Heterozygotes of three-factor crosses of bacteriophage T4

Summary A significant proportion of the recombinants from three-factor crosses between closely linked rII mutants of bacteriophage T4 are heterozygous. Several types of heterozygotes were identified with respect to the type of markers in the heterozygous area. The distribution of the heterozygotes among the types depends on whether the central marker was a deletion or point mutation. In the case of point mutation the majority of the heterozygotes involved the central marker while in the case of deletion most of the heterozygotes involved the double mutation (side markers). The data obtained are explained assuming that recombinants from three-factor crosses arise through insertion of single stranded DNA fragment of the double mutant into the DNA of the central mutant and that extensive correction of deletion heteroduplexes takes place.     

Heterozygous expression of insulin-dependent diabetes mellitus (IDDM) determinants in the HLA system.

HLA phenotypes of cases with insulin-dependent diabetes mellitus (IDDM) and identity by descent of HLA haplotypes in affected sib-pairs support an intermediate model in which morbid risk is increased by one HLA-linked IDDM determinant, and greatly increased by two determinants, which may be qualitatively different in DR3 and DR4 haplotypes. Linkage analysis allowing for gametic disequilibrium reveals no recombination in pedigrees with a DR3/DR4 propositus, but spurious recombination in the remaining pedigrees. This evidence favors interaction of unlinked IDDM determinants to produce affection in a small proportion of heterozygotes for an HLA-linked determinant. Partition of data by HLA type of the propositus (ideally by DR and the complement types jointly) is a powerful method to resolve etiological heterogeneity for HLA-associated diseases.     

Autosomal-dominant osteopetrosis in Chuvashiya

A genetic epidemiological study of osteopetrosis was carried out in Chuvashiya. The major signs of this disorder are severe anemia developed in the prenatal or early postnatal life, hepatosplenomegaly, and a progressive loss of sight and hearing. Osteopetrosis showed the autosomal recessive inheritance with a somewhat increased proportion of affected patients in families. The lowest estimate of osteopetrosis frequency in Chuvashiya was 0.00026, one affected patient per 3879 newborns. The osteopetrosis gene occurred at a frequency of 0.016; the proportion of heterozygotes was 3.15%. The gene was shown to be evenly distributed throughout the republic.     

Autosomal Recessive Osteopetrosis in Chuvashiya

A genetic epidemiological study of osteopetrosis was carried out in Chuvashiya. The major signs of this disorder are severe anemia developed in the prenatal or early postnatal life, hepatosplenomegaly, and a progressive loss of sight and hearing. Osteopetrosis showed the autosomal recessive inheritance with a somewhat increased proportion of affected patients in families. The lowest estimate of osteopetrosis frequency in Chuvashiya was 0.00026, one affected patient per 3879 newborns. The osteopetrosis gene occurred at a frequency of 0.016; the proportion of heterozygotes was 3.15%. The gene was shown to be evenly distributed throughout the republic.     

Comparison of trapping for eggs, females, and males of the naval orangeworm (Lepidoptera: Pyralidae) in almonds

The navel orangeworm is the primary insect pest of almonds in California, and egg traps are the primary means of monitoring this pest. A previous study found that the current use of 2-4 traps per 64 ha block usually is not sufficient to provide management information specifically for that block. In this study, we compare data from large grids of egg traps in varied commercial almond orchards with trapping data for females and males, with the objective of finding a more cost-effective monitoring program using currently available attractants. The proportion of egg traps with eggs was highly correlated with mean eggs per egg trap, and with females and males trapped simultaneously at the same location. Almond variety and the type of bait used had little impact on the relationship between the proportion of egg traps with eggs and the number of eggs per traps. Traps in orchards with more unharvested (mummy) almonds had more eggs, suggesting that navel orangeworm abundance affected traps more than competition from mummies. Laboratory experiments comparing age-specific oviposition in two-choice and no-choice situations found that younger, more fecund females laid a greater proportion of eggs on the preferred substrate in a two-choice situation, but that age-specific fecundity was not different between substrates in no-choice tests. These findings indicate that the proportion of egg traps with eggs provides a more stable indication of navel orangeworm phenology than mean eggs per trap. We suggest that similar information could be obtained in a more cost-effective manner with female trapping.     

Usefulness of erythrocyte ferritin analysis in hereditary hemochromatosis.

A study was carried out to determine the usefulness of erythrocyte ferritin analysis in identifying homozygotes and heterozygotes in families affected with hereditary hemochromatosis, an autosomal recessive disorder. To select the subjects the genotypes of 60 people from 26 affected families were determined by HLA-A and HLA-B haplotyping. In addition, data for 12 homozygotes for whom erythrocyte ferritin values were available from the literature were included. Likelihood analysis was used to evaluate the diagnostic value of erythrocyte ferritin analysis alone and in combination with serum ferritin testing. An erythrocyte ferritin value of 150 ag/cell or higher combined with a serum ferritin level above the 90th percentile indicated homozygosity, whereas a value of less than 150 ag/cell and a serum ferritin level at or below the 90th percentile indicated that homozygosity could be ruled out with a high degree of confidence. The probability of heterozygosity rose to 92% when the erythrocyte ferritin value was between 29 and 149 ag/cell and to 98% when this result was combined with a serum ferritin level at or below the 90th percentile. Erythrocyte ferritin analysis in combination with serum ferritin testing is useful for identifying homozygotes and a proportion of heterozygotes in families affected with hemochromatosis.     

APOB‐associated cholesterol deficiency in Holstein cattle is not a simple recessive disease

In 2015, cholesterol deficiency (CD) was reported for the first time as a new recessive defect in Holstein cattle. After GWAS mapping and identification of a disease‐associated haplotype, a causative loss‐of‐function variant in APOB was identified. CD‐clinically affected APOB homozygotes showed poor development, intermittent diarrhea and hypocholesterolemia and, consequently, a limited life expectation. Herein, we present a collection of 18 cases clinically diagnosed as CD‐affected APOB heterozygotes. CD‐clinically affected heterozygotes show reduced cholesterol and triglyceride blood concentrations. The differences in total blood cholesterol and triglycerides between nine CD‐clinically affected and 36 non‐affected heterozygotes were significant. As only some APOB heterozygotes show the clinical CD phenotype, we assume that the penetrance is reduced in heterozygotes compared to the fully penetrant effect observed in homozygotes. We conclude that APOB‐associated CD represents most likely an incomplete dominant inherited metabolic disease with incomplete penetrance in heterozygotes.     

Effects of reproductive compensation and genetic drift on X-linked lethals

A revival of interest in Haldane's equilibrium theory for X-linked lethals has been stimulated by the introduction of accurate tests for the detection of female heterozygotes in Lesch-Nyhan disease. Application of these tests appears to indicate an excess of familial cases. This excess can be attributed to ascertainment bias, a difference in female and male mutation rates, genetic drift, and reproductive compensation. Reproductive compensation will be particularly effective in increasing the proportion of familial cases if (1) birth control is widespread; (2) selection against affected males acts in utero; (3) affected sons show symptoms at an early age; and (4) sons are more highly valued than daughters. We demonstrate how only a few generations of reproductive compensation are sufficient to achieve an approximate equilibrium between selection and mutation showing a high proportion of familial cases. We also discuss the random fluctuations around equilibrium caused by genetic drift.     

Carbonic anhydrase heterozygosity and FST distributions in Kenyan baboon troops

An analysis of the distribution of carbonic anhydrase alleles in troops of olive baboons, Papio cynocephalus, is reported. In an earlier study (Olivier, T. J., J. Buettner-Janusch and V. Buettner-Janusch, 1974, Am. J. Phys. Anthrop., 41: 175–190) the authors found a significant excess of heterozygotes with a large amount of intertroop differentiation at the CA II locus. If balancing selection is acting on the CA II locus and maintaining an excess of heterozygotes, then the degree of local differentiation observed at this locus is unexpected. In this study the analyses of the CA I and CA II data are extended and some idiosyncratic features of baboon population structure are considered. Non-idealized forms of behavior, such as adult male migration and other age-specific and sex-specific behaviors, may affect observed patterns of gene frequency distributions. The analysis reveals that the excess of heterozygotes at the CA II locus is localized in the females only and that the males are highly differentiated among the troops. These findings suggest that a female-limited heterozygous advantage exists at the CA II locus in this baboon population. A computer simulation model, RAMBLE, further suggests that recurrent male migration between troops may explain the intertroop microdifferentiation found in primate populations.     

Dynamics of Specific Anti-Mycobacterium avium Subsp. paratuberculosis Antibody Response through Age

Mycobacterium avium subsp. paratuberculosis (MAP) causes a chronic infection in cattle. MAP infected cattle with humoral immune (HI) reactions with IgG antibodies are usually those where latency of infection has ceased and their infection is progressing towards reduced milk yield, weight loss and significant bacterial excretion in feces. The proportion of detectable infections among all infected animals that will develop disease is often referred to as ‘the tip of the iceberg’. The purpose of this study was to estimate this proportion. Test-records from 18,972 Danish dairy cows with MAP specific IgG antibodies on their final test-record were used to estimate age-specific sensitivities (Se). These cows were the infected ones considered to develop disease in a population with a representative age-distribution and were defined as cases. The specificity (Sp) of the test was estimated based on test-results from 166,905 cows, which had no MAP IgG antibodies in their final four test-records. The Sp, age-specific Se and maximum Se were used to estimate the probability of having HI at a given age resulting in the proportion of infected cows with HI at a given age. For cows 2 years of age, the proportion of detectable cases was 0.33, while it was 0.94 for cows 5 years of age. Thus, there was a significant shift in the tip of the iceberg with aging. This study provided a model for estimating the proportion of latent chronic infections that would progress to disease, and the results can be used to model infection dynamics.     

Correcting for variable age of onset in the estimation of familial relative risk when there is a secular trend in incidence of disease

We discuss the effects that a secular trend in incidence would have on estimation of familial relative risk (ratio of observed to expected cumulative incidence among relatives of index cases). For example, when age-specific incidence rates of a condition have increased during the lifetimes of relatives among whom relative risk is to be estimated, familial relative risk will be biased downward if cross-sectional, age-specific incidence data are used to estimate expected cumulative incidence among relatives. The stronger the trend and the older the ages of unaffected relatives, the greater the bias will be. Incorporating different age-specific incidence curves for different birth cohorts into the analysis is an approach we suggest for correcting the bias.     

Assessment of chronic gamma radiosensitivity as an in vitro assay for heterozygote identification of ataxia-telangiectasia

Ataxia-telangiectasia (A-T) is a rare human autosomal recessive disorder characterized by, among other symptoms, catastrophic reaction to conventional radiotherapy. A-T heterozygotes are clinically asymptomatic and their fibroblasts are intermediate in radiosensitivity between homozygotes and normals. We have attempted to identify heterozygotes by assaying for cellular hypersensitivity to chronic gamma irradiation. Cultured dermal fibroblast strains from 13 control subjects and 55 members from a large Amish pedigree segregating for A-T were assayed for loss of colony-forming ability (CFA) in response to 137Cs gamma radiation delivered at a dose rate of 0.8 cGy/min. For each strain, multiple dose-response curves were summarized in a composite D10 value (dose, in cGy, reducing colony survival to 10%). The D10's of the clinically normal controls and of those pedigree members with known A-T genotype formed a trimodal distribution, with the seven obligate heterozygotes displaying an average value (516 cGy) intermediate between that of the 10 healthy controls (797 cGy) and that of the two affected patients (154 cGy). The D10's were modeled statistically using Gaussian penetrance functions. The most parsimonious model yielded a significant difference in D10 means for heterozygotes and normal homozygotes, a significant donor age effect, but no sex effect. We compared probabilistic identification of heterozygotes based on D10 values with identification based on linkage data for two markers, THY1 and D11S144, closely linked to the A-T gene. This comparison revealed that the D10 data were appreciably less informative than the linked markers. Indeed, the extensive overlap between D10 values for heterozygotes and normal homozygotes precludes the use of postirradiation CFA for either accurate identification of heterozygotes or chromosomal mapping of the A-T gene.     

Cystic fibrosis heterozygote screening in 5,161 pregnant women.

A screening program for cystic fibrosis (CF) heterozygotes was conducted in a large HMO prenatal population, to evaluate the level of interest among eligible patients, the effectiveness of prescreening education, attitudes toward the screening process, psychological effects, and utilization of prenatal diagnosis and its outcomes. The heterozygote identification rate and frequency of specific CFTR mutations were also assessed. Identified carriers were offered genetic counseling and testing of male partners. Prenatal diagnosis was offered if both parents were identified as carriers. A total of 5,161 women underwent carrier testing; 947 others completed survey instruments only. The acceptance rate of screening was high (78%), and pretest education by videotape was generally effective. Adverse psychological effects were not reported. Participants generally found screening to be desirable and useful. Screening identified 142 female heterozygotes, 109 couples in which the male partner was not a carrier, and 7 high-risk couples. The incidence of R117H mutations was much higher than expected. The number of identified carriers was much lower in Hispanics than in Caucasians. We conclude that large-scale prenatal screening for CF heterozygotes in the absence of a family history of CF is an acceptable method for identifying couples at risk for affected fetuses. Sufficient pretest education can be accomplished efficiently, test insensitivity is well accepted, adverse psychological events are not observed, and general patient satisfaction is high.     

Multiple imputation for estimating the risk of developing dementia and its impact on survival

Dementia, Alzheimer's disease in particular, is one of the major causes of disability and decreased quality of life among the elderly and a leading obstacle to successful aging. Given the profound impact on public health, much research has focused on the age-specific risk of developing dementia and the impact on survival. Early work has discussed various methods of estimating age-specific incidence of dementia, among which the illness-death model is popular for modeling disease progression. In this article we use multiple imputation to fit multi-state models for survival data with interval censoring and left truncation. This approach allows semi-Markov models in which survival after dementia depends on onset age. Such models can be used to estimate the cumulative risk of developing dementia in the presence of the competing risk of dementia-free death. Simulations are carried out to examine the performance of the proposed method. Data from the Honolulu Asia Aging Study are analyzed to estimate the age-specific and cumulative risks of dementia and to examine the effect of major risk factors on dementia onset and death.     

Regional variation in the age-specific natural fertility curve

This paper examines the question of whether there are consistent regional variations in the level and shape of the age-specific natural fertility curve using data for 45 less-developed countries drawn from a recent US Census Bureau compilation. The 45 countries were grouped into 4 regional categories: sub-Saharan Africa; Middle East and North Africa; South and Southeast Asia; and Latin America. In general there do not appear to be variations. A consistent age pattern of natural fertility emerges, once the rates have been normalized and an adjustment made for age at 1st exposure to the risk of pregnancy. The results strongly support Coale's original natural fertility paradigm. The differences in the absolute fertility rates among the 4 regions correspond to the differences in proportion of females aged 15 and over who are currently married. The differences among 3 of the regions are relatively small whereas sub-Saharan Africa's proportion currently married is significantly higher.     

Effective size of harvested ungulate populations

The harvest of ungulate populations is often directed against certain sex or age classes to maximize the yield in terms of biomass, number of shot animals or number of trophies. Here we examine how such directional harvest affects the effective size of the population. We parameterize an age-specific model assumed to describe the dynamics of Fennoscandian moose. Based on expressions for the demographic variance     for a small subpopulation of heterozygotes Aa bearing a rare neutral allele a , we use this model to calculate how different harvest strategies influence the effective size of the population, given that the population remains stable after harvest. We show that the annual genetic drift, determined by     , increases with decreasing harvest rate of calves and increasing sex bias in the harvest towards bulls 1 year or older. The effective population size per generation decreased with reduced harvest of calves and increased harvest of bulls 1 year or older. The magnitude of these effects depends on the age-specific pattern of variation in reproductive success, which influences the demographic variance. This shows that the choice of harvest strategy strongly affects the genetic dynamics of harvested ungulate populations.     

Electrophoretic evidence for disomic inheritance and allopolyploid origin of the octoploid Cerastium alpinum (Caryophyllaceae)

The mode of inheritance of six enzyme markers in the octoploid alpine plant Cerastium alpinum was analyzed. Offspring from crosses between heterozygotes showed fixed heterozygosity at malate dehydrogenase-2, phosphoglucoisomerase-2, triosephosphate isomerase-2, and triosephosphate isomerase-3. Phosphoglucomutase-1 also showed fixed heterozygosity except in offspring from one cross. Fixed heterozygosity in five enzyme systems suggests that C. alpinum has originated through at least some allopolyploidization. Offspring from plants heterozygous for two alleles at the menadione reductase-1 (Mr-1) locus did not deviate significantly from a 1:2:1 ratio. The large proportion of homozygotes suggests disomic inheritance because any kind of polysomic inheritance would result in a substantially increased proportion of heterozygotes relative to disomic inheritance. Assuming a diploid model for Mr-1, this locus was used to analyze the population genetic structure within C. alpinum populations. Inbreeding was found in many alpine populations. This may help explain the large genetic distances found among alpine populations in a previous study. The analysis is only based on one segregating locus, and the results should therefore be treated with caution. However, by establishing the mode of inheritance through crosses, we have been able to use a codominant marker in population genetic analysis of an octoploid plant.     

Inbreeding depression and male survivorship in Drosophila: implications for senescence theory

The extent to which inbreeding depression affects longevity and patterns of survivorship is an important issue from several research perspectives, including evolutionary biology, conservation biology, and the genetic analysis of quantitative traits. However, few previous inbreeding depression studies have considered longevity as a focal life-history trait. We maintained laboratory populations of Drosophila melanogaster at census population sizes of 2 and 10 male-female pairs for up to 66 generations and performed repeated assays of male survivorship throughout this time period. On average, significant levels of inbreeding depression were observed for median life span and age-specific mortality. For age-specific mortality, the severity of inbreeding depression increased over the life span. We found that a baseline inbreeding load of 0.307 lethal equivalents per gamete affected age-specific mortality, and that this value increased at a rate of 0.046 per day of the life span. With respect to some survivorship parameters, the differentiation of lineages was nonlinear with respect to the inbreeding coefficient, which suggested that nonadditive genetic variation contributed to variation among lineages. These findings provide insights into the genetic basis of longevity as a quantitative trait and have implications regarding the mutation-accumulation evolutionary explanation of senescence.     

An analysis of heterozygote fitness by the genes for autosomal-dominant diseases taking into account the parameters of penetrance and expressivity

The general methodology of analysis of the fitness of different genotypes is given. It is based on the consideration of the total group of the heterozygotes' heterogeneity in the differential fertility, due to incomplete penetrance and age-specific expressivity of the gene. The approach makes it possible to determine specific contribution of the different subgroups to the general amount of the heterozygotes by means of differential functions of morbidity and mortality. The computation on the fitness is performed using the birth rate within these subgroups, in relation to the general population. The model is represented in two variants, continuous and discrete, each of them describing the general case and a number of particular cases.