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1.
A mononuclear cobalt(III)-peroxo complex bearing a macrocyclic tetradentate N4 ligand, [CoIII(TMC)(O2)]+ (TMC = 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane), was generated in the reaction of [CoII(TMC)]2+ and H2O2 in the presence of triethylamine in CH3CN. The reactivity of the cobalt(III)-peroxo complex was investigated in aldehyde deformylation with various aldehydes and compared with that of iron(III)- and manganese(III)-peroxo complexes, such as [FeIII(TMC)(O2)]+ and [MnIII(TMC)(O2)]+. In this reactivity comparison, the reactivities of metal-peroxo species were found to be in the order of [MnIII(TMC)(O2)]+ > [CoIII(TMC)(O2)]+ > [FeIII(TMC)(O2)]+. A positive Hammett ρ value of 1.8, obtained in the reactions of [CoIII(TMC)(O2)]+ and para-substituted benzaldehydes, demonstrates that the aldehyde deformylation by the cobalt(III)-peroxo species occurs via a nucleophilic reaction.  相似文献   

2.
Chromomycin (Chro) forms a 2:1 drug/metal complex through the chelation with Fe(II), Co(II), or Cu(II) ion. The effects of spermine on the interaction of Fe(II), Co(II), and Cu(II) complexes of dimeric Chro with DNA were studied. Circular dichroism (CD) measurements revealed that spermine strongly competed for the Fe(II) and Cu(II) cations in dimeric Chro-DNA complexes, and disrupted the structures of these complexes. However, the DNA-CoII(Chro)2 complex showed extreme resistance to spermine-mediated competition for the Co(II) cation. According to surface plasmon resonance (SPR) experiments, a 6 mM concentration of spermine completely abolished the DNA-binding activity of FeII(Chro)2 and CuII(Chro)2 and interfered with the associative binding of CoII(Chro)2 complexes to DNA duplexes, but only slightly affected dissociation. In DNA integrity assays, lower concentrations of spermine (1 and 2 mM) promoted DNA strand cleavage by CuII(Chro)2, whereas various concentrations of spermine protected plasmid DNA from damage caused by either CoII(Chro)2 or FeII(Chro)2. Additionally, DNA condensation was observed in the reactions of DNA, spermine, and FeII(Chro)2. Despite the fact that CuII(Chro)2 and FeII(Chro)2 demonstrated lower DNA-binding activity than CoII(Chro)2 in the absence of spermine, while CuII(Chro)2 and FeII(Chro)2 exhibited greater cytoxicity against HepG2 cells than CoII(Chro)2, possibly due to competition of spermine for Fe(II) or Cu(II) in the dimeric Chro complex in the nucleus of the cancer cells. Our results should have significant relevance to future developments in metalloantibiotics for cancer therapy.  相似文献   

3.
Two dinuclear metal complexes, [Co2(bhmp)(MeCO2)2]ClO4 · 2H2O (1) and [Ni2(bhmp)(MeCO2)2]ClO4 · 2H2O (2), were synthesized with a dinucleating ligand, 2,6-bis[bis(2-hydroxyethyl)aminomethyl]-4-methylphenol [H(bhmp)]. Both complexes were easily soluble in water as well as in DMF. Electronic spectra for both complexes were measured in both solvents and analyzed using the angular overlap model (AOM). From the electronic spectra and molar conductance, both complexes were determined to exist as [M2(bhmp)(MeCO2)2]+ (M = CoII or NiII) in DMF, dissociating perchlorate ions. On the other hand, in water, it was concluded that the acetate ions were partially dissociated and each complex existed as a mixture of some dissociated species, such as [M2(bhmp)(MeCO2)(H2O)2]2+ and [M2(bhmp)(H2O)4]3+ (M = CoII or NiII). Such dissociation was also confirmed by precipitation of the dissociated species when NaBPh4 was added into an aqueous solution of the nickel complex.  相似文献   

4.
5.
Single-stranded DNA (ssDNA)-specific exonucleases (ssExos) are expected to be involved in a variety of DNA repair pathways corresponding to their cleavage polarities; however, the relationship between the cleavage polarity and the respective DNA repair pathways is only partially understood. To understand the cellular function of ssExos in DNA repair better, genes encoding ssExos were disrupted in Thermus thermophilus HB8 that seems to have only a single set of 5′–3′ and 3′–5′ ssExos unlike other model organisms. Disruption of the tthb178 gene, which was expected to encode a 3′–5′ ssExo, resulted in significant increase in the sensitivity to H2O2 and frequency of the spontaneous mutation rate, but scarcely affected the sensitivity to ultraviolet (UV) irradiation. In contrast, disruption of the recJ gene, which encodes a 5′–3′ ssExo, showed little effect on the sensitivity to H2O2, but caused increased sensitivity to UV irradiation. In vitro characterization revealed that TTHB178 possessed 3′–5′ ssExo activity that degraded ssDNAs containing deaminated and methylated bases, but not those containing oxidized bases or abasic sites. Consequently, we concluded that TTHB178 is a novel 3′–5′ ssExo that functions in various DNA repair systems in cooperation with or independently of RecJ. We named TTHB178 as T. thermophilus exonuclease I.  相似文献   

6.
A novel heterobinuclear mixed valence complex [FeIIICuII(BPBPMP)(OAc)2]ClO4, 1, with the unsymmetrical N5O2 donor ligand 2-bis[{(2-pyridylmethyl)aminomethyl}-6-{(2-hydroxybenzyl)(2-pyridylmethyl)}aminomethyl]-4-methylphenol (H2BPBPMP) has been synthesized and characterized. A combination of data from mass spectrometry, potentiometric titrations, X-ray absorption and electron paramagnetic resonance spectroscopy, as well as kinetics measurements indicates that in ethanol/water solutions an [FeIII–()OH–CuIIOH2]+ species is generated which is the likely catalyst for 2,4-bis(dinitrophenyl)phosphate and DNA hydrolysis. Insofar as the data are consistent with the presence of an FeIII-bound hydroxide acting as a nucleophile during catalysis, 1 presents a suitable mimic for the hydrolytic enzyme purple acid phosphatase. Notably, 1 is significantly more reactive than its isostructural homologues with different metal composition (FeIIIMII, where MII is ZnII, MnII, NiII, or FeII). Of particular interest is the observation that cleavage of double-stranded plasmid DNA occurs even at very low concentrations of 1 (2.5 M), under physiological conditions (optimum pH of 7.0), with a rate enhancement of 2.7×107 over the uncatalyzed reaction. Thus, 1 is one of the most effective model complexes to date, mimicking the function of nucleases.Electronic Supplementary Material Supplementary material is available for this article at .  相似文献   

7.
We demonstrate a new, efficient and easy-to-use method for enzymatic synthesis of (stereo-)specific and segmental 13C/15N/2H isotope-labeled single-stranded DNA in amounts sufficient for NMR, based on the highly efficient self-primed PCR. To achieve this, new approaches are introduced and combined. (i) Asymmetric endonuclease double digestion of tandem-repeated PCR product. (ii) T4 DNA ligase mediated ligation of two ssDNA segments. (iii) In vitro dNTP synthesis, consisting of in vitro rNTP synthesis followed by enzymatic stereo-selective reduction of the C2′ of the rNTP, and a one-pot add-up synthesis of dTTP from dUTP. The method is demonstrated on two ssDNAs: (i) a 36-nt three-way junction, selectively 13C9/15N3/2H(1′,2″,3′,4′,5′,5″)-dC labeled and (ii) a 39-nt triple-repeat three-way junction, selectively 13C9/15N3/2H(1′,2″,3′,4′,5′,5″)-dC and 13C9/15N2/2H(1′,2″,3′,4′,5′,5″)-dT labeled in segment C20-C39. Their NMR spectra show the spectral simplification, while the stereo-selective 2H-labeling in the deoxyribose of the dC-residues, straightforwardly provided assignment of their C1′–H2′ and C2′–H2′ resonances. The labeling protocols can be extended to larger ssDNA molecules and to more than two segments.  相似文献   

8.
Two novel dATP analogs for DNA photoaffinity labeling   总被引:1,自引:0,他引:1       下载免费PDF全文
Two new photoreactive dATP analogs, N6-[4-azidobenzoyl–(2-aminoethyl)]-2′-deoxyadenosine-5′-triphosphate (AB-dATP) and N6-[4-[3-(trifluoromethyl)-diazirin-3-yl]benzoyl-(2-aminoethyl)]-2′-deoxyadenosine-5′-triphosphate (DB-dATP), were synthesized from 2′-deoxyadenosine-5′-monophosphate in a six step procedure. Synthesis starts with aminoethylation of dAMP and continues with rearrangement of N1-(2-aminoethyl)-2′-deoxyadenosine-5′-monophosphate to N6-(2-aminoethyl)-2′-deoxyadenosine-5′-monophosphate (N6-dAMP). Next, N6-dAMP is converted into the triphosphate form by first protecting the N-6 primary amino group before coupling the pyrophosphate. After pyrophosphorylation, the material is deprotected to yield N6-(2-aminoethyl)-2′-deoxyadenosine-5′-triphosphate (N6-dATP). The N-6 amino group is subsequently used to attach either a phenylazide or phenyldiazirine and the photoreactive nucleotide is then enzymatically incorporated into DNA. N6-dATP and its photoreactive analogs AB-dATP and DB-dATP were successfully incorporated into DNA using the exonuclease-free Klenow fragment of DNA polymerase I in a primer extension reaction. UV irradiation of the primer extension reaction with AB-dATP or DB-dATP showed specific photocrosslinking of DNA polymerase I to DNA.  相似文献   

9.
In aqueous acetate buffer, hydrogen peroxide and hydrazine reduce the bridging superoxide in [(en)(dien)CoIII(O2)CoIII(en)(dien)](ClO4)5 (1) to the corresponding hydroperoxo complex [(en)(dien)CoIII(μ-O2H)CoIII(en)(dien)]5+ (2). In the presence of excess [H2O2] and [N2H5+] over [1], both the reactions obeyed first-order kinetics and exhibited inverse proton dependence. Protonation of 1 at equilibrium generates [(en)(dien)CoIII(μ-O2H)CoIII(en)(dien)]6+ (1H), the conjugate acid from 1, which appears to be a kinetic dead-end and that accounts for the observed inverse proton dependence on rate. Reaction rates significantly decrease with increasing proportion of D2O replacing H2O in the solvent and an H-atom transfer (HAT) from the reducing species to the bridging superoxide in 1 seems reasonable at the rate step.  相似文献   

10.
Using a non-planar tridentate ligand 2,6-bis(pyrazol-1-ylmethyl)pyridine (L5) two new coordination complexes [(L5)CoII(H2O)3]Cl2 (1) and [(L5)NiII(H2O)2Cl]Cl·H2O (2) have been synthesized and structurally characterized. Complex 1 has N3O3 distorted octahedral environment around CoII with coordination by L5 (two pyrazole and a pyridine nitrogen in a facial mode) and three water molecules. Complex 2 has N3O2Cl distorted octahedral geometry around NiII with meridional L5 coordination, two water molecules, and a Cl ion. Analysis of the crystal packing diagram reveals the involvement of solvent (water as metal-coordinated and as solvent of crystallization) and counteranion (Cl) to play significant roles in generating 1D chains, involving O-H···Cl, and O-H···O interactions.  相似文献   

11.
Three new organic-inorganic hybrid materials with 4,4′-bipy ligands and copper cations as linkers, [CuII(H2O)(4,4′-bipy)2][CuII(H2O)(4,4′-bpy)2]2H[CuIIP8Mo12O62H12] · 5H2O (1), [CuI(4,4′-bipy)][CuII(4,4′-bipy)]2 (BW12O40) · (4,4′-bipy) · 2H2O (2) and [CuI (4,4′-bipy)]3 (PMo12O40) · (pip) · 2H2O (3) (pip = piperazine; 4,4′-bipy = 4,4′-bipyridine), have been hydrothermally synthesized. The single X-ray structural analysis reveals that the structure of 1 is constructed from [Cu(H2O)(4,4′-bipy)2] complexes into a novel, three-dimensional supermolecular network with 1-D channels in which Cu[P4Mo6]2 dimer clusters reside. To the best of our knowledge, compound 1 is the first complex in which the [P4Mo6] clusters have been used as a non-coordinating anionic template for the construction of a novel, three-dimensional supermolecular network. Compound 2 is constructed from the six-supported [BW12O40]5− polyoxoanions and [CuI(4,4′-bipy)] and [CuII(4,4′-bipy)] groups into a novel, 3-D network. Compound 3 exhibits unusual 3-D supramolecular frameworks, which are constructed from tetrasupporting [PMo12O40]3− clusters and [CuI (4,4′-bipy)n] coordination polymer chains. The electrochemical properties of 2 and 3 have been investigated in detail.  相似文献   

12.
[M(TPA)Cl]ClO4·nH2O complexes (1: M = CoII, n = 0; 2: M = CuII, n = ½; 3: M = ZnII, n = 0) where TPA = tris(2-pyridylmethyl)amine, were synthesized and structurally characterized. The molecular structure of [Cu(TPA)Cl]ClO4·½H2O was determined by single crystal X-ray crystallography. In aqueous solution, the complex ions [M(TPA)Cl]+ (M = CoII or CuII) are hydrolyzed to the corresponding aqua species [M(TPA)(H2O)]2+. In contrast to the TBP [Cu(TPA)(H2O)]2+, the corresponding TBP cobalt(II) species showed severe distortion towards tetrahedral geometry. The interactions of the three complexes with DNA have been investigated at pH 7.0 (1.0 mM Tris-Cl buffer) and 37 °C. Significant DNA cleavages were obtained for complexes 1 and 2, whereas complex 3 did not show any detectable cleavage for DNA. Under pseudo Michaelis-Menten kinetic conditions, the kinetic parameters kcat and KM were determined as kcat = 6.59 h−1 and KM = 2.20 × 10−4 M for 1 and the corresponding parameters for 2 are kcat = 5.7 × 10−2 h−1 and KM = 6.9 × 10−5 M, and the reactivity of the complexes in promoting the cleavage of DNA decreases in the order 1 > 2 ? 3. The rate enhancements for the DNA cleavage by 1 and 2 correspond to 1.8 × 108 and 1.6 × 106, respectively, over the non-catalyzed DNA. The reactivity of the two complexes was discussed in relation to other related artificial nucleases.  相似文献   

13.
Reaction of M(OAc)2 (MII = CuII for 1, CoII for 2, and PbII for 3) with pyridine-2,6-dicarboxylic acid (H2pydc) in presence of a dipyridyl spacer 2,5-bis(4-pyridyl)-1,3,4-oxadiazole (bpo) affords three novel metal-organic supramolecular networks [Cu2(bpo)(pydc)2(H2O)3] · 2.75H2O(1), [Co(bpo)(pydc)(H2O)2] · (H2O) (2) and [Pb(pydc)]n (3), which have been structurally determined by single-crystal X-ray diffraction. The dimeric Cu-pydc coordination framework bridged by a bpo spacer in 1 is hydrogen-bonded to four others to result in a two-dimensional (2-D) sheet array. The neutral monomeric molecules in 2 have an ordered 3-D stacking stabilized via hydrogen bonds and significant π-π interactions in the lattice, possessing large porous channels with the inclusion of guest solvates. In coordination polymer 3, the PbII ion takes the unusual distorted capped trigonal prismatic geometry (PbNO6) and each pydc dianion binds to four PbII centres to form a 2-D infinite network. The thermal stabilities of these complexes have also been investigated.  相似文献   

14.
Synthesis and crystal structure of two coordination polymers of composition [MnII(H2bpbn)1.5][ClO4]2 · 2MeOH · 2H2O (1) and [CoII(H2bpbn)(H2O)2]Cl2 · H2O (2) [H2bpbn = N,N′-bis(2-pyridinecarboxamido)-1,4-butane], formed from the reaction between [Mn(H2O)6][ClO4]2/CoCl2 · 4H2O with H2bpbn in MeCN, are described. In 1 each MnII ion is surrounded by three pyridine amide units, providing three pyridine nitrogen and three amide oxygen donors. Each MnII center in 1 has distorted MnN3O3 coordination. In 2 each CoII ion is coordinated by two pyridine amide moieties in the equatorial plane and two water molecules provide coordination in the axial positions. Thus, the metal center in 2 has trans-octahedral geometry. In both 1 and 2, the existence of 1D zigzag network structure has been revealed. Owing to π-π stacking of pyridine rings from adjacent layers 1 forms 2D network; 2 forms 2D and 3D network assemblies via N-H?Cl and O-H?Cl secondary interactions. Both the metal centers are high-spin.  相似文献   

15.
A study of the reaction kinetics between the trinuclear palladium(II) acetate Pd3(μ-OOCMe)6 (1) and the mononuclear 3d-metal (NiII, CoII, CuII) acetates in acetic acid under water-specified conditions revealed a fairly complicated reaction mechanism triggered by the primary hydrolytic cleavage of an acetate bridge in molecule 1. The isolated reaction products, as established by X-ray diffraction study, are 1D polymeric complexes {Pd(μ-OOCMe)4M(OH2)(HOOCMe)2}n (M = NiII, CoII, CuII, MnII, ZnII) built of the PdII-based paddlewheel units [Pd(μ-OOCMe)4M] and linked trough the H-bonded H2O and MeCOOH molecules.  相似文献   

16.
Synthesis and antisense activity of oligonucleotides modified with 2′-O-[2-[(N,N-dimethylamino)oxy] ethyl] (2′-O-DMAOE) are described. The 2′-O-DMAOE-modified oligonucleotides showed superior metabolic stability in mice. The phosphorothioate oligonucleotide ‘gapmers’, with 2′-O-DMAOE- modified nucleoside residues at the ends and 2′-deoxy nucleosides residues in the central region, showed dose-dependent inhibition of mRNA expression in cell culture for two targets. ‘Gapmer’ oligonucleotides have one or two 2′-O-modified regions and a 2′-deoxyoligonucleotide phosphorothioate region that allows RNase H digestion of target mRNA. To determine the in vivo potency and efficacy, BalbC mice were treated with 2′-O-DMAOE gapmers and a dose-dependent reduction in the targeted C-raf mRNA expression was observed. Oligonucleotides with 2′-O-DMAOE modifications throughout the sequences reduced the intercellular adhesion molecule-1 (ICAM-1) protein expression very efficiently in HUVEC cells with an IC50 of 1.8 nM. The inhibition of ICAM-1 protein expression by these uniformly modified 2′-O-DMAOE oligonucleotides may be due to selective interference with the formation of the translational initiation complex. These results demonstrate that 2′-O-DMAOE- modified oligonucleotides are useful for antisense-based therapeutics when either RNase H-dependent or RNase H-independent target reduction mechanisms are employed.  相似文献   

17.
Two 3D coordination polymers, {NiII(tp)(OHCH3)}n (1), and {CoII(tp)(phen)(H2O)}n (2) (tp = terephthalic dianion, phen = 1,10-phenanthroline), have been synthesized by self-assembly. The structure analyses show that both of the two complexes are formed by one-dimensional infinite chains through non-covalent interactions, but 1 is formed by one-dimensional straightforward chains, while 2 is based on one-dimensional zigzag ones. The photoluminescent study of the two complexes shows that they exhibit fluorescent emission bands at ca. 374 nm and 392 nm, respectively.  相似文献   

18.
Four octamolybdate-based compounds, that is, CuII2(L1)4(Mo8O26) (1), CuII2(HL2)4(Mo8O26)2 (2), [CuIIL2(H2O)(Mo8O26)0.5]·2H2O (3) and [CuIIL2(H2O)(Mo8O26)0.5]·2H2O (4) (L1 = 2-(2-pyridyl)imidazole, L2 = 2-(1-(pyridine-3-ylmethyl)-1H-imidazol-2-yl)pyridine), have been hydrothermally synthesized via changing the reaction conditions and structurally characterized by single-crystal X-ray diffraction. With L1 ligand, we obtained compound 1, which is a 0D molecule and extends to a 3D supramolecular structure via hydrogen-bonding interactions. By using L2 instead of L1 ligand, compound 2 comes into being which is as well a discrete molecule and further extended to a 3D supramolecular structure by hydrogen bonds. Intriguingly, compounds 3 and 4 are supramolecular isomers: the former is a 2D 4-connected network and the latter is a 3D (3,4)-connected framework. The measurements of diffuse reflectance for compounds 1-4 indicate that they are potential wide gap semiconductors.  相似文献   

19.
The Schiff base, non-symmetrical, compartmental ligand N-[5-(2-{[2-hydroxy-3-methoxy-phenyl-methylidene]-amino}-phenyl-sulfamoyl)-[1,3,4]thiadiazol-2-yl]-acetamide (H3L) has been prepared by condensation of the acetazolamide derivative N-[5-(2-amino-phenylsulfamoyl)-[1,3,4]thiadiazol-2-yl]-acetamide (3) with 2-hydroxy-3-methoxy-benzaldehyde. The complexation of H3L with cobalt(II) chloride in pyridine under aerobic conditions yielded [CoIII(HL)(py)2][CoII(py)Cl3] · CH3CH2OH (4). The single crystal X-ray structures of H3L and 4 are reported. In the mononuclear cation [CoIII(HL)(py)2]+ of 4 the octahedral cobalt(III) ion is bound at the inner, metal ion binding site, and the larger, empty, outer metal binding site is partly occupied by the hydrogen-bonded ethanol molecule of crystallisation.  相似文献   

20.
Divalent metal ions promote hydrolysis of RNA backbones generating 5′OH and 2′;3′P as cleavage products. In these reactions, the neighboring 2′OH act as the nucleophile. RNA catalyzed reactions also require divalent metal ions and a number of different metal ions function in RNA mediated cleavage of RNA. In one case, the LZV leadzyme, it was shown that this catalytic RNA requires lead for catalysis. So far, none of the naturally isolated ribozymes have been demonstrated to use lead to activate the nucleophile. Here we provide evidence that RNase P RNA, a naturally trans-acting ribozyme, has leadzyme properties. But, in contrast to LZV RNA, RNase P RNA mediated cleavage promoted by Pb2+ results in 5′ phosphate and 3′OH as cleavage products. Based on our findings, we infer that Pb2+ activates H2O to act as the nucleophile and we identified residues both in the substrate and RNase P RNA that most likely influenced the positioning of Pb2+ at the cleavage site. Our data suggest that Pb2+ can promote cleavage of RNA by activating either an inner sphere H2O or a neighboring 2′OH to act as nucleophile.  相似文献   

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