Self-organization at the origin of life

The concept of an (M,R) system with organizational invariance allows one to understand how a system may be able to maintain itself indefinitely if it is coupled to an external source of energy and materials. However, although this constitutes an important step towards understanding the difference between a living and a non-living system, it is not clear that an (M,R) system with organizational invariance is sufficient to define a living system. To take a further step towards defining what it means to be alive it is necessary to add to a simple (M,R) system some property that represents its identity, and which can be maintained and modified in subsequent generations.     

Typical Cyclical Behavioural Patterns: The Case of Routines,Rituals and Celebrations

The dynamics inherent to the life activity of all living systems presents itself in the form of regular patterns viewed by the observer as taking place in an extended timeline. Routines, rituals and celebrations, each in their own way, are defined by the typical cyclical behavioural patterns exhibited by individuals embedded in specific semiospheres. The particular nature of these semiospheres will determine the distinct patterns of behaviour to be adopted in different life contexts so that existential functions are fulfilled. The restricted and protected family circle normally provides the initial learning environment where the definition of the individual’s Umwelt (von Uexküll 1909, 1934; Ferreira, Biosemiotics 3(1):107–130, 2010, 2011) his/her meaningful world, starts to take shape. This learning process comprehends the progressive identification of distinct physical entities, the development of basic patterns of physical and social behaviour- the incorporation of basic routines and the assignment of meaning to particular events.     

Autopoiesis: the status of its system logic

The concept of autopoiesis, amended as a system theory, is necessary and sufficient to provide an operational definition of life, a set of criteria by which the living are categorically distinguished from the non-living. Limitations are placed on the domains in which autopoiesis may be exhibited.     

Special features of water structure formation in biosystems according to dielkometric data

Experimental data on dielectric function and dielectric loss tangent in living and non-living water-containing systems have been discussed from the viewpoint of our earlier concept on energy transfer in living systems and the role of water in this process. Estimates have been made of a mean length of fractal quasi-crystals, representing the form of biomolecules hydration in the living system; the expected lengths of these quasicrystals are of order of 1000 H₂O molecules. It is concluded that the peaks at the curve of frequency dependence of dielectric loss tangent in living systems is due to water sub-system, but not biomolecular vibrations.     

Latency of evoked potentials in the tasks involving classification of images after wavelet filtration

We studied the characteristics of evoked potentials recorded during the recognition test based on four types of series of images subjected to the wavelet filtration: images of living objects containing either low frequency or high frequency portion of the spatial frequency spectrum, and imaging of non-living objects in the same two spatial frequency bands. Each subject had to classify the image either by its semantic feature (living–non-living), or by its physical feature (low frequency–high frequency). The purpose of this study was to compare the time characteristics of evoked potentials in these two types of tasks, which provides information on the time characteristics of categorization mechanisms of visual images. Analysis of the latent periods and amplitudes of the components of evoked potentials allowed us to detect the occipital areas of the leads where the early components (up to 170 ms) are associated with spatial and frequency characteristics of the image, the frontal and temporal areas where the components of 170–200 ms correspond to the process of categorization, and the later frontal, central, and parietal areas (300–500 ms) correspond to the process of error detection and the organization of motor response.     

Continu versus discontinu,linéaire versus non linéaire dans l’évolution des espèces

Continuity versus discontinuity, linear versus nonlinear in species evolution. Species evolution is a topic where concepts of continuity and discontinuity have been opposed for two centuries. What is the situation today in biological evolution ? The statistical distribution of appearances and disappearances among rodent species follows power laws, suggesting nonlinearity and fractal structures. Thus, the domain of living beings seems to be extended, through critical physical phenomena, to the analysis of linear versus nonlinear biological phenomena. These observations are consistent with the new scale relativity theory of Nottale, which predicts many domains of resolution in nature separated by scale dependence or scale independence. Despite some scale-dependence particular to various levels of biological organization, the fact that they are also characterized by scale-independence suggests that they could be described by new fundamental laws revealing their potentially fractal and irreversible character. In the proximity of the critical time, specific to each system, the system becomes unstable and fractal, and shows precursor events at an accelerated rate leading up to the critical time. After the critical time, the system shows replicate events, in a decelerating manner. The discontinuous appearance of a number of clades follows a log-periodic law with a middle scale report of 1.73. This law, first applied to earthquakes, stock market crashes, demography, and physical turbulences, and now also being applied with success to macroevolutionary patterns, seems to have a certain universality. To cite this article : J. Chaline, C. R. Palevol 2 (2003).     

Escherichia coli ghosts promote innate immune responses in human keratinocytes

Bacterial ghosts (BGs) as non-living bacterial envelopes devoid of cytoplasmic content with preserved and intact inner and outer membrane structures of their living counterparts have been used to study the ability of their surface components for the induction of antimicrobial peptides and pro-inflammatory cytokines in human primary keratinocytes (KCs). Quantitative real-time PCR analysis revealed that incubation of KCs with BGs generated from wild-type Escherichia coli induced the mRNA expression of antimicrobial psoriasin (S100A7c) in a BGs particle concentration-dependent manner. Using immunoblot analysis we showed that BGs generated from the flagellin-deficient (ΔFliC) E. coli strain NK9375 were as effective as its isogenic wild-type (wt) E. coli strain NK9373 to induce psoriasin expression when normalized to BG particles being taken up by KCs. However, results obtained from endocytic activity of KCs reflect that internalization of BGs is greatly dependent on the presence of flagellin on the surface of BGs. Moreover, BGs derived from wt E. coli NK9373 strongly induced the release of the pro-inflammatory cytokines IL-6 and IL-8, compared to ΔFliC E. coli NK9375 BGs. Taken together, obtained data demonstrate that non-living BGs possessing all bacterial bio-adhesive surface properties in their original state while not posing any infectious threat have the capacity to induce the expression of innate immune modulators and that these responses are partially dependent on the presence of flagellin.     

Homology as a relation of correspondence between parts of individuals

The recognition of correspondences has long been a fundamental activity among systematists. Advocates ofNaturphilosophie, such as Lorenz Oken, drew far-fetched analogies between taxonomic groups and all sorts of other things, including the Persons of the Trinity. They treated change through time either as analogous to an ontogeny or as the product of divinely instituted laws of nature. Darwin changed things by making the taxonomic units strictly historical, implying that they are not classes but rather individuals in a broad metaphysical sense. That means that taxa are concrete, particular things, or wholes made up of parts which are themselves individuals, and that there are no laws of nature for them. Homology is a relationship of correspondence between parts of organisms that are also parts of populations and lineages. It is not a relationship of similarity, and unlike similarity it is transitive. Analogy is a relationship of correspondence between parts of organisms that are members of classes, and is not necessarily due to function. Taxa, like other individuals, can change indefinitely, and the only thing that they must share is a common ancestor. They do not share an essence, Platonic Idea orBauplan, although “conservative characters” may be widespread in them. Iterative homology likewise is a relationship of correspondence, but the nature of that correspondence remains unclear. The difficulties of the homology concept can be overcome by treating phylogenetics and comparative biology in general as historical narrative. From the 46th “Phylogenetisches Symposium”, Jena, Germany, November 20–21, 2004. Theme of the symposium: “Evolutionary developmental biology—new challenges to the homology concept”.     

La pensée de Gisela Pankow autour du concept de lois immanentes du corps

Gisela Pankow’s theoretical and clinical research led her to work out an original method of dynamic structuration for the cure of psychosis and serious mental disorders. She distinguishes two fundamental functions in the living body-image, and according to her master’s views, Ernst Kretschmer, who introduced the difference betweenKernpsychose (nuclear psychosis) andRandpsychose (marginal psychosis). These two functions are “symbolizing” and are relying on the “immanent laws” of the body. Such pankowian concepts are an extension of psychiatric, psychoanalytic and philosophical works which are not well known in ordinary medical circles: we must quote those of Kurt Goldstein, Gustav Siewerth, Gaston Fessard, for example. G. Pannkow uses ordinary words, such as form, sign, symbol, but this may be deceiving, for symbolism is not the same when speaking about forms or about language. Reading these authors reveals the background of these terms and enlightens the pankowian original concept of the living bodyimage, based on a realistic anthropology of the body’s immanent laws. This paper is only a basic introduction to Gisela Pankow’s rich and fruitful research.     

Buzz pollination in eight bumblebee-pollinated Pedicularis species: does it involve vibration-induced triboelectric charging of pollen grains?

MethodsEight sympatric buzz-pollinated species of Pedicularis that share bumblebee pollinator species were studied, giving a rare opportunity to compare sonication behaviour of a shared pollinator on different plant species.ConclusionsSonication behaviour of B. friseanus differs among Pedicularis species, not only because worker bees assort themselves among plant species by body size, but also because bees of a given size adjust the buzz frequency to achieve a vibration velocity corresponding to the floral traits of each plant species. These findings, and the floral traits that characterize these and other buzz-pollinated species, are compatible with the hypothesis of vibration-induced triboelectric charging of pollen grains.     

Power laws without complexity

Power laws have been invoked in describing the sizes of a wide variety of objects in evolution and ecology. The apparent ubiquity of power laws is commonly attributed to a form of complex behaviour called self‐organizing criticality. It is shown that power law behaviour inevitably arises from the statistics of large values from heavy‐tailed distributions and that such distributions can be generated by processes that do not involve self‐organized criticality. It follows that power law behaviour cannot be taken as prima facie evidence of self‐organizing criticality.     

Is it Useful to Have a Clear-cut Definition of Life? On the Use of Fuzzy Logic in Prebiotic Chemistry

Many scientists, including one of the authors of the present paper, have devoted time to try to find a definition for life (Bersini and Reisse 2007). It is clear that a consensus will never be reached but, more importantly, it seems that the issue itself could be without major interest. It is indeed impossible to define a “natural” frontier between non-living and living systems and therefore also impossible to define dichotomic criteria which could be used in order to classify systems in one of these two classes (living or non-living). Fuzzy logic provides a natural way to deal with problems where class membership lacks sharply defined criteria. It also offers the possibility to avoid losing time with unnecessary controversies such as deciding whether a virus is, or is not, a living system.     

Pseudomonas aeruginosa biofilm: Potential therapeutic targets

Pseudomonas aeruginosa is a gram-negative pathogen that has become an important cause of infection, especially in patients with compromised host defense mechanisms. It is frequently related to nosocomial infections such as pneumonia, urinary tract infections (UTIs) and bacteremia. The biofilm formed by the bacteria allows it to adhere to any surface, living or non-living and thus Pseudomonal infections can involve any part of the body. Further, the adaptive and genetic changes of the micro-organisms within the biofilm make them resistant to all known antimicrobial agents making the Pseudomonal infections complicated and life threatening. Pel, Psl and Alg operons present in P. aeruginosa are responsible for the biosynthesis of extracellular polysaccharide which plays an important role in cell–cell and cell–surface interactions during biofilm formation. Understanding the bacterial virulence which depends on a large number of cell-associated and extracellular factors is essential to know the potential drug targets for future studies. Current novel methods like small molecule based inhibitors, phytochemicals, bacteriophage therapy, photodynamic therapy, antimicrobial peptides, monoclonal antibodies and nanoparticles to curtail the biofilm formed by P. aeruginosa are being discussed in this review.     

Children’s Intuitive Teleology: Shifting the Focus of Evolution Education Research

Research has shown that children usually provide teleological explanations for the features of organisms and artifacts, from a very early age (3–4 years old). However, there is no consensus on whether teleological explanations are given in the same manner for non-living natural objects as well. The present study aimed to document the teleological explanations of 5- to 8-year-old children for particular features (color and shape) of organisms, artifacts and non-living natural objects. In addition, it was examined if there was any correlation between these explanations and children’s explanations for the usefulness of those features. Our results indicate a developmental shift in children’s teleological explanations, from a non-selective teleology in pre-school to a selective one in the second grade. In the latter case, children provided teleological explanations mostly for the shape of the feet of organisms and for the shape of artifacts, whereas pre-school children provided teleological explanations for non-living natural objects as well, both for the color and for the shape in all cases. Our results are not conclusive and further research is required, including a larger spectrum of students, since teleology is one of the most important conceptual obstacles in understanding evolution that persists even into adulthood. We conclude by proposing a particular research program for this purpose.     

Sujet politique,sujet psychique. En marge d’un séminaire de psychopathologie historique

A sociologist who cares to know how a society’s political organisation influences the anthropogenesis of individuals will find that the evolution of psychopathological individuals provide a prime vantage point. That evolution shows how pervasive and deeply rooted in society is the psychology of the individual: individuals are unable to escape the social history enveloping their external environments. In this paper, the author underlines that becoming a person in post-modern society, in which socialisation works through extreme individualisation, is a problem: individuals are no longer able to look at themselves from the point of view of the political whole in which they could then find a place. The author argues that new disorders (depression-related fatigue, antisocial violence, aggressive fear of abandonment, hyperkinesis, and others) are signs of failure in personal authonomy. In every case, there is a bipolarity of extreme independence and dependent behaviour. Arguably, these as yet ‘unidentified clinical objects’ can be related to borderline personality disorders, although the latter concept must be re-examined.     

Responses of epidermal cell turgor pressure and photosynthetic activity of leaves of the atmospheric epiphyte Tillandsia usneoides (Bromeliaceae) after exposure to high humidity

It has been well-established that many epiphytic bromeliads of the atmospheric-type morphology, i.e., with leaf surfaces completely covered by large, overlapping, multicellular trichomes, are capable of absorbing water vapor from the atmosphere when air humidity increases. It is much less clear, however, whether this absorption of water vapor can hydrate the living cells of the leaves and, as a consequence, enhance physiological processes in such cells. The goal of this research was to determine if the absorption of atmospheric water vapor by the atmospheric epiphyte Tillandsia usneoides results in an increase in turgor pressure in leaf epidermal cells that subtend the large trichomes, and, by using chlorophyll fluorescence techniques, to determine if the absorption of atmospheric water vapor by leaves of this epiphyte results in increased photosynthetic activity. Results of measurements on living cells of attached leaves of this epiphytic bromeliad, using a pressure probe and of whole-shoot fluorescence imaging analyses clearly illustrated that the turgor pressure of leaf epidermal cells did not increase, and the photosynthetic activity of leaves did not increase, following exposure of the leaves to high humidity air. These results experimentally demonstrate, for the first time, that the absorption of water vapor following increases in atmospheric humidity in atmospheric epiphytic bromeliads is mostly likely a physical phenomenon resulting from hydration of non-living leaf structures, e.g., trichomes, and has no physiological significance for the plant's living tissues.     

Code Biology – A New Science of Life

Systems Biology and the Modern Synthesis are recent versions of two classical biological paradigms that are known as structuralism and functionalism, or internalism and externalism. According to functionalism (or externalism), living matter is a fundamentally passive entity that owes its organization to external forces (functions that shape organs) or to an external organizing agent (natural selection). Structuralism (or internalism), is the view that living matter is an intrinsically active entity that is capable of organizing itself from within, with purely internal processes that are based on mathematical principles and physical laws. At the molecular level, the basic mechanism of the Modern Synthesis is molecular copying, the process that leads in the short run to heredity and in the long run to natural selection. The basic mechanism of Systems Biology, instead, is self-assembly, the process by which many supramolecular structures are formed by the spontaneous aggregation of their components. In addition to molecular copying and self-assembly, however, molecular biology has uncovered also a third great mechanism at the heart of life. The existence of the genetic code and of many other organic codes in Nature tells us that molecular coding is a biological reality and we need therefore a framework that accounts for it. This framework is Code biology, the study of the codes of life, a new field of research that brings to light an entirely new dimension of the living world and gives us a completely new understanding of the origin and the evolution of life.     

Diderot, Cabanis and Lamarck on psycho-physical causality

Modern physics was born in the 17th century and modern biology one century later. Immediately, scientifics and philosophers ask themselves what is the relationship between those two sciences and between properties of non-living and living matter. Among those scientifics and philosophers, some think that mental phenomena are of biological nature--they are materialists--so they encounter a second problem: what is the relationship between properties of non-thinking and thinking living matter? This paper examines the doctrine of three French philosophers of the (post-) Enlightenment on those subjects: Diderot, Cabanis and Lamarck, and, as their answer is in terms of causality and supervenience, I compare succinctly their doctrine with those of Searle and Kim.