Review of prospects for germplasm improvement for waterlogging tolerance in wheat,barley and oats

A review is presented for prospects of germplasm improvement for waterlogging tolerance in wheat, barley and oats using a mechanistic approach based on adaptive physiological traits. In `The waterlogged environments for crop production' section, the extent of waterlogging is reviewed commencing with determination of environmental factors which may limit plant growth and development in waterlogging prone regions. This highlights that different types of waterlogging may exist, there may be large spatial and temporal variation in waterlogging, and that waterlogging may be confounded in field experiments with additional environmental factors. Environmental characterisation is therefore a key step to using mechanistic approaches for germplasm improvement for target environments, for extrapolation to other environments, and for development of screening protocols under controlled conditions that accurately reflect the field environment. In the `Information on key components required for germplasm improvement' section, the genetic diversity in wheat, barley and oats for waterlogging tolerance is confirmed. Physiological mechanisms for waterlogging tolerance are diverse and can be grouped into adaptive traits relating to (1) phenology, (2) morphology and anatomy, (3) nutrition, (4) metabolism including anaerobic catabolism and anoxia tolerance, and (5) post anoxic damage and recovery. For wheat and barley, there is some genetic diversity for waterlogging tolerance at the germination stage, however the full potential seems yet to be exploited. Varietal differences in tolerance at the germination stage often differ from tolerance at later stages of development, and this supports the view that different mechanisms of tolerance exist at the whole plant and tissue level. Limited work from genetic studies indicates a high heritability for waterlogging tolerance. It is concluded that the best opportunities for germplasm improvement are for further exploration and utilisation of genetic diversity by improving selection criteria including the use of marker assisted selection. Additional opportunities are described for increasing genetic diversity using wide hybridisations and development of transgenic plants.     

Review of wheat improvement for waterlogging tolerance in Australia and India: the importance of anaerobiosis and element toxicities associated with different soils

Background and Aims

The lack of knowledge about key traits in field environments is a major constraint to germplasm improvement and crop management because waterlogging-prone environments are highly diverse and complex, and the mechanisms of tolerance to waterlogging include a large range of traits. A model is proposed that waterlogging tolerance is a product of tolerance to anaerobiosis and high microelement concentrations. This is further evaluated with the aim of prioritizing traits required for waterlogging tolerance of wheat in the field.

Methods

Waterlogging tolerance mechanisms of wheat are evaluated in a range of diverse environments through a review of past research in Australia and India; this includes selected soils and plant data, including plant growth under waterlogged and drained conditions in different environments. Measurements focus on changes in redox potential and concentrations of diverse elements in soils and plants during waterlogging.

Key Results

(a) Waterlogging tolerance of wheat in one location often does not relate to another, and (b) element toxicities are often a major constraint in waterlogged environments. Important element toxicities in different soils during waterlogging include Mn, Fe, Na, Al and B. This is the first time that Al and B toxicities have been indicated for wheat in waterlogged soils in India. These results support and extend the well-known interactions of salinity/Na and waterlogging/hypoxia tolerance.

Conclusions

Diverse element toxicities (or deficiencies) that are exacerbated during waterlogging are proposed as a major reason why waterlogging tolerance at one site is often not replicated at another. Recommendations for germplasm improvement for waterlogging tolerance include use of inductively coupled plasma analyses of soils and plants.Key words: Waterlogging, microelements, toxicity, redox potential, wheat, anaerobiosis

‘No grain is ever produced without water, but too much water tends to spoil the grain and inundation is as injurious to growth as dearth of water.’ Narada Smriti XI, 19; circa 3000 bc.‘Waterlogging’ is defined as a condition of the soil where excess water limits gas diffusion; while ‘waterlogging tolerance’ is defined as survival or the maintenance of high growth rates, biomass accumulation or grain yield under waterlogging relative to non waterlogged (usually drained soil) conditions (Setter and Waters, 2003).

     

Mechanisms of waterlogging tolerance in wheat – a review of root and shoot physiology

We review the detrimental effects of waterlogging on physiology, growth and yield of wheat. We highlight traits contributing to waterlogging tolerance and genetic diversity in wheat. Death of seminal roots and restriction of adventitious root length due to O₂ deficiency result in low root:shoot ratio. Genotypes differ in seminal root anoxia tolerance, but mechanisms remain to be established; ethanol production rates do not explain anoxia tolerance. Root tip survival is short‐term, and thereafter, seminal root re‐growth upon re‐aeration is limited. Genotypes differ in adventitious root numbers and in aerenchyma formation within these roots, resulting in varying waterlogging tolerances. Root extension is restricted by capacity for internal O₂ movement to the apex. Sub‐optimal O₂ restricts root N uptake and translocation to the shoots, with N deficiency causing reduced shoot growth and grain yield. Although photosynthesis declines, sugars typically accumulate in shoots of waterlogged plants. Mn or Fe toxicity might occur in shoots of wheat on strongly acidic soils, but probably not more widely. Future breeding for waterlogging tolerance should focus on root internal aeration and better N‐use efficiency; exploiting the genetic diversity in wheat for these and other traits should enable improvement of waterlogging tolerance.     

Potassium transport and plant salt tolerance

Salinity is a major abiotic stress affecting approximately 7% of the world's total land area resulting in billion dollar losses in crop production around the globe. Recent progress in molecular genetics and plant electrophysiology suggests that the ability of a plant to maintain a high cytosolic K⁺/Na⁺ ratio appears to be critical to plant salt tolerance. So far, the major efforts of plant breeders have been aimed at improving this ratio by minimizing Na⁺ uptake and transport to shoot. In this paper, we discuss an alternative approach, reviewing the molecular and ionic mechanisms contributing to potassium homeostasis in salinized plant tissues and discussing prospects for breeding for salt tolerance by targeting this trait. Major K⁺ transporters and their functional expression under saline conditions are reviewed and the multiple modes of their control are evaluated, including ameliorative effects of compatible solutes, polyamines and supplemental calcium. Subsequently, the genetic aspects of inheritance of K⁺ transport 'markers' are discussed in the general context of salt tolerance as a polygenic trait. The molecular identity of 'salt tolerance' genes is analysed, and prospects for future research and breeding are examined.     

Linking waterlogging tolerance with Mn2+ toxicity: a case study for barley

Vast agricultural areas are affected by flooding, causing up to 80% yield reduction and resulting in multibillion dollar losses. Up to now, the focus of plant breeders was predominantly on detrimental effects of anoxia, while other (potentially equally important) traits were essentially neglected; one of these is soil elemental toxicity. Excess water triggers a progressive decrease in soil redox potential, thus increasing the concentration of Mn²⁺ that can be toxic to plants if above a specific threshold. This work aimed to quantify the relative contribution of Mn²⁺ toxicity to waterlogging stress tolerance, using barley as a case study. Twenty barley (Hordeum vulgare) genotypes contrasting in waterlogging stress tolerance were studied for their ability to cope with toxic (1 mm ) amounts of Mn²⁺ in the root rhizosphere. Under Mn²⁺ toxicity, chlorophyll content of most waterlogging‐tolerant genotypes (TX9425, Yerong, CPI‐71284‐48 and CM72) remained above 60% of the control value, whereas sensitive genotypes (Franklin and Naso Nijo) had 35% less chlorophyll than 35% of controls. Manganese concentration in leaves was not related to visual Mn²⁺ toxicity symptoms, suggesting that various Mn²⁺ tolerance mechanisms might operate in different tolerant genotypes, i.e. avoidance versus tissue tolerance. The overall significant (r = 0.60) correlation between tolerance to Mn²⁺ toxicity and waterlogging in barley suggests that plant breeding for tolerance to waterlogging traits may be advanced by targeting mechanisms conferring tolerance to Mn²⁺ toxicity, at least in this species.     

QTL Mapping of Agronomic Waterlogging Tolerance Using Recombinant Inbred Lines Derived from Tropical Maize (Zea mays L) Germplasm

Waterlogging is an important abiotic stress constraint that causes significant yield losses in maize grown throughout south and south-east Asia due to erratic rainfall patterns. The most economic option to offset the damage caused by waterlogging is to genetically incorporate tolerance in cultivars that are grown widely in the target agro-ecologies. We assessed the genetic variation in a population of recombinant inbred lines (RILs) derived from crossing a waterlogging tolerant line (CAWL-46-3-1) to an elite but sensitive line (CML311-2-1-3) and observed significant range of variation for grain yield (GY) under waterlogging stress along with a number of other secondary traits such as brace roots (BR), chlorophyll content (SPAD), % stem and root lodging (S&RL) among the RILs. Significant positive correlation of GY with BR and SPAD and negative correlation with S&RL indicated the potential use of these secondary traits in selection indices under waterlogged conditions. RILs were genotyped with 331 polymorphic single nucleotide polymorphism (SNP) markers using KASP (Kompetitive Allele Specific PCR) Platform. QTL mapping revealed five QTL on chromosomes 1, 3, 5, 7 and 10, which together explained approximately 30% of phenotypic variance for GY based on evaluation of RIL families under waterlogged conditions, with effects ranging from 520 to 640 kg/ha for individual genomic regions. 13 QTL were identified for various secondary traits associated with waterlogging tolerance, each individually explaining from 3 to 14% of phenotypic variance. Of the 22 candidate genes with known functional domains identified within the physical intervals delimited by the flanking markers of the QTL influencing GY and other secondary traits, six have previously been demonstrated to be associated with anaerobic responses in either maize or other model species. A pair of flanking SNP markers has been identified for each of the QTL and high throughput marker assays were developed to facilitate rapid introgression of waterlogging tolerance in tropical maize breeding programs.     

Flooding tolerance in halophytes

Flooding is a common environmental variable with salinity. Submerged organs can suffer from O₂ deprivation and the resulting energy deficits can compromise ion transport processes essential for salinity tolerance. Tolerance of soil waterlogging in halophytes, as in glycophytes, is often associated with the production of adventitious roots containing aerenchyma, and the resultant internal O₂ supply. For some species, shallow rooting in aerobic upper soil layers appears to be the key to survival on frequently flooded soils, although little is known of the anoxia tolerance in halophytes. Halophytic species that inhabit waterlogged substrates are able to regulate their shoot ion concentrations in spite of the hypoxic (or anoxic) medium in which they are rooted, this being in stark contrast with most other plants which suffer when salinity and waterlogging occur in combination. Very few studies have addressed the consequences of submergence of the shoots by saline water; these have, however, demonstrated tolerance of temporary submergence in some halophytes.     

Physiology and biochemistry of waterlogging tolerance in plants

Waterlogging is a serious problem, which affects crop growth and yield in low lying rainfed areas. The main cause of damage under waterlogging is oxygen deprivation, which affect nutrient and water uptake, so the plants show wilting even when surrounded by excess of water. Lack of oxygen shift the energy metabolism from aerobic mode to anaerobic mode. Plants adapted to waterlogged conditions, have mechanisms to cope with this stress such as aerenchyma formation, increased availability of soluble sugars, greater activity of glycolytic pathway and fermentation enzymes and involvement of antioxidant defence mechanism to cope with the post hypoxia/anoxia oxidative stress. Gaseous plant hormone ethylene plays an important role in modifying plant response to oxygen deficiency. It has been reported to induce genes of enzymes associated with aerenchyma formation, glycolysis and fermentation pathway. Besides, nonsymbiotic-haemoglobins and nitric oxide have also been suggested as an alternative to fermentation for maintaining lower redox potential (low NADH/NAD ratio), and thereby playing an important role in anaerobic stress tolerance and signaling.     

微生物耐受乙醇与丁醇机制及其在生物燃料生产与生物转化中的应用

生物法获取乙醇与丁醇过程中有机溶剂的毒性是生产菌重要环境胁迫因素之一,且当有机溶剂超过一定浓度时便会抑制微生物的生长,甚至引起微生物的死亡,因此提高工业微生物的有机溶剂耐受性对工业生产具有重要的意义。对微生物乙醇及丁醇耐受机制的研究可为选育具有较强溶剂耐受菌提供理论基础。本文系统介绍了微生物耐受乙醇与丁醇的机制,并对其在生物燃料生产及生物转化中面临的机遇与挑战等问题进行简要的评述。     

Changes in gene expression during germination reveal pea genotypes with either “quiescence” or “escape” mechanisms of waterlogging tolerance

Waterlogging causes germination failure in pea (Pisum sativum L.). Three genotypes (BARI Motorshuti‐3, Natore local‐2 [NL‐2], and Kaspa) contrasting in ability to germinate in waterlogged soil were exposed to different durations of waterlogging. Whole genome RNAseq was employed to capture differentially expressing genes. The ability to germinate in waterlogged soil was associated with testa colour and testa membrane integrity as confirmed by electrical conductivity measurements. Genotypes Kaspa and NL‐2 displayed different mechanisms of tolerance. In Kaspa, an energy conserving strategy was indicated by a strong upregulation of tyrosine protein kinsase and down regulation of linoleate 9S‐lipoxygenase 5, a fat metabolism gene. In contrast, a faster energy utilization strategy was suggested in NL‐2 by the marked upregulation of a subtilase family protein and peroxisomal adenine nucleotide carrier 2, a fat metabolizing gene. Waterlogging susceptibility in germinating seeds of genotype BARI Motorshuti‐3 was linked to upregulation of a kunitz‐type trypsin/protease inhibitor that blocks protein metabolism and may lead to excessive lipid metabolism and the membrane leakage associated with waterlogging damage. Pathway analyses based on gene ontologies showed seed storage protein metabolism as upregulated in tolerant genotypes and downregulated in the sensitive genotype. Understanding the tolerance mechanism provides a platform to breed for adaptation to waterlogging stress at germination in pea.     

Changes m Ethylene Production in Relation to l-Aminocyclopropane-l-Carboxylic Acid and Its Malonyl Conjugate in Waterlogged Wheat Plants

When wheat seedlings were subjected to waterlogging, 1-aminocyelopropane-l-carboxylic acid (ACC), an ethylene precursor, accumulated in large quantity in roots. In shoots, ACC and ethylene production also increased, but declined with the prolonged periods of waterlogging. However, ACC content in roots maintained in high level during the whole period of waterlogging. Drainage caused a drastic drop in both ACC content and ethylene production in waterlogged plants to control level. 1-(malonylamino) cyclopropane-l-carboxylic acid (MACC) level in roots subjected to waterlogging showed little changes. However, MACC content in shoots kept increasing during the 9-days period of waterlogging. At later period of waterlogging (longer than 5 days) when ACC and ethylene production bad dropped, the. level of MACC continued to increase. Draining stopped this increasing, but did not reduced its level. When exogenous ACC was introduced into the leaves via transpiration stream, the ability of leaves of waterlogged plant to convert ACC to MACC was much higher than control. The data presented showed that at the later stage of waterlogging, the conversien of a great quantity of ACC to MACC in waterlogged wheat plants is the cause of the reduction of ethylene production and ACC content. It was suggested that the formation of MACC is another way of regulation in ethylene biosynthesis. Among leaves of different ages, the enhancement of ethylene, ACC and MACC content was more pronounced in older leaves than in younger laves during the waterlogging period. The physiological significance of adaptation to waterlogging stress was discussed.     

Nutritional and chlorophyll fluorescence responses of lucerne (<Emphasis Type="Italic">Medicago sativa</Emphasis>) to waterlogging and subsequent recovery

Periodic flooding of perennial crops such as lucerne (Medicago sativa,L) is a major cause of lowered productivity and leads in extreme cases to plant death. In this study, effects of waterlogging and subsequent recovery on plant nutrient composition and PSII photochemistry were studied to gain a better understanding of the mechanisms of recovery as they relate to leaf photochemistry (chlorophyll fluorescence) and nutrient dynamics. Three lucerne cultivars and one breeding line were flooded for 20 d, drained and left to recover for another 16 d under glasshouse conditions. Leaf and root nutrient composition (P, K, Ca, Mg, B, Cu and Zn) of waterlogged lucerne was significantly lower than in freely drained controls, leaf N concentrations were also significantly lower in waterlogged lucerne. At the same time, there were significantly (5-fold) higher concentrations of Fe in waterlogged roots and Na in leaves (2-fold) of stressed plants. PS II photochemistry, which was impaired due to waterlogging, recovered almost fully after 16 d of free drainage in all genotypes. Alongside fluorescence recovery, concentrations of several nutrients also increased in recovered plants. Growth parameters, however, remained suppressed after draining. The latter was due to both the smaller capacity of CO₂ assimilation in previously waterlogged plants (caused in part by nutrient deficiency and associated inhibition of PSII) and the plants need to re-direct available nutrient and assimilate pools to repair the damage to the photosynthetic apparatus and roots. It is concluded, that for any lucerne-breeding program it is important to determine not only the degree of tolerance to waterlogging but also the potential for recovery of different genotypes, as well as look for outstanding individuals within each population.     

Morpho-anatomical and physiological responses to waterlogging stress in different barley (<Emphasis Type="Italic">Hordeum vulgare</Emphasis> L.) genotypes

Waterlogging is one of the major stresses limiting crop production worldwide. The understanding of the mechanisms of plant adaptations to waterlogging stress helps improve plant tolerance to stress. In this study, physiological responses and morpho-anatomical adaptations of seven different barley genotypes were investigated under waterlogging stress. The results showed that the waterlogging-tolerant varieties (TX9425, Yerong, TF58) showed less reduction in plant height, SPAD (soil–plant analyses development analyses) value, tillers, shoot and root biomasses than did the waterlogging-sensitive varieties (Franklin, Naso Nijo, TF57). Under waterlogging stress condition, the tolerant genotypes also showed a much larger number of adventitious roots than did the sensitive genotypes. More intercellular spaces and better integrated chloroplast membrane structures were observed in the leaves of the waterlogging-tolerant cultivars, which is likely due to increased ethylene content, decreased ABA content and less accumulation of O₂^.?. The ability to form new adventitious roots and intercellular spaces in shoots can also be used as selection criteria in breeding barley for waterlogging tolerance.     

甘蓝型油菜与蔊菜属间杂种后代的苗期耐湿性综合评价

以生产上应用的耐湿性存在差异的3个甘蓝型油菜品种为对照,采用盆栽模拟湿害胁迫的方法,对15份源自甘蓝型油菜与蔊菜属间杂交获得的遗传稳定的创新种质进行苗期耐湿性鉴定和综合评价。结果显示:(1)湿害抑制根系生长,导致植株变矮,叶片发黄,生物量降低,湿害对根系影响最为严重,其次是植株总生物量积累和地上部分的生长。(2)通过主成分分析和隶属函数法,将全展叶数、绿叶率、苗高、根长、地上部分鲜重、根鲜重、植株总鲜重、地上部分干重、根干重和植株总干重等10个性状指标值转化成单一的综合评价值(D值),客观、科学、准确地对参试的18份材料进行了综合评价,为甘蓝型油菜苗期耐湿性评价提供了方法参考。(3)15份创新种质除绿叶率外的9个测定指标的耐湿性系数均高于对照品种,耐湿性综合评价结果显示,15份创新种质的D值均高于渝黄2号,13份创新种质的D值高于综合抗耐性俱佳的中油821,3份创新种质的D值高于高耐湿品种中双9号,聚类得到的高耐湿类群的7份材料中创新种质占6份(85.71%)。可见,创新种质的耐湿性平均要优于对照品种,说明通过远缘杂交获得的创新种质对甘蓝型油菜的耐湿性有了较为明显的改良和提高。     

Arguments for the use of physiological criteria for improving the salt tolerance in crops

Efforts to develop new crop varieties with improved salt tolerance have been intensified over the past 15–20 years. Despite the existence of genetic variation for salt tolerance within species, and many methods available for expanding the source of genetic variation, there is only a limited number of varieties that have been developed with improved tolerance. These new varieties have all been based upon selection for agronomic characters such as yield or survival in saline conditions. That is, based upon characters that integrate the various physiological mechanisms responsible for tolerance. Yet over the same time period, knowledge of physiological salt responses has increased substantially.Selection and breeding to increase salt tolerance might be more successful if selection is based directly on the physiological mechanisms or characters conferring tolerance. Basic questions associated with using physiological selection criteria are discussed in the paper. These are centred around the need for genetic variation, the importance of the targeted mechanism, the ease of detection of the physiological mechanism (including the analytical requirements) and the breeding strategy. Many mechanisms, including ion exclusion, ion accumulation, compatible solute production and osmotic adjustment have been associated with genetic variation in salt tolerance. Yet their successful use in improving salt tolerance, via physiological selection criteria, is largely non-existent. Consideration is given to the role of physiological criteria in the short and long term in improving salt tolerance. In several glycophytic species, particularly legumes, physiological selection based on ion exclusion from the shoots shows promise. Recent results for white clover indicate the potential for using a broad physiological selection criterion of restricted Cl accumulation in the shoots, with scope for future refinement based upon the specific physiological characters that combined result in ion exclusion.     

The response of sorghum and sunflower to short-term waterlogging

Summary Sorghum and sunflower were waterlogged for nine days during the vegetative, floral initiation/buds-visible or anthesis stage of growth under glasshouse conditions to observe the effects on root growth and development. In addition, some plants were waterlogged at all three stages to observe any adaptations induced by waterlogging. The most marked effects occurred at the initiation/buds-visible stage where a 30% reduction in root length and a 40% reduction in root dry weight of sorghum occurred with comparable figures for sunflower being 50 and 60% respectively. Generally, sorghum roots had a higher porosity than sunflower which may contribute to its greater tolerance to waterlogging. The observed changes in root growth are discussed in relation to previously documented effects of waterlogging on growth of the two species and changes which occur in the soil environment.