Impact of Dilute Sulfuric Acid,Ammonium Hydroxide,and Ionic Liquid Pretreatments on the Fractionation and Characterization of Engineered Switchgrass

Improving plant characteristics for better environmental resilience and more cost-effective transformation to fuels and chemicals is one of the focus areas in biomass feedstock development. In order to bridge lignin engineering and conversion technologies, this study aimed to fractionate and characterize lignin streams from wild-type and engineered switchgrass using three different pretreatment methods, i.e., dilute sulfuric acid (DA), ammonium hydroxide (AH), and aqueous ionic liquid (IL). Results demonstrate the low lignin content and high S/G ratio switchgrass mutant (4CL) was more susceptible to pretreatment and subsequently more digestible by enzymes as compared to wild-type switchgrass and AtLOV1 mutant. In addition, when compared to DA and AH pretreatment, aqueous IL (cholinium lysinate) was demostrated to be an efficient lignin solvent, as indicated by the high (> 80%) lignin solubility and reduced lignin molecular weight. FTIR and differential scanning calorimetry measurements suggest that pretreatment chemistry greatly influenced the structural and compositional changes and thermal properties of the pretreated switchgrass and recovered lignin-rich streams. The comparative data obtained from this work deepen our understanding of how lignin modification impacts the fractionation and properties of biomass feedstocks.     

Developmental Control of Lignification in Stems of Lowland Switchgrass Variety Alamo and the Effects on Saccharification Efficiency

The switchgrass variety Alamo has been chosen for genome sequencing, genetic breeding, and genetic engineering by the US Department of Energy Joint Genome Institute (JGI) and the US Department of Energy BioEnergy Science Center. Lignin has been considered as a major obstacle for cellulosic biofuel production from switchgrass biomass. The purpose of this study was to provide baseline information on cell wall development in different parts of developing internodes of tillers of switchgrass cultivar Alamo and evaluate the effect of cell wall properties on biomass saccharification. Cell wall structure, soluble and wall-bound phenolics, and lignin content were analyzed from the top, middle, and bottom parts of internodes at different developmental stages using ultraviolet autofluorescence microscopy, histological staining methods, and high-performance liquid chromatography (HPLC). The examination of different parts of the developing internodes revealed differences in the stem structure during development, in the levels of free and well-bound phenolic compounds and lignin content, and in lignin pathway-related gene expression, indicating that the monolignol biosynthetic pathway in switchgrass is under complex spatial and temporal control. Our data clearly show that there was a strong negative correlation between overall lignin content and biomass saccharification efficiency. The ester-linked p-CA/FA ratio showed a positive correlation with lignin content and a negative correlation with sugar release. Our data provide baseline information to facilitate genetic modification of switchgrass recalcitrance traits for biofuel production.     

Downregulation of Cinnamyl Alcohol Dehydrogenase (CAD) Leads to Improved Saccharification Efficiency in Switchgrass

The bioconversion of carbohydrates in the herbaceous bioenergy crop, switchgrass (Panicum virgatum L.), is limited by the associated lignins in the biomass. The cinnamyl alcohol dehydrogenase (CAD) gene encodes a key enzyme which catalyzes the last step of lignin monomer biosynthesis. Transgenic switchgrass plants were produced with a CAD RNAi gene construct under the control of the maize ubiquitin promoter. The transgenic lines showed reduced CAD expression levels, reduced enzyme activities, reduced lignin content, and altered lignin composition. The modification of lignin biosynthesis resulted in improved sugar release and forage digestibility. Significant increases of saccharification efficiency were obtained in most of the transgenic lines with or without acid pretreatment. A negative correlation between lignin content and sugar release was found among these transgenic switchgrass lines. The transgenic materials have the potential to allow for improved efficiency of cellulosic ethanol production.     

A Genomics Approach to Deciphering Lignin Biosynthesis in Switchgrass

It is necessary to overcome recalcitrance of the biomass to saccharification (sugar release) to make switchgrass (Panicum virgatum) economically viable as a feedstock for liquid biofuels. Lignin content correlates negatively with sugar release efficiency in switchgrass, but selecting the right gene candidates for engineering lignin biosynthesis in this tetraploid outcrossing species is not straightforward. To assist this endeavor, we have used an inducible switchgrass cell suspension system for studying lignin biosynthesis in response to exogenous brassinolide. By applying a combination of protein sequence phylogeny with whole-genome microarray analyses of induced cell cultures and developing stem internode sections, we have generated a list of candidate monolignol biosynthetic genes for switchgrass. Several genes that were strongly supported through our bioinformatics analysis as involved in lignin biosynthesis were confirmed by gene silencing studies, in which lignin levels were reduced as a result of targeting a single gene. However, candidate genes encoding enzymes involved in the early steps of the currently accepted monolignol biosynthesis pathway in dicots may have functionally redundant paralogues in switchgrass and therefore require further evaluation. This work provides a blueprint and resources for the systematic genome-wide study of the monolignol pathway in switchgrass, as well as other C4 monocot species.     

Time Course Field Analysis of COMT-Downregulated Switchgrass: Lignification,Recalcitrance, and Rust Susceptibility

Modifying plant cell walls by manipulating lignin biosynthesis can improve biofuel yields from lignocellulosic crops. For example, transgenic switchgrass lines with downregulated expression of caffeic acid O-methyltransferase, a lignin biosynthetic enzyme, produce up to 38 % more ethanol than controls. The aim of the present study was to understand cell wall lignification over the second and third growing seasons of COMT-downregulated field-grown switchgrass. COMT gene expression, lignification, and cell wall recalcitrance were assayed for two independent transgenic lines at monthly intervals. Switchgrass rust (Puccinia emaculata) incidence was also tracked across the seasons. Trends in lignification over time differed between the 2 years. In 2012, sampling was initiated in mid-growing season on reproductive-stage plants and there was little variation in the lignin content of all lines (COMT-downregulated and control) over time. COMT-downregulated lines maintained 11–16 % less lignin, 33–40 % lower S/G (syringyl-to-guaiacyl) ratios, and 15–42 % higher sugar release relative to controls for all time points. In 2013, sampling was initiated earlier in the season on elongation-stage plants and the lignin content of all lines steadily increased over time, while sugar release expectedly decreased. S/G ratios increased in non-transgenic control plants as biomass accumulated over the season, while remaining relatively stable across the season in the COMT-downregulated lines. Differences in cell wall chemistry between transgenic and non-transgenic lines were not apparent until plants transitioned to reproductive growth in mid-season, after which the cell walls of COMT-downregulated plants exhibited phenotypes consistent with what was observed in 2012. There were no differences in rust damage between transgenics and controls at any time point. These results provide relevant fundamental insights into the process of lignification in a maturing field-grown biofuel feedstock with downregulated lignin biosynthesis.     

Small‐scale and automatable high‐throughput compositional analysis of biomass

Conventional wet chemistry methods to determine biomass composition are labor‐ and time‐intensive and require larger amounts of biomass (300 mg) than is often available. To overcome these limitations and to support a high‐throughput pretreatment and hydrolysis (HTPH) screening system, this article reports on the development of a downscaled biomass compositional analysis that is based on conventional wet chemistry techniques but is scaled down by a factor of 100 to use significantly less material. The procedure is performed in readily available high‐performance liquid chromatography vials and can be automated to reduce operator input and increase throughput. Comparison of the compositional analyses of three biomasses determined by the downscaled approach to those obtained by conventional methods showed that the downscaled method measured statistically identical carbohydrate compositions as standard procedures and also can provide reasonable estimates of lignin and ash contents. These results demonstrate the validity of the downscaled procedure for measuring biomass composition to enable the calculation of sugar yields and determination of trends in sugar release behavior in HTPH screening studies. Biotechnol. Bioeng. 2011;108: 306–312. © 2010 Wiley Periodicals, Inc.     

Expression of ZmGA20ox cDNA alters plant morphology and increases biomass production of switchgrass (Panicum virgatum L.)

Switchgrass (Panicum virgatum L.) is considered a model herbaceous energy crop for the USA, for its adaptation to marginal land, low rainfall and nutrient‐deficient soils; however, its low biomass yield is one of several constraints, and this might be rectified by modulating plant growth regulator levels. In this study, we have determined whether the expression of the Zea mays gibberellin 20‐oxidase (ZmGA20ox) cDNA in switchgrass will improve biomass production. The ZmGA20ox gene was placed under the control of constitutive CaMV35S promoter with a strong TMV omega enhancer, and introduced into switchgrass via Agrobacterium‐mediated transformation. The transgene integration and expression levels of ZmGA20ox in T0 plants were analysed using Southern blot and qRT‐PCR. Under glasshouse conditions, selected transgenic plants exhibited longer leaves, internodes and tillers, which resulted in twofold increased biomass. These phenotypic alterations correlated with the levels of transgene expression and the particular gibberellin content. Expression of ZmGA20ox also affected the expression of genes coding for key enzymes in lignin biosynthesis. Our results suggest that the employment of ectopic ZmGA20ox and selection for natural variants with high level expression of endogenous GA20ox are appropriate approaches to increase biomass production of switchgrass and other monocot biofuel crops.     

Local adaptation of switchgrass drives trait relations to yield and differential responses to climate and soil environments

Switchgrass, a potential biofuel crop, is a genetically diverse species with phenotypic plasticity enabling it to grow in a range of environments. Two primary divergent ecotypes, uplands and lowlands, exhibit trait combinations representative of acquisitive and conservative growth allocation strategies, respectively. Whether these ecotypes respond differently to various types of environmental drivers remains unclear but is crucial to understanding how switchgrass varieties will respond to climate change. We grew two upland, two lowland, and two intermediate/hybrid cultivars of switchgrass at three sites along a latitudinal gradient in the central United States. Over a 4-year period, we measured plant functional traits and biomass yields and evaluated genotype-by-environment (G × E) interaction effects by analyzing switchgrass responses to soil and climate variables. We found substantial evidence of G × E interactions on biomass yield, primarily due to deviations in the response of the southern lowland cultivar Alamo, which produced more biomass in hotter and drier environments relative to other cultivars. While lowland cultivars had the highest potential for yield, their yields were more variable year-to-year compared to other cultivars, suggesting greater sensitivity to environmental perturbations. Models comparing soil and climate principal components as explanatory variables revealed soil properties, especially nutrients, to be most effective at predicting switchgrass biomass yield. Also, positive correlations between biomass yield and conservative plant traits, such as high stem mass and tiller height,  became stronger at lower latitudes where the climate is hotter and drier, regardless of ecotype. Lowland cultivars, however, showed a greater predisposition to exhibit these conservative traits. These results suggest switchgrass trait allocation trade-offs that prioritize aboveground biomass production are more tightly associated in hot, dry environments and that lowland cultivars may exhibit a more specialized strategy relative to other cultivars. Altogether, this research provides essential knowledge for improving the viability of switchgrass as a biofuel crop.     

Root System Dynamics of Miscanthus × giganteus and Panicum virgatum in Response to Rainfed and Irrigated Conditions in California

Miscanthus (Miscanthus × giganteus) and switchgrass (Panicum virgatum) are large perennial grass bioenergy crops in the USA and Europe. Despite much research into their agronomic potential, few studies have examined in situ root growth dynamics under irrigation and soil water deficits, particularly as they relate to shoot performance. We grew miscanthus and switchgrass in outdoor mesocosms under irrigated and rainfed conditions and assessed the spatial distribution and abundance of roots using minirhizotron images and whole root system sampling. Despite surviving an extended period of drought, shoot and root biomass, root length density, numbers of culms, and culm height were reduced in both species under rainfed (dry) conditions. However, rainfed switchgrass far outperformed rainfed miscanthus in all shoot and root growth metrics. The rainfed (drought) treatment reduced switchgrass and miscanthus whole plant biomass by 83 and 98 %, culm production by 67 and 90 %, and root length density by 67 and 94 % compared to irrigated plants, respectively. Root nitrogen concentration was higher for miscanthus (3-fold) and switchgrass (4-fold) in the rainfed treatment compared to irrigated plants and did not significantly differ between species. Unlike miscanthus, switchgrass grew roots continuously into regions of available soil moisture as surface soil layers grew increasingly dry, indicating a drought avoidance strategy. Our study suggests that switchgrass is more likely to tolerate drought by mining deep wet soils, while miscanthus relies on shallow rhizome production to tolerate dry soils.     

Accumulation of Biomass and Compositional Change Over the Growth Season for Six Photoperiod Sorghum Lines

Biomass sorghums [Sorghum bicolor (L.) Moench] are short-day photoperiod sensitive (PS) types, meaning that the crop will grow vegetatively late into the fall season in subtropical and temperate environments. This feature results in high biomass yield potential and mitigates drought susceptibility. The objective of this study is to assess biomass growth patterns and associated changes in composition over a growing season for PS sorghum. The experiment had a split-plot design with two replications, six PS sorghum genotypes, and 13 harvest dates. Harvest started at 60 days after planting (DAP) and continued every 15 days thereafter in both College Station (CS) and Corpus Christi (CC) in Texas, 2010. At each harvest, dry biomass yield, plant height and biomass composition (percent lignin and cellulose) were measured. For all genotypes, biomass accumulation followed a standard growth pattern which included an early lag phase, followed by a log phase of growth and finally, a general reduction in the rate of accumulation. The early lag phase ended at approximately 70 DAP, the log phase of growth ended at approximately 125 DAP, and biomass yields maximized between 180 and 225 DAP. The highest yielding genotype produced 24 Mg ha^?1. Plant heights up to 400 cm were also measured between 180 and 225 DAP. Plant height and biomass yield patterns were similar, indicating that height is important to increase yield. Lignin and cellulose concentrations increased with time; at the highest yields (between 180 and 225 DAP), maximum lignin content were 14.5 to 15.5 % and maximum cellulose content was 31 to 32 %. As with yield potential, significant differences were detected for composition as well. The growth curves indicate that PS biomass sorghum yields sufficiently and can be harvested as early as 130 DAP with maximum sorghum biomass accumulation occurring between 180 and 225 days. Thus, with careful selection and deployment of biomass sorghum hybrids, the harvest season of biomass sorghum can be extended over a 3-month period in southern regions of the US     

Impact of Harvest Time and Switchgrass Cultivar on Sugar Release Through Enzymatic Hydrolysis

Switchgrass (Panicum virgatum L.) is a native North American prairie grass being developed for bioenergy production in the central and eastern USA. The objective of this study was to identify the impacts of harvest time and switchgrass cultivar had on sugar release variables determined through enzymatic hydrolysis. Previously, we reported that delaying harvest of switchgrass until after frost and until after winter resulted in decreased yields of switchgrass but it reduced the amount of ash and nutrients in the biomass. The current study used near-infrared reflectance spectroscopy (NIRS) to broaden an existing set of calibration equations designed to predict composition and sugar release variables of switchgrass. These updated calibrations were then applied to the full set of samples from a multi-year and multi-location switchgrass harvest-management study. Composition and processor sugar yields were significantly affected by location, year, cultivar, and harvest time, of which the time of harvest was the most important. Delaying the time of harvest until after frost or post-winter increased the concentration of structural carbohydrates from 500 to over 570 g kg^?1 in the biomass and lignin content from 160 to over 200 g kg^?1. Conversely, delaying harvest time lowered the amounts of ash and soluble sugars. The later harvest times also yielded more sugars following processing with yields increasing over 20% from the first harvest. Increased sugar yields are attributable to both increased concentration of sugars in the biomass upon harvest and reduced biomass recalcitrance. Based upon processed sugar yields, it is estimated that a biorefinery producing 76 million liters of ethanol per year would require 229–373 km² of land cultivated with switchgrass.     

Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production

? The lignin content of feedstock has been proposed as one key agronomic trait impacting biofuel production from lignocellulosic biomass. 4-Coumarate:coenzyme A ligase (4CL) is one of the key enzymes involved in the monolignol biosynthethic pathway. ? Two homologous 4CL genes, Pv4CL1 and Pv4CL2, were identified in switchgrass (Panicum virgatum) through phylogenetic analysis. Gene expression patterns and enzymatic activity assays suggested that Pv4CL1 is involved in monolignol biosynthesis. Stable transgenic plants were obtained with Pv4CL1 down-regulated. ? RNA interference of Pv4CL1 reduced extractable 4CL activity by 80%, leading to a reduction in lignin content with decreased guaiacyl unit composition. Altered lignification patterns in the stems of RNAi transgenic plants were observed with phloroglucinol-HCl staining. The transgenic plants also had uncompromised biomass yields. After dilute acid pretreatment, the low lignin transgenic biomass had significantly increased cellulose hydrolysis (saccharification) efficiency. ? The results demonstrate that Pv4CL1, but not Pv4CL2, is the key 4CL isozyme involved in lignin biosynthesis, and reducing lignin content in switchgrass biomass by silencing Pv4CL1 can remarkably increase the efficiency of fermentable sugar release for biofuel production.     

Herbicides for Establishing Switchgrass in the Central and Northern Great Plains

Weed interference limits switchgrass (Panicum virgatum L.) establishment from seed. Our objectives were to determine the effect of selected post-plant, preemergence herbicides on stand establishment and subsequent biomass yields of adapted upland switchgrass cultivars grown in three environments in the Central and Northern Great Plains. A separate experiment was conducted in eastern Nebraska to determine if there were any differences among switchgrass ecotypes for herbicide tolerance to the optimal herbicide combination. Herbicides applied immediately after planting were different concentrations of atrazine [Aatrex 4L®; 6-chloro-N-ethyl-N′-(1-methylethyl)-1,3,5-triazine-2,4-diamine], quinclorac (Paramount®; 3,7-Dichloro-8-quinolinecarboxylic acid), atrazine+quinclorac, imazapic {Plateau®; 2-[4,5-dihydro-4-methyl-4-(1-methylethyl)-5-oxo-1H-imidazol-2-yl]-5-methyl-3-pyridinecarboxylic acid}, and quinclorac+imazapic. Herbicide efficacy was determined by measuring stand frequency of occurrence and biomass yield the year after establishment. The application of quinclorac plus atrazine resulted in acceptable stands and high biomass yields. Imazapic often reduced switchgrass stands in comparison to the nontreated control and is not recommended for switchgrass establishment. In the multi-state trials, the herbicide by cultivar interaction was not significant for stands or biomass yields, indicating that the effects of herbicides on switchgrass stands and biomass yields were consistent over the upland cultivars used in the trials. No differences were detected among switchgrass lowland and upland ecotypes for tolerance to atrazine and quinclorac. Quinclorac, which provides effective control of grassy weeds, and herbicides such as atrazine which provide good broadleaf weed control are an excellent herbicide combination for establishing switchgrass for biomass production in the Great Plains and the Midwest.     

Eastern gamagrass as an alternative cellulosic feedstock for bioethanol production

Eastern gamagrass (Trypsacum dactyloides) is a C₄ perennial grass, native to the USA with desirable characteristics that warrants further investigation as a new lignocellulosic crop for bioethanol production. Chemical composition assays showed that eastern gamagrass had comparable cellulose, hemicellulose and lignin compositions to those of switchgrass (Panicum virgatum). With the cellulose solvent-based lignocellulose fractionation (CSLF) pretreatment and subsequent enzymatic saccharification, 80.5–99.8% of cellulosic glucose was released from the gamagrass biomass, which was 10–17% greater than the glucose release efficiency from switchgrass (73.5–87.1%). Furthermore, the hydrolysate of gamagrass supported greater ethanol fermentation yield (up to 0.496 g/g glucose) than the hydrolysates of switchgrass. As such, in the whole process of biomass-to-ethanol conversion, gamagrass could yield 13–35% more ethanol per gram of biomass than switchgrass, indicating that gamagrass has high potential as an alternative energy feedstock for lignocellulosic ethanol production.