A stereocontrolled synthetic approach to glycopeptides corresponding to the carbohydrate-protein linkage region of cell-surface proteoglycans

The glycopeptides 1

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and 2

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), carrying the core structure of serine-linked cell-surface proteoglycans were synthesized in a stereocontrolled manner. The carbohydrate key imidate xylosyl donors 3 and glycotetraosyl donors 4 and 5, as well as a tetrapeptide glycosyl acceptor 6, were coupled in the crucial glycosylation step. In these reactions, the application of either trimethylsilyl trifluoromethanesulfonate (TMSOTf) or borontrifluoride etherate (BF₃-Et₂O) as catalysts proved to be highly efficient. The serine linked glycopeptides 34, 36 and 37 thus obtained yielded target compounds 1 and 2 on complete deprotection.     

An efficient synthesis of methyl tetra-o-hexyl gentiooctaoside, an octaosyl analogue of ANP receptor antagonist HS-142-1

Methyl

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, a 3-O hexyl analogue of the octaosyl component of fungal lipooligosaccharide HS-142-1, was stereo- and regioselectively synthesized as a potent antagonist for the tetrameric atrial natriuretic peptide (ANP) receptors.     

Regio- and enantioselective reduction of methyleneketoesters mediated by Saccharomyces cerevisiae

Methyleneketoesters were readily prepared in high yields by performing a direct -methylenation of the corresponding ketoesters using a previously described protocol. Reactions of ethyl 2-methylene-3-oxo-3-arylpropanoates 2a–c catalyzed by S. cerevisiae were performed with good conversions to give reductions of the CC, CO or both, depending on the reaction conditions and on the substitution of the aryl moiety. Reaction of 3-methylene-2-oxo-4-phenylbutyrate 2d was carried out with free yeast cells and with yeast cells immobilized with calcium alginate, in which the major products resulted from CC and CO bond reduction.

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Synthesis of precursors for the dimeric 3-O-SO3Na Lewis X and Lewis A structures

Stereoselective syntheses of 3-O-SO₃Na-β-Gal-(1 → 4)-β-GlcNAc-(1 → 3)-β-Gal-(1 → 4)-GlcNAc-β-OBn (15) and 3-O-SO₃Na-β-Gal-(1 → 3)-β-GlcNAc-(1 → 3)-β-Gal-(1 → 3)-β-GlcNAc-(1 → 3)-β-Gal-(1 → 4)-Glc-β-OBn (25) were accomplished through the use of two novel glycosyl donors, namely, ethyl

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(8) and ethyl

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(18).     

Effet de la longueur d'onde de préillumination sur la désactivation des formes oxydées du donneur d'électrons du Photosystème II

Effect of preillumination wavelength on the deactivation of oxidized forms of the Photosystem II electron donor

Deactivation was studied using chlorella cells or spinach chloroplasts after an illumination of different wavelengths (light I = 710 nm, light II = 650 or 480 nm). The measurements concerned mainly the third oxidized state S₃ of the System II electron donor, according to the scheme proposed by

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, (Photochem. Photobiol., 11 (1970)457). The time course of deactivation was followed during the dark after each preillumination. Different results were obtained with algae in state 1 or state 2 as defined by

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, (Biochim. Biophys. Acta, 189 (1969) 366). In state 1 the deactivation of S₃ is faster after light 11 than after light 1; in state 2, except at the beginning of the decay, the deactivation of S₃ is almost the same after the two kinds of preillumination. With chloroplasts the deactivation is slower, but always faster after light II than after light I, no transition between state 1 and state 2 was observed. The results are discussed with reference to the possible reducing substrates of the reaction.     

Synthesis of enantiomerically pure lysophosphatidylinositols and alkylphosphoinositols

A convenient synthesis for enantiomeric pure

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,

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(or and (or has been described. Starting from myo-inositol, penta-O-acetyl-myo-inositol was made in five steps. Then enantiomeric purification was done by a diastereomeric salts separation method, and the purity of each enantiomer was spectroscopically measured (¹⁹F-NMR). The phosphodiester was made via phosphoramidites. The enantiomeric products (>99% optical purity) of all compounds were easily obtained in large quantities (5–10 g). Synthetic phosphatidylinositol analogues of precisely defined structure and configuration are interesting tools for studying signal transduction mechanism and cell activity modulation.     

Cross-flow Microfiltration of Saccharomyces cerevisiae

A model which predicts the filtrate flux and the pressure drop over the length of a cross-flow hollow-fibre microfilter is presented. Data from a series of 128 experimental runs were fitted using a multi-variable, non-linear regression program. Average errors of less than 10% were found. The final equations of average flux and pressure drop were:

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The structure of the exopolysaccharide of Pseudomonas fluorescens strain H13

An acidic exopolysaccharide was isolated from P. fluorescens strain H13. The structure of the polysaccharide repeating unit was determined using chemical methods and 1D and 2D NMR techniques. The repeating unit was characterized as a trisaccharide composed of -glucose, 2-acetamido-2-deoxy- -glucose and

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acid.     

Insertion of isocyanides into Re---C bonds

Isocyanide-substituted Re alkyl complexes cis-p-XC₆H₄CH₂Re(CO)₄(CN-p-tolyl) (X = Cl, OMe) were prepared from the PdO-catalyzed reaction of p-XC₆H₄CH₂Re(CO)₅ (X = Cl, OMe) with p-tolyl isocyanide. On heating in toluene these complexes undergo isocyanide insertion into the Re---C bond to afford iminoacyl complexes which further react to orthometallate the p-tolyl ring. An X-ray crystal structure determination on (CO)₄

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(3a) revealed that C₁₉H₁₃ClO₄NRe crystallizes in the monoclinic space group P2₁/c with 4 formulas per unit cell. Unit cell parameters are a = 9.799 (1), B = 15.252 (2), C = 13.569 (2) Å and β = 110.788 (8)°. The structure shows Re---C bond distances indicative of substantial carbenoid character.     

A metal ion-based method for the screening of nitrilases

In this paper we describe a colorimetric method for the screening of nitrilases. When a buffered solution of CoCl₂ is added to a nitrilase-catalyzed hydrolysis reaction, the ammonia product forms a complex with the cobalt ion resulting in a color change from light pink to yellow, which can readily be quantified using a spectrophotometer at 375 nm. This method has been demonstrated for both wild-type and evolved nitrilases.

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The synthesis and characterization of a cationic technetium(V) phenylimido complex. The X-ray crystal structure of [TcCl2(NPh)(PMe2Ph)3](BPh4)

The reaction of the neutral Tc(V) phenylimido complex [TcCl₃(NPh)(PPh₃)₂] with excess PMe₂Ph in refluxing MeOH gives the cationic, tris-dimethylphenylphosphine complex [TcCl₂(NPh)(PMe₂Ph)₃]⁺, which is isolated as the tetraphenylborate salt. The IR spectrum of the crystalline product shows a medium intensity band at 1102 cm⁻¹ which is assigned to ν(TcN) from the phenylimido core. The ¹H NMR spectrum of the diamagnetic complex shows a series of multiplets in the aryl region and three distinct signals near 2 ppm from the phosphine methyl groups. The X-ray crystal structure, which is the first for a cationic technetium organoimido complex, shows a meridional arrangement of phosphine ligands with a chloride ligand coordinated trans to the phenylimido unit. The TcN bond length of 1.711(2) Å is consistent with the dianionic nature of the organonitrogen core. The Tc---N---C bond angle of 178.8(2)° reflects the sp hybridization of the phenylimido nitrogen atom. The coordination geometry is best described as a distorted octahedron. Crystal data for C₅₄H₅₈BCl₂NP₃Tc: triclinic space group

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. Structure solution based on 9986 observed reflections converged at R = 3.65%, R_w = 5.43%, GOF = 1.82.     

Structural studies of the O-antigen from Vibrio cholerae O:21

The O-antigen from Vibrio cholerae O:21 has been investigated, using n.m.r. spectroscopy, methylation analysis, and Smith degradation as the main methods. It is concluded that the O-antigen is composed of tetrasaccharide repeating-units having the following structure (in which Hep = -glycero- -manno-heptose).

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The PHBH fold: Not only flavoenzymes

p-Hydroxybenzoate hydroxylase,

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-amino acid oxidase, cholesterol oxidase and glucose oxidase form a family of structurally related flavoenzymes. Comparison of their three-dimensional structures reveal how the same FAD-binding scaffold has been employed to implement diverse active-site architectures, suited for different types of catalytic reactions. The substrate binding mode differs in each of these enzymes, with the catalytically relevant residues not located on homologous positions. A common feature is provided by the ability of these enzyme to bury their substrates beneath the protein surface. In

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-amino acid oxidase and cholesterol oxidase, a loop forms a ‘lid’ controlling the active site accessibility, whereas in p-hydroxybenzoate hydroxylase is the flavin itself, which swings out to allow substrate binding. The crystallographic analysis has revealed that the GTP-dissociation inhibitor of RAB GTPases has a folding topology remarkably similar to p-hydroxybenzoate hydroxylase. This finding highlights the versatile nature of this folding topology, which in addition to flavin-dependent catalysis, is suited for diverse functions, such as the regulation of GTPases.     

Structure of a rhamnan from the surface-layer glyco-protein of Bacillus stearothermophilus strain NRS 2004/3a

The structure of a glycan from the surface-layer glycoprotein of Bacillus stearothermophilus strain NRS 2004/3a has been studied by ¹H- and ¹³C-n.m.r. spectroscopy. The results indicate the glycan to be a polymer of the trisaccharide repeating-unit

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Correlation of structure and emission in solid state copper(I) complexes; [Cu4I4(CH3CN)2(L)2], L = aniline derivative

Four complexes of the type [Cu₄I₄(CH₃CN)₂(L)₂], L = aniline derivative: Cu₄I₄(CH₃CN)₂(2,6-dimethylaniline)₂ (I), triclinic, , a = 12.449(3), B = 14.108(6), C = 10.606(4) Å, = 73.46(3), β = 95.00(2), γ = 73.42(3)°, V = 1682.3(10) ų; Cu₄I₄(CH₃CN)₂(o-ethylaniline)₂ (II), triclinic,

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, V = 1734.0(8) ų; Cu₄I₄(CH₃CN)₂(6-ethyl-o-toluidine)₂ (III), orthorhombic, Pnam, a = 14.976(6), b = 21.187(6), C = 12.545(2) Å, V = 3980.7(2) ų; Cu₄I₄(CH₃CN)₂(p-anisidine)₂ (IV), monoclinic, A2/a, A = 20.032(10), B = 7.863(1), C = 18.715(9) Å, β = 101.56(4)°, V = 2888.0(2) ų; were examined by single crystal X-ray diffraction. Complexes I and II have no internal symmetry elements, III has an internal mirror and IV has a two-fold axis. Ab initio calculations based on the atomic positional parameters of complexes containing the three types of symmetry elements reveal HOMO orbitals to be dominated by the p orbitals of the iodine atoms whereas the LUMO orbitals contain major contributions from copper based p orbitals.     

Changes in the c.d. spectra of calf thymus DNA induced by sequential polypeptides in trifluoroethanol solutions. Part II

Interactions between calf thymus DNA and ( -Arg-X-Gly)_n sequential polypeptides (where

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) in trifluoroethanol: water (40:60) solutions in the salt range of 0.12—0.5 NaCl, were studied using c.d. spectroscopy. It was found that DNA tertiary structure (ψ form) is modulated by the nature of the polypeptides (variation of X residue). The effect of the secondary structure of polypeptides on the formation of ψ-DNA was also analysed. Unordered polypeptides destabilized ψ aggregates, while helical polypeptides favoured DNA tertiary structure. A loss of tertiary structure was observed in the presence of the ( -Arg- -Val-Gly)_n, which can be attributed to the ability of valine to suppress ψ-type DNA.     

Synthesis and anti-HIV activity of oleanolic acid derivatives

Thirteen oleanolic acid derivatives were prepared and evaluated for anti-HIV activity in H9 lymphocytes. Saturating the C₁₂–C₁₃ double bond and converting the C₁₇-carboxyl group to an aminomethyl group led to compounds 13– 15 and 19– 20, respectively, which showed improved anti-HIV activity. Compound 15 was the most potent derivative with EC₅₀=0.0039 μg/mL and TI=3570.     

Synthesis and structure determination of some platinum (II) complexes with hydrophilic carboxylated tertiary phosphine ligands

[Pt(COD)Cl₂] (1) reacts with PPh₂(C₆H₄COOH) (2a,b,c), PPh₂(C₆H₄COONa) (2d), PPh(C₆H₄COOH)₂ (4b,c) and P(C₆H₄COOH)₃ (6b,c) with formation of the corresponding complexes [Pt(L)₂Cl₂] (3a,b,c,d, 5b,c, 7b,c). Halide abstraction from 3a by Ag⁺ promotes coordination of the ortho-carboxylate function to platinum, yielding [ -2)}{PPh₂(C₆H₄COOH-2)}Cl] (bd8) and [ovbar|{PPh₂(C₆H₄COO-2)}₂] (bd9). Reaction of 1 with CO and 2a or 2b gives [Pt(CO)(L)Cl₂] (10a,b), wherea 1 and 2,3-bis(diphenylphosphino) maleic anhydride yields

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(bd12) and [Pt{Ph₂PC(COOH)=C(COOMe)-PPh₂}Cl₂] (13). The ¹H, ¹³C and ³¹P NMR spectra are reported and discussed. The X-ray structural analysis of 3b showed the compound to be monoclinic, space group P2₁/n, Z=4, with a=1038.5(3), B=1792.6(4), C=2311.5(4) pm, β=91.6(2)° and D_calc=1.353 g cm⁻³. The structure was solved from 4832 observed reflections with F₀ > 4 σ(F₀) and refined to a final R value of 0.0743. The Pt atom is surrounded by two Cl and two P atoms in a square planar arrangement.     

Light-induced absorbance changes in Fraction I particles prepared from spinach chloroplasts by French-press treatment

Light-induced changes of absorbance were measured in Fraction 1 particles prepared from spinach chloroplasts according to a method developed by

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⁶ that employs breakage of chloroplasts in the French pressure cell and centrifugation of the resulting fragments on a sucrose density gradient. Absorbance changes were measured in the presence of ascorbate and 2,3,5,6-tetramethyl-1,4-phenylenediamine as an electron donating system. In addition to the oxidation of P₇₀₀ and cytochrome f, that was investigated in our previous study¹¹, three other light-induced absorbance changes were observed; reduction of cytochrome b with a peak at 562 nm, the so-called 515-nm change showing an absorbance increase at 515 nm and a decrease at 480 nm, and a broad band of unknown absorbance increase covering wave-lengths from 490 to 570 nm. Uncouplers such as carbonylcyanide-m-chlorophenylhydrazone and gramicidin D inhibited the 515-nm change under continuous light and accelerated the dark decay of flash-light-induced change. The other broad absorbance change was insensitive to these inhibitors.