Bioarchaeological research in Croatia--a historical review

The study of human skeletal remains from archaeological sites gives us the opportunity to answer important questions about the lifestyle of past populations. The discipline that studies human skeletal remains is known as bioarchaeology. This paper provides a historical review of bioarchaeological research in Croatia. It is based on the available published material that analyzes human skeletal remains from archaeological sites located on the Croatian territory covering time span from the Neolithic period to the late Middle Ages.     

全球健康史项目亚洲模块——亚洲古代人群健康、疾病和生活方式的大数据

“全球健康史项目”探导新石器时期以来人类的疾病史,以前所未有的大数据研究方式回顾近代人类的历史,来衡量人类的生活质量和人类在充满挑战的生活条件下的适应能力。我们于2018年5月启动了全球健康史项目亚洲模块,将这个起源于美洲和欧洲的宏伟的项目扩展到亚洲。在全球健康史项目中纳入亚洲数据,不仅可以从进化的角度丰富近代人类演化历史上的第一手骨骼和口腔健康状况,还可以为健康政策制定的视野提供历史性的深度。     

The Ice Man's diet as reflected by the stable nitrogen and carbon isotopic composition of his hair.

Establishing the diets of ancient human populations is an integral component of most archaeological studies. Stable isotope analysis of well-preserved bone collagen is the most direct approach for a general assessment of paleodiet. However, this method has been limited by the scarcity of well-preserved skeletal materials for this type of destructive analysis. Hair is preserved in many burials, but is often overlooked as an alternative material for isotopic analysis. Here we report that the stable carbon and nitrogen isotope values for the hair of the 5200 year-old Ice Man indicates a primarily vegetarian diet, in agreement with his dental wear pattern. Whereas previous investigations have focused on bone collagen, the stable isotope composition of hair may prove to be a more reliable proxy for paleodiet reconstruction, particularly when skeletal remains are not well preserved and additional archaeological artifacts are unavailable.     

Tracing patterns of activity in the human skeleton: An overview of methods, problems, and limits of interpretation

Studies of patterns of activity in human skeletal remains have grown in number over the last few years. Different methods have been used to reconstruct activity patterns in past populations. In this review of the available literature the common themes of these studies have been isolated in order to show that many studies do not truly conform to the standards of the field. Inadequate sample size, too far-reaching conclusions and neglect of other possible explanations are among the problems easily recognised in the literature. Many assumptions are lacking a sound experimental basis, and it becomes increasingly evident that there are many more problems and limits of interpretations than have been usually acknowledged in the recent past. It also appears that many results, which have been interpreted in terms of sexual division of labour may, in fact, be expressions of the intrinsic sexual dimorphism of Homo sapiens and not culture- or population-specific peculiarities. Acknowledging the results of many studies from the field of sports medicine it appears doubtful that adult patterns of activity can truly be isolated from those which stem from the formative years of the human skeleton during the subadult growth period. A more cautious approach to the interpretation of data and a return to more basic research are needed to adequately address all the possibly confounding issues when trying to reconstruct patterns of activity from archaeological skeletal remains.     

Early Austronesians: Into and Out Of Taiwan

A Taiwan origin for the expansion of the Austronesian languages and their speakers is well supported by linguistic and archaeological evidence. However, human genetic evidence is more controversial. Until now, there had been no ancient skeletal evidence of a potential Austronesian-speaking ancestor prior to the Taiwan Neolithic ∼6,000 years ago, and genetic studies have largely ignored the role of genetic diversity within Taiwan as well as the origins of Formosans. We address these issues via analysis of a complete mitochondrial DNA genome sequence of an ∼8,000-year-old skeleton from Liang Island (located between China and Taiwan) and 550 mtDNA genome sequences from 8 aboriginal (highland) Formosan and 4 other Taiwanese groups. We show that the Liangdao Man mtDNA sequence is closest to Formosans, provides a link to southern China, and has the most ancestral haplogroup E sequence found among extant Austronesian speakers. Bayesian phylogenetic analysis allows us to reconstruct a history of early Austronesians arriving in Taiwan in the north ∼6,000 years ago, spreading rapidly to the south, and leaving Taiwan ∼4,000 years ago to spread throughout Island Southeast Asia, Madagascar, and Oceania.     

Late Pleistocene human evolution in Sicily: comparative morphometric analysis of Grotta di San Teodoro craniofacial remains

The paleoanthropological remains from Grotta di San Teodoro near Acquedolci (province of Messina, Italy) represent the oldest and largest skeletal collection yet found documenting human settlement of Sicily. The sample, attributed to the Late Epigravettian (between 14,000 and 10,000 years B.P.), consists of seven variously complete adult individuals (San Teodoro 1–7). We compare the cranial sample to an array of both prehistoric and recent samples using multivariate techniques including D² distance analysis, canonical variate analysis, cluster analysis, and multidimensional scaling. Overall, the San Teodoro cranial sample displays a morphometric pattern close to Western European groups of similar antiquity, in particular those from Central and Southern Italy. The morphometric affinities indicate that these people probably came from peninsular Italy by sea during the Late Epigravettian epoch. An alternative hypothesis is that they descended from immigrants that arrived by land during a low sea level episode corresponding to the maximum Würmian regression, about 18,000 years B.P, with gene flow accounting for the morphological homogeneity with the populations of peninsular Italy. The San Teodoro skeletal sample provides the first reliable evidence for human settlement of Sicily.     

Archaeophytes in Britain

The concept of 'archaeophytes' (alien taxa which became established in a study area before AD  1500) is widely used in floristic analyses in central and northern Europe, but few authors have applied it to the British flora. Six criteria for the recognition of archaeophytes are outlined, drawing upon evidence of fossil and recent history, current habitat and European and extra-European distribution. These are used to identify 157 probable archaeophytes in Britain. Only five of these are known from fossil records from the Neolithic; most are first recorded in archaeological contexts in the Late Bronze Age, Iron Age, Roman or Medieval periods. As a group, archaeophytes (unlike neophytes) have declined in Britain in the 20th century. Comparison of the accepted status of these species in the Czech Republic, Germany, Poland and Finland demonstrates that over 50% are treated as archaeophytes in central Europe, but in Finland many are absent or only present as casual introductions. Species regarded as archaeophytes in these countries but as natives in Britain are also reviewed. The indirect nature of the evidence used to identify archaeophytes means that it is usually impossible to be certain about the history of a species; in particular, archaeophytes which have successfully invaded semi-natural habitats are likely to be overlooked as natives. The suggestion that a species is an archaeophyte is best regarded as a hypothesis to be tested by further studies. There is considerable scope for archaeological investigations aimed at addressing these botanical problems.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 145 , 257−294.     

Mechanical determinants of bone form: insights from skeletal remains

Analysis of skeletal remains from humans living in the past forms an important complement to observational and experimental studies of living humans and animal models. Including earlier humans in such analyses increases the range of variation in both behavior and body size and shape that are represented, and can provide insights into the adaptive potential of the modern human skeleton. I review here a variety of studies of archaeological and paleontological remains that have investigated differences in skeletal structure from a mechanical perspective, focusing in particular on diaphyseal strength of the limb bones. Several conclusions can be drawn from these studies: 1) there has been a decline in overall skeletal strength relative to body size over the course of human evolution that has become progressively steeper in recent millennia, probably due to increased sedentism and technological advancement; 2) differences in pelvic structure and hip mechanical loadings affect femoral shape; 3) activity patterns affect overall strength and shape of both the lower and upper limb bones; and 4) responsiveness to changes in mechanical loading varies between skeletal features (e.g., articulations versus diaphyses) and by age.     

Archaeology,demography and life history theory together can help us explain past and present population patterns

Population matters. Demographic patterns are both a cause and a consequence of human behaviour in other important domains, such as subsistence, cooperation, politics and culture. Demographers interested in contemporary and recent historical populations have rich data at their fingertips; the importance of demography means many interested parties have gathered demographic data, much of which is now readily available for all to explore. Those interested in the demography of the distant past are not so fortunate, given the lack of written records. Nevertheless, the emergence in recent years of a new interest in the demography of ancient populations has seen the development of a range of new methods for piecing together archaeological, skeletal and DNA evidence to reconstruct past population patterns. These efforts have found evidence in support of the view that the relatively low long-term population growth rates of prehistoric human populations, albeit ultimately conditioned by carrying capacities, may have been owing to ‘boom–bust’ cycles at the regional level; rapid population growth, followed by population decline. In fact, this archaeological research may have come to the same conclusion as some contemporary demographers: that demography can be remarkably hard to predict, at least in the short term. It also fits with evidence from biology that primates, and particularly humans, may be adapted to environmental variability, leading to associated demographic stochasticity. This evidence of the fluctuating nature of human demographic patterns may be of considerable significance in understanding our species'' evolution, and of understanding what our species future demographic trajectories might be.This article is part of the theme issue ‘Cross-disciplinary approaches to prehistoric demography’.     

Effects of reactive oxygen species and interplay of antioxidants during physical exercise in skeletal muscles

A large number of researches have led to a substantial growth of knowledge about exercise and oxidative stress. Initial investigations reported that physical exercise generates free radical-mediated damages to cells; however, in recent years, studies have shown that regular exercise can upregulate endogenous antioxidants and reduce oxidative damage. Yet, strenuous exercise perturbs the antioxidant system by increasing the reactive oxygen species (ROS) content. These alterations in the cellular environment seem to occur in an exercise type-dependent manner. The source of ROS generation during exercise is debatable, but now it is well established that both contracting and relaxing skeletal muscles generate reactive oxygen species and reactive nitrogen species. In particular, exercises of higher intensity and longer duration can cause oxidative damage to lipids, proteins, and nucleotides in myocytes. In this review, we summarize the ROS effects and interplay of antioxidants in skeletal muscle during physical exercise. Additionally, we discuss how ROS-mediated signaling influences physical exercise in antioxidant system.     

Ancient DNA applications for wildlife conservation

Ancient DNA analyses of historical, archaeological and paleontological remains can contribute important information for the conservation of populations and species that cannot be obtained any other way. In addition to ancient DNA analyses involving a single or few individuals, population level studies are now possible. Biases inherent in estimating population parameters and history from modern genetic diversity are exaggerated when populations are small or have been heavily impacted by recent events, as is common for many endangered species. Going directly back in time to study past populations removes many of the assumptions that undermine conclusions based only on recent populations. Accurate characterization of historic population size, levels of gene flow and relationships with other populations are fundamental to developing appropriate conservation and management plans. The incorporation of ancient DNA into conservation genetics holds a lot of potential, if it is employed responsibly.     

Continuity and change in the eastern Aleutian archaeological sequence

The eastern Aleutian prehistoric archaeological sequence is key for understanding population movements, cultural exchanges, and adaptations to environmental changes over a wide area of the north Pacific and Bering Sea during the Holocene. An important question is, Can the settlement history of the eastern Aleutians be understood as a single continuous tradition lasting some 9,000 years, or were there major population and cultural influxes along with periods of widespread population abandonment? We review the available archaeological evidence with reference to recent mtDNA and nucleic DNA studies of prehistoric and contemporary Arctic and Subarctic populations and conclude that the evidence points to an overall cultural continuity with notable incursions and excursions of people and cultural elements into and out of the eastern Aleutians.     

Skeletal biological distance studies in American physical anthropology: recent trends

Biological distance analysis, the dominant type of skeletal biological research during the 19th century, has become less visible in recent years. Although the proportion of American Journal of Physical Anthropology articles and published abstracts focusing on biodistance has remained fairly constant over the three decades between 1955 and 1985, the proportion of biodistance contributions relative to other skeletal biology studies has decreased. Emphasis in skeletal biology has shifted from the analysis of biological variation to investigations of health and diet, and within biodistance studies methodological issues have assumed prominence over purely analytical approaches. This paper investigates trends in biological distance analysis through a survey of articles and meetings abstracts published in the American Journal of Physical Anthropology from 1955 to 1985. The survey provides the historical context for five symposium papers on skeletal biological distance presented at the 1986 meeting of the American Association of Physical Anthropologists.     

Interpretation of the fossil record of Acanthaster planci from the Great Barrier Reef: a reply to criticism

The nature and interpretation of the fossil record of Acanthaster planci from the GBR is reviewed in the light of comments from Keesing et al. (1992) and Pandolfi (1992). Skeletal remains of A. planci in reef-top sediment of many reefs has been derived from very large numbers of individuals, indicating substantial, long-term mortality at reef-top locations. The fossil record provides useful perspective on mortality patterns in the absence of substantive ecological data. The incidence of skeletal elements on reefs where they are abundant cannot be adequately accounted for by the mortality of non-outbreak populations as estimated by recent surveys. Analysis of all available data reaffirms a relationship between the incidence of skeletal elements in surface sediment and observed outbreak history. There is no presently identified taphonomic mechanism by which the accumulation of A. planci skeletal elements released on death might be systematically biased relative to other skeletal components of reefal sediment. Because of skeletal degradation, physical transport and extensive bioturbation that applies in shallow-water reefal sediment, reconstructive taphonomic analysis of A. planci skeletal remains is not achievable. Core sediment, on which interpretation of the longterm fossil record of A. planci is based, is homogeneous, unstratified, and has experienced substantial time averaging due to pervasive bioturbation. Extensive bulk sediment dating has shown that the cores have retained a general age structure but fine-scale stratigraphic detail, required for the recognition of outbreak events from the fossil record available in reefal sediment is unlikely. As required by the principle of simplicity, the proposition that abundant A. planci skeletal elements found in sediment from Green Island, John Brewer and other reefs of the GBR represent the time-averaged product of outbreaking populations should be adopted as the favoured working hypothesis. Other alternative explantions have been advanced but all require patterns or processes that have yet to be substantiated.     

Historical overview of archaeological research in the Aleut region of Alaska

The Aleut region has the longest history of anthropological and archaeological investigations in all of Alaska. Although predating formal anthropological studies, the extensive ethnographic account by the Russian Orthodox priest Ivan Veniaminov in the early 1800s laid a solid foundation for scientific archaeological and anthropological investigations over the next 100 years, including those by William Healy Dall in the 1870s, Waldemar Jochelson from 1909 to 1910, and Ale? Hrdli?ka in the 1930s. Following World War II, research continued, and the evolving political picture in Alaska gave Aleut people increasing influence and control over such efforts.     

A geographically explicit genetic model of worldwide human-settlement history

Currently available genetic and archaeological evidence is generally interpreted as supportive of a recent single origin of modern humans in East Africa. However, this is where the near consensus on human settlement history ends, and considerable uncertainty clouds any more detailed aspect of human colonization history. Here, we present a dynamic genetic model of human settlement history coupled with explicit geographical distances from East Africa, the likely origin of modern humans. We search for the best-supported parameter space by fitting our analytical prediction to genetic data that are based on 52 human populations analyzed at 783 autosomal microsatellite markers. This framework allows us to jointly estimate the key parameters of the expansion of modern humans. Our best estimates suggest an initial expansion of modern humans approximately 56,000 years ago from a small founding population of approximately 1,000 effective individuals. Our model further points to high growth rates in newly colonized habitats. The general fit of the model with the data is excellent. This suggests that coupling analytical genetic models with explicit demography and geography provides a powerful tool for making inferences on human-settlement history.     

Population bottlenecks and Pleistocene human evolution

We review the anatomical and archaeological evidence for anearly population bottleneck in humans and bracket the time whenit could have occurred. We outline the subsequent demographicchanges that the archaeological evidence of range expansionsand contractions address, and we examine how inbreeding effectivepopulation size provides an alternative view of past populationsize change. This addresses the question of other, more recent,population size bottlenecks, and we review nonrecombining andrecombining genetic systems that may reflect them. We examinehow these genetic data constrain the possibility of significantpopulation size bottlenecks (i.e., of sufficiently small sizeand/or long duration to minimize genetic variation in autosomaland haploid systems) at several different critical times inhuman history. Different constraints appear in nonrecombiningand recombining systems, and among the autosomal loci most areincompatible with any Pleistocene population size expansions.Microsatellite data seem to show Pleistocene population sizeexpansions, but in aggregate they are difficult to interpretbecause different microsatellite studies do not show the sameexpansion. The archaeological data are only compatible witha few of these analyses, most prominently with data from Aluelements, and we use these facts to question whether the viewof the past from analysis of inbreeding effective populationsize is valid. Finally, we examine the issue of whether inbreedingeffective population size provides any reasonable measure ofthe actual past size of the human species. We contend that ifthe evidence of a population size bottleneck early in the evolutionof our lineage is accepted, most genetic data either lack theresolution to address subsequent changes in the human populationor do not meet the assumptions required to do so validly. Itis our conclusion that, at the moment, genetic data cannot disprovea simple model of exponential population growth following abottleneck 2 MYA at the origin of our lineage and extendingthrough the Pleistocene. Archaeological and paleontologicaldata indicate that this model is too oversimplified to be anaccurate reflection of detailed population history, and thereforewe find that genetic data lack the resolution to validly reflectmany details of Pleistocene human population change. However,there is one detail that these data are sufficient to address.Both genetic and anthropological data are incompatible withthe hypothesis of a recent population size bottleneck. Suchan event would be expected to leave a significant mark acrossnumerous genetic loci and observable anatomical traits, butwhile some subsets of data are compatible with a recent populationsize bottleneck, there is no consistently expressed effect thatcan be found across the range where it should appear, and thisabsence disproves the hypothesis.     

A reconsideration of “Races” and their impact on the origins of the Chalcolithic in the Levant using available anthropological and archaeological data

Populations of the Chalcolithic Levant as defined by archaeological excavations has in many cases reinforced the traditional scheme that a number of “races” are present. This scheme is usually based not only on differential cultural traditions as identified by archeologists, but also on the available skeletal evidence as discussed by physical anthropologists. Recently this view has been challenged and it has been suggested that the metrical and anatomical range of variability as identified within Chalcolithic populations can be subsumed into a single population or “racial” range. This paper examines both the available biological and archaeological evidence from the Chalcolithic Levant and concludes that there is no strong archaeological or biological evidence to support a multiple “racial” origin for the Chalcolithic of the Levant.     

海岱地区大汶口文化时期人口死亡年龄的统计分布特征

人口死亡年龄是揭示一个族群健康状况和社会经济条件的重要指标。本文根据海岱地区大汶口文化时期九个墓地人骨遗存的发掘报告,运用定量统计的方法检验了人口死亡年龄分布特征。发现该区大汶口文化时期人口的死亡年龄分布近似服从正态分布。最后探讨了造成人口低死亡年龄的可能原因,并给出了这一概率分布的数学意义以及在史前人口学中的应用前景。     

Detection of Mycobacterium leprae DNA from Archaeological Skeletal Remains in Japan Using Whole Genome Amplification and Polymerase Chain Reaction

Background

Identification of pathogen DNA from archaeological human remains is a powerful tool in demonstrating that the infectious disease existed in the past. However, it is very difficult to detect trace amounts of DNA remnants attached to the human skeleton, especially from those buried in a humid atmosphere with a relatively high environmental temperature such as in Asia.

Methodology/Principal Findings

Here we demonstrate Mycobacterium leprae DNA from archaeological skeletal remains in Japan by polymerase chain reaction, DNA sequencing and single nucleotide polymorphism (SNP) analysis. In addition, we have established a highly sensitive method of detecting DNA using a combination of whole genome amplification and polymerase chain reaction, or WGA-PCR, which provides superior sensitivity and specificity in detecting DNA from trace amounts of skeletal materials.

Conclusion/Significance

We have detected M. leprae DNA in archaeological skeletal remains for the first time in the Far East. Its SNP genotype corresponded to type 1; the first detected case worldwide of ancient M. leprae DNA. We also developed a highly sensitive method to detect ancient DNA by utilizing whole genome amplification.