival rates and the number of clutches produced. At Morningside Farms Ranch (MS), lizards occupied naturally‐formed sandstone washes with naturally‐sculpted irregular topographies, whereas they inhabited homogenous fields of boulders used to construct flood control spillways at the Arcadia Lake Dam (AL). The frequency of intrasexual aggression was markedly higher at MS, and groups of MS females had social hierarchies structured by size and age with older females defending territories, whereas no such social structure was apparent at AL. Moreover, experimental removal of individuals from female groups resulted in more pronounced changes by the remaining females at MS than at AL. Elevated perches and crawlspace refugia were much less abundant at MS. Arthropod availability was similar at the two sites, but at AL arthropods were clustered near the edges of rock patches where elevated perches overlooking adjacent grassy areas were particularly abundant. MS females showed lower rates of survival, and growth during the first year (when growth is highest) than AL females, whereas the number of clutches produced by females at the two sites was similar. Our results suggest that variation in the availability of perch rocks may have resulted in differences in female social structure at the two sites, and relaxed intrasexual competition for perches may have resulted in higher female fitness at AL.     

The Role of Song Phonology and Syntax in Vocal Learning Preferences in the Song Sparrow,Melospiza melodia

Are young songbirds ready to learn virtually any song, or are they predisposed to learn songs of their own species? To explore this question tests were conducted on the equipotentiality of auditory song learning stimuli in the song sparrow. 23 males reared as nestlings were exposed to tape recordings of their own and other species songs in early life and subsequent song production was analyzed for imitations. Birds exposed to natural song sparrow songs, including their fathers', and equal numbers of swamp sparrow songs, strongly preferred conspecific songs. They neither favored nor eschewed paternal songs despite having had access to them for 6–10 days as nestlings. In three other experiments synthetic songs were used in which some properties were held constant and others were systematically varied. Birds were exposed to 1–4 segmented songs varying in phrase order, tempo and syllable number, each synthesized in two versions, one from conspecific and the other from heterospecific (swamp sparrow) song syllables. With one-segmented songs (alien syntax) subjects favored conspecific over heterospecific syllable songs. Heterospecific syllables were rendered more acceptable by incorporation into two-segmented trilled songs (more song sparrow-like syntax). Heterogeneous summation of phonological and syntactical cues appeared to occur. There was also evidence of interaction between phonology and syntax. When another phrase type, the note complex, was added, in three- and four-segmented songs, a preference for conspecific syllables reappeared. Heterospecific syllables may be more readily accepted as a trilled sequence than without repetition, as in a note-complex. When phrase structure within four-segmented songs was varied, birds favored patterns most like normal conspecific song. We conclude that there are innate learning preferences in the song sparrow, based on note and syllabic structure (phonology and syllabic syntax), and temporal organization of phrases (segmental syntax), differing from those of the closely related swamp sparrow, Melospiza georgiana, in which song syntax plays no role in learning preferences.     

Lead and Arsenic Levels in Women with Different Body Mass Composition

The objective of this study was to evaluate whether lead (Pb) and arsenic (As) levels in biological fluids were associated to the body composition in a group of reproductive-age women. Voluntary childbearing-age women (n = 107) were divided into three groups according to their body mass index (BMI: weight/height² (kg/m²): low weight (BMI<18.5 kg/m²), normal $ \left( {{\text{BMI}} > 19\kern1.5pt<\kern1.5pt24.9\,{{\text{kg}} \mathord{\left/{\vphantom {{\text{kg}} {{{\text{m}}^{\text{2}}}}}} \right.} {{{\text{m}}^{\text{2}}}}}} \right) $ \left( {{\text{BMI}} > 19\kern1.5pt<\kern1.5pt24.9\,{{\text{kg}} \mathord{\left/{\vphantom {{\text{kg}} {{{\text{m}}^{\text{2}}}}}} \right.} {{{\text{m}}^{\text{2}}}}}} \right) , and overweight (BMI>25 kg/m²). Body composition and fat mass percentage were determined by the isotopic dilution method utilizing deuterated water. Blood lead concentrations were determined by graphite furnace atomic absorption spectrometry and urinary arsenic (AsU) concentrations by inductively coupled plasma mass spectrometry. The type and frequency of food consumption and lifestyle-related factors were also registered. Most women had $ {\text{PbB}}\,{\text{levels}} > 2\kern1.5pt<\kern1.5pt10\,{\mu{{\text{ g}}} \mathord{\left/{\vphantom {\mu{{\text{ g}}} {\text{dL}}}} \right.} {\text{dL}}} $ {\text{PbB}}\,{\text{levels}} > 2\kern1.5pt<\kern1.5pt10\,{\mu{{\text{ g}}} \mathord{\left/{\vphantom {\mu{{\text{ g}}} {\text{dL}}}} \right.} {\text{dL}}} , and only 2.6% had AsU concentrations above 50 μg/L. The levels of these toxic elements were not found to be associated with the fat mass percentage.     

Descriptive Modeling of the Dynamical Systems and Determination of Feedback Homeostasis at Different Levels of Life Organization

The state-of-art research in the field of life’s organization confronts the need to investigate a number of interacting components, their properties and conditions of sustainable behaviour within a natural system. In biology, ecology and life sciences, the performance of such stable system is usually related to homeostasis, a property of the system to actively regulate its state within a certain allowable limits. In our previous work, we proposed a deterministic model for systems’ homeostasis. The model was based on dynamical system’s theory and pairwise relationships of competition, amensalism and antagonism taken from theoretical biology and ecology. However, the present paper proposes a different dimension to our previous results based on the same model. In this paper, we introduce the influence of inter-component relationships in a system, wherein the impact is characterized by direction (neutral, positive, or negative) as well as its (absolute) value, or strength. This makes the model stochastic which, in our opinion, is more consistent with real-world elements affected by various random factors. The case study includes two examples from areas of hydrobiology and medicine. The models acquired for these cases enabled us to propose a convincing explanation for corresponding phenomena identified by different types of natural systems.     

Variation of Expression Levels of Seven Housekeeping Genes at Different Life-History Stages in Porphyra yezoensis

In order to identify the optimal internal control for relative real-time PCR when studying target gene expression in the red alga Porphyra yezoensis, we quantified the expression of seven housekeeping genes (18S ribosomal RNA, 30S ribosomal protein S8, Polyubiquitin-2, Glyceraldehyde-3-phosphate dehydrogenase, Elongation factor 1-alpha, Beta-tubulin and Actin 3) at different life-history stages. Absolute quantification was done by normalization to total RNA quantity and by normalization to genomic DNA quantity. We used these two normalization approaches, comparing the differences of expression levels of all candidate housekeeping genes between any two generations and across three life-history stages (filamentous sporophytes, leafy gametophytes and conchospores). We found GAPDH had the best stability in all cases and we recommend that GAPDH be considered as a potential internal control for gene expression studies at different life-history stages in P. yezoensis.     

Estimation of Variances at Different Significance Levels

Variance components and their ratios broad-sense heritability and constancy were estimated for some quantitative traits in northwestern Spain populations of maize. Estimations were carried out at the significance levels of 5% and 25% and without significance limits. It can be concluded that estimation without significance limits is more efficient than the estimations at the usual levels in the method of analysis of experimental data from fields experiments.     

Duets,Greetings and Triumph Ceremonies: Analogous Displays in the Parrot Genus Trichoglossus

This paper describes a range of cooperative displays in the loriine parrot genus Trichoglossus. The displays tend to be performed jointly by the members of established monogamous pairs, and have evolved specialised characteristics which distinguish them from solo performances. The possible functions of these displays are discussed with reference to observations of apparently analogous performances in other monogamous avian and mammalian groups.     

Systemic Organization of Perceptive Activity in Children with Different Levels of Mental Development

Visual evoked potentials (EPs) of the left and right hemispheres in response to relevant and irrelevant stimuli in the structures of the left and right hemispheres have been studied in healthy young schoolchildren, learning-disabled (LD) children, and mentally retarded (MR) children. In healthy children, the largest EP variations depending on the stimulus relevancy have been found in associative structures of the left hemisphere. In LD children of the same age, the amplitude and temporal characteristics of left-hemispheric EPs to target and nontarget stimuli are the same. In MR children, EPs to relevant and irrelevant stimuli do not differ from each other in either the left or the right hemisphere. EP latencies are significantly longer in MR children than in healthy children. The results of simultaneous recording of EPs in the left and right hemispheres during isolated stimulation of the right and left visual half-fields indicate that interhemispheric interaction is impaired in children with deviations in mental development. The results of the study are discussed in terms of the psychological characteristics and learning ability of children.     

Vicilin Genes of Vigna luteola: Structure, Organization, Expression, and Variation

Two different but related sequences that encode Vigna luteola 7S vicilins were isolated and characterized. The sequences differ by two nucleotide substitutions, each of which results in an amino acid replacement. This low level of divergence suggests that a recent gene duplication has occurred. Both variants are expressed in cDNA populations; therefore, neither gene is a pseudogene. Both copies were present in all individuals (72) analyzed using real-time PCR and TaqMan probes. Segregation was not observed. The two sequences are not independent alleles. Vicilin genomic sequences of 11 specimens from six geographic locations were determined. No polymorphic sites were identified in either of the two gene copies. This lack of polymorphism suggests that either a population bottleneck or selection has occurred. The genetic structure, expression patterns, and protein composition of the V. luteola vicilins were compared to those of other legume vicilins.     

Dynamics of tRNA at Different Levels of Hydration

The influence of hydration on the nanosecond timescale dynamics of tRNA is investigated using neutron scattering spectroscopy. Unlike protein dynamics, the dynamics of tRNA is not affected by methyl group rotation. This allows for a simpler analysis of the influence of hydration on the conformational motions in RNA. We find that hydration affects the dynamics of tRNA significantly more than that of lysozyme. Both the characteristic length scale and the timescale of the conformational motions in tRNA depend strongly on hydration. Even the characteristic temperature of the so-called “dynamical transition” appears to be hydration-dependent in tRNA. The amplitude of the conformational motions in fully hydrated tRNA is almost twice as large as in hydrated lysozyme. We ascribe these differences to a more open and flexible structure of hydrated RNA, and to a larger fraction and different nature of hydrophilic sites. The latter leads to a higher density of water that makes the biomolecule more flexible. All-atom molecular-dynamics simulations are used to show that the extent of hydration is greater in tRNA than in lysozyme. We propose that water acts as a “lubricant” in facilitating enhanced motion in solvated RNA molecules.     

不同季节圈养麋鹿免疫和应激水平的变化及相关性

麋鹿Elaphurus davidianus是我国Ⅰ级重点保护动物,IUCN红皮书列为野外灭绝物种。本研究采用非损伤性取样(noninvasive sampling)及酶联免疫吸附测定(enzyme linked immunosorbent assay,ELISA)技术,对江苏大丰国家级自然保护区圈养麋鹿的免疫生理和应激生理指标进行了测定。结果表明:雌、雄麋鹿3种免疫球蛋白IgA、IgG和IgM含量秋季和夏季均高于冬季。雌性麋鹿IgG含量在各季节均高于雄性个体,比雄性个体具有更强的体液免疫;而雄性麋鹿IgM含量在各季节均高于雌性个体,雄性个体对异源免疫应答更灵敏。雌、雄麋鹿粪便皮质醇水平与IgM水平呈正相关,与IgG水平呈显著正相关,IgG是适合用于探测麋鹿免疫生理状态的指标,为麋鹿放归种群的监测和健康评价提供科学依据。     

Cortical Response Variation with Different Sound Pressure Levels: A Combined Event-Related Potentials and fMRI Study

Introduction

Simultaneous recording of electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) provides high spatial and temporal resolution. In this study we combined EEG and fMRI to investigate the structures involved in the processing of different sound pressure levels (SPLs).

Methods

EEG data were recorded simultaneously with fMRI from 16 healthy volunteers using MR compatible devices at 3 T. Tones with different SPLs were delivered to the volunteers and the N1/P2 amplitudes were included as covariates in the fMRI data analysis in order to compare the structures activated with high and low SPLs. Analysis of variance (ANOVA) and ROI analysis were also performed. Additionally, source localisation analysis was performed on the EEG data.

Results

The integration of averaged ERP parameters into the fMRI analysis showed an extended map of areas exhibiting covariation with the BOLD signal related to the auditory stimuli. The ANOVA and ROI analyses also revealed additional brain areas other than the primary auditory cortex (PAC) which were active with the auditory stimulation at different SPLs. The source localisation analyses showed additional sources apart from the PAC which were active with the high SPLs.

Discussion

The PAC and the insula play an important role in the processing of different SPLs. In the fMRI analysis, additional activation was found in the anterior cingulate cortex, opercular and orbito-frontal cortices with high SPLs. A strong response of the visual cortex was also found with the high SPLs, suggesting the presence of cross-modal effects.     

Variation in Composition of Yeast Phosphohexosans

Omitting of KH(2)PO(4) from culture media leads to the production of altered phosphohexosans or neutral extracellular mannans by yeasts that otherwise elaborate phosphogalactans and phosphomannans.     

Evaluating Effects of Contaminants on Fish Health at Multiple Levels of Biological Organization: Extrapolating from Lower to Higher Levels

Effects of environmental stressors such as contaminants on the health of aquatic ecosystems usually involve a series of biological responses ranging from the biomolecular/biochemical to the population and community levels. To establish relationships and to determine the feasibility of extrapolating between higher and lower levels of biological organization, spatial patterns in fish responses to contaminant loading were investigated in a stream receiving point-source discharges of various contaminants near its headwaters. Relationships among fish responses at four major levels of biological organization (biochemical/physiological, individual, population, and community levels) were evaluated relative to patterns in contaminant loading along the spatial gradient of the stream. Both individual and integrated response analysis demonstrated that bioindicators at several levels of biological organization displayed similar downstream patterns in their response to contaminant loading within the stream. Some of the bioindicator responses at lower levels of organization appear to be useful for the ecological risk assessment process because of their sensitivity and apparent relationships to higher levels. By identifying and establishing relationships between levels of biological organization we should be better able to understand the mechanisms of stress responses in ecological systems that could ultimately result in improved predictive capability of ecological risk assessment and also allow for more informed decisions regarding remedial actions.     

不同海拔高原适应相关肝脏功能与脂代谢变化

目的：分析高原移居者肝脏功能及血脂水平。方法：选择不同海拔高原移居者（平均10年以上）男性80名,无高血压及糖尿病病史。按高原会议订立标准分组：低海拔组（〈1500米）8例,中海拔组（1500-2500米）9例,高海拔组（2500-4500米）36例,特高海拔及以上组（〉4500米）9例,运输组（2700-4600米）18例。清晨抽取空腹静脉血5mL,Roche Modular PE全自动生化免疫分析仪检测肝脏功能及血脂水平。结果：高海拔移居者,总胆红素和直接胆红素升高,总胆固醇、低密度脂蛋白降低;特高海拔及以上移居者（〉4500米）,直接胆红素升高,总胆固醇、低密度脂蛋白、载脂蛋白B降低。结论：本文研究结果提示了,高原缺氧环境下,肝脏自身功能抗缺氧发生改变或高原饮食受限可引起肝脏功能变化,进而影响脂类代谢,是机体对长期乏氧状态的适应性改变。     

Spore Germination and Mycelial Growth of Streptomycetes at Different Humidity Levels

This study is the first to show the ability of streptomycetes to develop at a very low humidity level. All of the streptomycetes studied produced growth at low humidity (a_w 0.86 and 0.67). This capacity was most markedly pronounced in Streptomyces odorifer, whose spores were capable of germinating, and mycelial germs increased in length, at the air humidity a_w 0.50. The formation of lateral branches (mycelium branching) at this humidity was noted only in single S. odorifer germs and only after 72 h of incubation. Study of streptomycete growth on an agarized medium with different osmotic pressures, created by various glycerol concentrations in the medium, showed that, at a_w 0.67, the spores of all the streptomycetes studied germinate, producing mycelial germs but not microcolonies. The ecological significance of mycelial prokaryotes in soil microbial communities that develop and function under conditions of extremely low humidity is discussed.     

Grain Size and Seedling Growth of Wheat at Different Ploidy Levels

A study was made of the influence of grain size variation withinand between diploid, tetraploid and hexaploid wheat, on a numberof seedling growth characters. Differences in grain size within the three ploidy levels appearedto be related to total photosynthetic area and dry weight accretionin the seedling. In the diploids there was a positive correlationbetween seed size and total photosynthetic area (r = +0·99,P < 0·01) and total dry weight (r = +0·84,P < 0·05) of the seedling at 10 weeks after emergence.In the tetraploid and hexaploids, seed size was negatively correlatedwith both total photosynthetic area (r = –0·69,P < 0·05 and r = –0·33, P < 0·05for the tetraploids and hexaploids respectively) and total dryweight (r = –0·69, P < 0·05 and r = –0·59,P < 0·05 for the tetraploids and hexaploids respectively),of the seedlings 10 weeks after emergence. The main physiological distinction between the tetraploids andhexaploids appeared to be the superiority of the hexaploidsin rate of leaf appearance and the lower ratio of expanded tounexpanded leaves in the seedling 10 weeks after emergence.The tetraploids, in turn, appeared to be superior to the diploidsin these two characters. Triticum spp., wheat, polyploidy, grain size, photosynthetic area, net assimilation rate, tiller number